data_3ORN
#
_model_server_result.job_id            3Ox1CDrUfa6GxRgKkLKIBQ 
_model_server_result.datetime_utc      '2024-11-13 19:21:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3orn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3ORN 
#
_exptl.entry_id    3ORN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ORN 
_cell.length_a            136.67 
_cell.length_b            136.67 
_cell.length_c            60.906 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ORN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 40.604 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O2A ANP . A ANP 1 1_555 C MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc2 B O2B ANP . A ANP 1 1_555 C MG MG . A MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc3 C MG MG . A MG 2 1_555 A OD1 ASN 135 A ASN 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc4 C MG MG . A MG 2 1_555 A OD2 ASP 148 A ASP 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 66 n n 
PG O2G ANP sing 67 n n 
PG O3G ANP sing 68 n n 
PG N3B ANP sing 69 n n 
O2G HOG2 ANP sing 70 n n 
O3G HOG3 ANP sing 71 n n 
PB O1B ANP doub 72 n n 
PB O2B ANP sing 73 n n 
PB N3B ANP sing 74 n n 
PB O3A ANP sing 75 n n 
O2B HOB2 ANP sing 76 n n 
N3B HNB1 ANP sing 77 n n 
PA O1A ANP doub 78 n n 
PA O2A ANP sing 79 n n 
PA O3A ANP sing 80 n n 
PA O5' ANP sing 81 n n 
O2A HOA2 ANP sing 82 n n 
O5' C5' ANP sing 83 n n 
C5' C4' ANP sing 84 n n 
C5' "H5'1" ANP sing 85 n n 
C5' "H5'2" ANP sing 86 n n 
C4' O4' ANP sing 87 n n 
C4' C3' ANP sing 88 n n 
C4' H4' ANP sing 89 n n 
O4' C1' ANP sing 90 n n 
C3' O3' ANP sing 91 n n 
C3' C2' ANP sing 92 n n 
C3' H3' ANP sing 93 n n 
O3' HO3' ANP sing 94 n n 
C2' O2' ANP sing 95 n n 
C2' C1' ANP sing 96 n n 
C2' H2' ANP sing 97 n n 
O2' HO2' ANP sing 98 n n 
C1' N9 ANP sing 99 n n 
C1' H1' ANP sing 100 n n 
N9 C8 ANP sing 101 n y 
N9 C4 ANP sing 102 n y 
C8 N7 ANP doub 103 n y 
C8 H8 ANP sing 104 n n 
N7 C5 ANP sing 105 n y 
C5 C6 ANP sing 106 n y 
C5 C4 ANP doub 107 n y 
C6 N6 ANP sing 108 n n 
C6 N1 ANP doub 109 n y 
N6 HN61 ANP sing 110 n n 
N6 HN62 ANP sing 111 n n 
N1 C2 ANP sing 112 n y 
C2 N3 ANP doub 113 n y 
C2 H2 ANP sing 114 n n 
N3 C4 ANP sing 115 n y 
#
_atom_sites.entry_id                     3ORN 
_atom_sites.fract_transf_matrix[1][1]    0.007317 
_atom_sites.fract_transf_matrix[1][2]    0.004224 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008449 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 1 1 ANP ANP . 
C 3 MG A 1 2 2 MG MG . 
D 4 3OR A 1 400 400 3OR 3OR . 
E 5 PGE A 1 401 401 PGE PGE . 
F 6 SO4 A 1 402 402 SO4 SO4 . 
G 6 SO4 A 1 403 403 SO4 SO4 . 
H 6 SO4 A 1 404 404 SO4 SO4 . 
I 6 SO4 A 1 405 405 SO4 SO4 . 
J 6 SO4 A 1 406 406 SO4 SO4 . 
K 6 SO4 A 1 407 407 SO4 SO4 . 
L 7 HOH A 1 408 408 HOH HOH . 
L 7 HOH A 2 409 409 HOH HOH . 
L 7 HOH A 3 410 410 HOH HOH . 
L 7 HOH A 4 411 411 HOH HOH . 
L 7 HOH A 5 412 412 HOH HOH . 
L 7 HOH A 6 413 413 HOH HOH . 
L 7 HOH A 7 414 414 HOH HOH . 
L 7 HOH A 8 415 415 HOH HOH . 
L 7 HOH A 9 416 416 HOH HOH . 
L 7 HOH A 10 417 417 HOH HOH . 
L 7 HOH A 11 418 418 HOH HOH . 
L 7 HOH A 12 419 419 HOH HOH . 
L 7 HOH A 13 420 420 HOH HOH . 
L 7 HOH A 14 421 421 HOH HOH . 
L 7 HOH A 15 422 422 HOH HOH . 
L 7 HOH A 16 423 423 HOH HOH . 
L 7 HOH A 17 424 424 HOH HOH . 
L 7 HOH A 18 425 425 HOH HOH . 
L 7 HOH A 19 426 426 HOH HOH . 
L 7 HOH A 20 427 427 HOH HOH . 
L 7 HOH A 21 428 428 HOH HOH . 
L 7 HOH A 22 429 429 HOH HOH . 
L 7 HOH A 23 430 430 HOH HOH . 
L 7 HOH A 24 431 431 HOH HOH . 
