data_3ORL
#
_model_server_result.job_id            '_FnRjKXBaAL0ze1j9bk59w' 
_model_server_result.datetime_utc      '2024-11-14 08:33:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3orl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":340}' 
#
_entry.id    3ORL 
#
_exptl.entry_id    3ORL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ORL 
_cell.length_a            40.191 
_cell.length_b            50.633 
_cell.length_c            132.762 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ORL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O3G AGS . A AGS 340 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc2 B O2B AGS . A AGS 340 1_555 C MN MN . A MN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     3ORL 
_atom_sites.fract_transf_matrix[1][1]    0.024881 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007532 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AGS A 1 340 340 AGS AGS . 
C 3 MN A 1 341 341 MN MN . 
D 4 HOH A 1 309 1 HOH HOH . 
D 4 HOH A 2 310 2 HOH HOH . 
D 4 HOH A 3 311 3 HOH HOH . 
D 4 HOH A 4 312 4 HOH HOH . 
D 4 HOH A 5 313 5 HOH HOH . 
D 4 HOH A 6 314 6 HOH HOH . 
D 4 HOH A 7 315 7 HOH HOH . 
D 4 HOH A 8 316 8 HOH HOH . 
D 4 HOH A 9 317 9 HOH HOH . 
D 4 HOH A 10 318 10 HOH HOH . 
D 4 HOH A 11 319 11 HOH HOH . 
D 4 HOH A 12 320 12 HOH HOH . 
D 4 HOH A 13 321 13 HOH HOH . 
D 4 HOH A 14 322 14 HOH HOH . 
D 4 HOH A 15 323 15 HOH HOH . 
D 4 HOH A 16 324 16 HOH HOH . 
D 4 HOH A 17 325 17 HOH HOH . 
D 4 HOH A 18 326 18 HOH HOH . 
D 4 HOH A 19 327 19 HOH HOH . 
D 4 HOH A 20 328 20 HOH HOH . 
D 4 HOH A 21 329 21 HOH HOH . 
D 4 HOH A 22 330 22 HOH HOH . 
D 4 HOH A 23 331 23 HOH HOH . 
D 4 HOH A 24 332 24 HOH HOH . 
D 4 HOH A 25 333 25 HOH HOH . 
D 4 HOH A 26 334 26 HOH HOH . 
D 4 HOH A 27 335 27 HOH HOH . 
D 4 HOH A 28 336 28 HOH HOH . 
D 4 HOH A 29 337 29 HOH HOH . 
D 4 HOH A 30 338 30 HOH HOH . 
D 4 HOH A 31 339 31 HOH HOH . 
D 4 HOH A 32 342 32 HOH HOH . 
D 4 HOH A 33 343 33 HOH HOH . 
D 4 HOH A 34 344 34 HOH HOH . 
D 4 HOH A 35 345 35 HOH HOH . 
D 4 HOH A 36 346 36 HOH HOH . 
D 4 HOH A 37 347 37 HOH HOH . 
D 4 HOH A 38 348 38 HOH HOH . 
D 4 HOH A 39 349 39 HOH HOH . 
D 4 HOH A 40 350 40 HOH HOH . 
D 4 HOH A 41 351 41 HOH HOH . 
D 4 HOH A 42 352 42 HOH HOH . 
D 4 HOH A 43 353 43 HOH HOH . 
D 4 HOH A 44 354 44 HOH HOH . 
D 4 HOH A 45 355 45 HOH HOH . 
D 4 HOH A 46 356 46 HOH HOH . 
D 4 HOH A 47 357 47 HOH HOH . 
D 4 HOH A 48 358 48 HOH HOH . 
D 4 HOH A 49 359 49 HOH HOH . 
D 4 HOH A 50 360 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . B 2 25.049 33.13 8.841 1 60.68 ? PG AGS 340 A 1 
HETATM 2 S S1G AGS . . . B 2 23.782 32.427 7.889 1 64.2 ? S1G AGS 340 A 1 
HETATM 3 O O2G AGS . . . B 2 26.416 32.285 8.838 1 61.32 ? O2G AGS 340 A 1 
HETATM 4 O O3G AGS . . . B 2 24.548 33.235 10.337 1 57.78 ? O3G AGS 340 A 1 
HETATM 5 P PB AGS . . . B 2 24.088 35.721 8.247 1 53.67 ? PB AGS 340 A 1 
HETATM 6 O O1B AGS . . . B 2 23.553 35.842 6.867 1 52.45 ? O1B AGS 340 A 1 
HETATM 7 O O2B AGS . . . B 2 22.959 35.364 9.232 1 53.83 ? O2B AGS 340 A 1 
HETATM 8 O O3B AGS . . . B 2 25.275 34.628 8.252 1 56.71 ? O3B AGS 340 A 1 
HETATM 9 P PA AGS . . . B 2 25.601 37.238 10.121 1 42.66 ? PA AGS 340 A 1 
HETATM 10 O O1A AGS . . . B 2 24.645 37.021 11.248 1 43.69 ? O1A AGS 340 A 1 
HETATM 11 O O2A AGS . . . B 2 26.854 36.309 10.224 1 45.93 ? O2A AGS 340 A 1 
HETATM 12 O O3A AGS . . . B 2 24.82 37.09 8.709 1 48.66 ? O3A AGS 340 A 1 
HETATM 13 O O5' AGS . . . B 2 26.118 38.759 10.096 1 36.1 ? O5' AGS 340 A 1 
HETATM 14 C C5' AGS . . . B 2 27.079 39.103 9.127 1 31.02 ? C5' AGS 340 A 1 
HETATM 15 C C4' AGS . . . B 2 27.868 40.319 9.58 1 29.79 ? C4' AGS 340 A 1 
HETATM 16 O O4' AGS . . . B 2 26.967 41.354 9.906 1 30.1 ? O4' AGS 340 A 1 
HETATM 17 C C3' AGS . . . B 2 28.702 40.061 10.82 1 30.12 ? C3' AGS 340 A 1 
HETATM 18 O O3' AGS . . . B 2 30.018 39.672 10.492 1 29.1 ? O3' AGS 340 A 1 
HETATM 19 C C2' AGS . . . B 2 28.639 41.384 11.567 1 30.77 ? C2' AGS 340 A 1 
HETATM 20 O O2' AGS . . . B 2 29.697 42.236 11.179 1 29.37 ? O2' AGS 340 A 1 
HETATM 21 C C1' AGS . . . B 2 27.339 42.017 11.1 1 30.26 ? C1' AGS 340 A 1 
HETATM 22 N N9 AGS . . . B 2 26.281 41.848 12.118 1 27.43 ? N9 AGS 340 A 1 
HETATM 23 C C8 AGS . . . B 2 25.474 40.75 12.291 1 27.85 ? C8 AGS 340 A 1 
HETATM 24 N N7 AGS . . . B 2 24.629 40.981 13.319 1 29.03 ? N7 AGS 340 A 1 
HETATM 25 C C5 AGS . . . B 2 24.882 42.213 13.806 1 26.18 ? C5 AGS 340 A 1 
HETATM 26 C C6 AGS . . . B 2 24.315 42.938 14.848 1 26.06 ? C6 AGS 340 A 1 
HETATM 27 N N6 AGS . . . B 2 23.295 42.429 15.548 1 28.35 ? N6 AGS 340 A 1 
HETATM 28 N N1 AGS . . . B 2 24.787 44.209 15.127 1 29.55 ? N1 AGS 340 A 1 
HETATM 29 C C2 AGS . . . B 2 25.814 44.751 14.374 1 29.19 ? C2 AGS 340 A 1 
HETATM 30 N N3 AGS . . . B 2 26.376 44.022 13.34 1 28.57 ? N3 AGS 340 A 1 
HETATM 31 C C4 AGS . . . B 2 25.916 42.772 13.06 1 25.89 ? C4 AGS 340 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#