L 7 HOH A 25 432 432 HOH HOH . 
L 7 HOH A 26 433 433 HOH HOH . 
L 7 HOH A 27 434 434 HOH HOH . 
L 7 HOH A 28 435 435 HOH HOH . 
L 7 HOH A 29 436 436 HOH HOH . 
L 7 HOH A 30 437 437 HOH HOH . 
L 7 HOH A 31 438 438 HOH HOH . 
L 7 HOH A 32 439 439 HOH HOH . 
L 7 HOH A 33 440 440 HOH HOH . 
L 7 HOH A 34 441 441 HOH HOH . 
L 7 HOH A 35 442 442 HOH HOH . 
L 7 HOH A 36 443 443 HOH HOH . 
L 7 HOH A 37 444 444 HOH HOH . 
L 7 HOH A 38 445 445 HOH HOH . 
L 7 HOH A 39 446 446 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . B 2 55.068 -11.974 10.232 1 70.91 ? PG ANP 1 A 1 
HETATM 2 O O1G ANP . . . B 2 54.095 -11.16 10.998 1 68.67 ? O1G ANP 1 A 1 
HETATM 3 O O2G ANP . . . B 2 55.427 -11.173 8.872 1 69.65 ? O2G ANP 1 A 1 
HETATM 4 O O3G ANP . . . B 2 56.412 -12.184 11.117 1 71.91 ? O3G ANP 1 A 1 
HETATM 5 P PB ANP . . . B 2 55.508 -14.694 9.321 1 57.2 ? PB ANP 1 A 1 
HETATM 6 O O1B ANP . . . B 2 54.829 -15.966 9.004 1 55.79 ? O1B ANP 1 A 1 
HETATM 7 O O2B ANP . . . B 2 56.612 -14.974 10.465 1 57.92 ? O2B ANP 1 A 1 
HETATM 8 N N3B ANP . . . B 2 54.355 -13.528 9.877 1 65.29 ? N3B ANP 1 A 1 
HETATM 9 P PA ANP . . . B 2 57.734 -14.51 7.708 1 51.27 ? PA ANP 1 A 1 
HETATM 10 O O1A ANP . . . B 2 58.333 -13.557 6.77 1 51.7 ? O1A ANP 1 A 1 
HETATM 11 O O2A ANP . . . B 2 58.563 -14.419 9.089 1 53.05 ? O2A ANP 1 A 1 
HETATM 12 O O3A ANP . . . B 2 56.168 -14.12 7.927 1 57.08 ? O3A ANP 1 A 1 
HETATM 13 O O5' ANP . . . B 2 57.854 -15.988 7.089 1 50.34 ? O5' ANP 1 A 1 
HETATM 14 C C5' ANP . . . B 2 56.995 -16.066 5.955 1 50.46 ? C5' ANP 1 A 1 
HETATM 15 C C4' ANP . . . B 2 56.947 -17.508 5.429 1 52.67 ? C4' ANP 1 A 1 
HETATM 16 O O4' ANP . . . B 2 58.289 -18.016 5.163 1 52.72 ? O4' ANP 1 A 1 
HETATM 17 C C3' ANP . . . B 2 56.289 -18.478 6.441 1 54.3 ? C3' ANP 1 A 1 
HETATM 18 O O3' ANP . . . B 2 55.328 -19.303 5.768 1 58.24 ? O3' ANP 1 A 1 
HETATM 19 C C2' ANP . . . B 2 57.45 -19.297 6.99 1 52.82 ? C2' ANP 1 A 1 
HETATM 20 O O2' ANP . . . B 2 57.014 -20.597 7.352 1 54.42 ? O2' ANP 1 A 1 
HETATM 21 C C1' ANP . . . B 2 58.445 -19.31 5.834 1 50.88 ? C1' ANP 1 A 1 
HETATM 22 N N9 ANP . . . B 2 59.827 -19.451 6.319 1 47.5 ? N9 ANP 1 A 1 
HETATM 23 C C8 ANP . . . B 2 60.542 -18.528 7.029 1 44.81 ? C8 ANP 1 A 1 
HETATM 24 N N7 ANP . . . B 2 61.73 -18.979 7.284 1 43.9 ? N7 ANP 1 A 1 
HETATM 25 C C5 ANP . . . B 2 61.864 -20.208 6.762 1 42.83 ? C5 ANP 1 A 1 
HETATM 26 C C6 ANP . . . B 2 62.905 -21.163 6.717 1 41.9 ? C6 ANP 1 A 1 
HETATM 27 N N6 ANP . . . B 2 64.116 -20.892 7.307 1 39.39 ? N6 ANP 1 A 1 
HETATM 28 N N1 ANP . . . B 2 62.687 -22.337 6.087 1 42.36 ? N1 ANP 1 A 1 
HETATM 29 C C2 ANP . . . B 2 61.512 -22.615 5.503 1 41.52 ? C2 ANP 1 A 1 
HETATM 30 N N3 ANP . . . B 2 60.504 -21.74 5.52 1 43.44 ? N3 ANP 1 A 1 
HETATM 31 C C4 ANP . . . B 2 60.639 -20.537 6.131 1 45.36 ? C4 ANP 1 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#