data_3ORY # _model_server_result.job_id 25EKgG1w5woRmhSTGkGHVA _model_server_result.datetime_utc '2025-08-31 11:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ory # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":356}' # _entry.id 3ORY # _exptl.entry_id 3ORY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ORY _cell.length_a 103.76 _cell.length_b 103.76 _cell.length_c 84.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ORY _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 103.76 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.88 89.858796 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 3ORY _atom_sites.fract_transf_matrix[1][1] 0.009638 _atom_sites.fract_transf_matrix[1][2] 0.005564 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 354 1 PO4 PO4 . C 2 PO4 A 1 355 2 PO4 PO4 . D 2 PO4 A 1 356 3 PO4 PO4 . E 3 HOH A 1 357 1 HOH HOH . E 3 HOH A 2 358 2 HOH HOH . E 3 HOH A 3 359 3 HOH HOH . E 3 HOH A 4 360 4 HOH HOH . E 3 HOH A 5 361 5 HOH HOH . E 3 HOH A 6 362 6 HOH HOH . E 3 HOH A 7 363 7 HOH HOH . E 3 HOH A 8 364 8 HOH HOH . E 3 HOH A 9 365 9 HOH HOH . E 3 HOH A 10 366 10 HOH HOH . E 3 HOH A 11 367 11 HOH HOH . E 3 HOH A 12 368 12 HOH HOH . E 3 HOH A 13 369 13 HOH HOH . E 3 HOH A 14 370 14 HOH HOH . E 3 HOH A 15 371 15 HOH HOH . E 3 HOH A 16 372 16 HOH HOH . E 3 HOH A 17 373 17 HOH HOH . E 3 HOH A 18 374 18 HOH HOH . E 3 HOH A 19 375 19 HOH HOH . E 3 HOH A 20 376 20 HOH HOH . E 3 HOH A 21 377 21 HOH HOH . E 3 HOH A 22 378 22 HOH HOH . E 3 HOH A 23 379 23 HOH HOH . E 3 HOH A 24 380 24 HOH HOH . E 3 HOH A 25 381 25 HOH HOH . E 3 HOH A 26 382 26 HOH HOH . E 3 HOH A 27 383 27 HOH HOH . E 3 HOH A 28 384 28 HOH HOH . E 3 HOH A 29 385 29 HOH HOH . E 3 HOH A 30 386 30 HOH HOH . E 3 HOH A 31 387 31 HOH HOH . E 3 HOH A 32 388 32 HOH HOH . E 3 HOH A 33 389 33 HOH HOH . E 3 HOH A 34 390 34 HOH HOH . E 3 HOH A 35 391 35 HOH HOH . E 3 HOH A 36 392 36 HOH HOH . E 3 HOH A 37 393 37 HOH HOH . E 3 HOH A 38 394 38 HOH HOH . E 3 HOH A 39 395 39 HOH HOH . E 3 HOH A 40 396 40 HOH HOH . E 3 HOH A 41 397 41 HOH HOH . E 3 HOH A 42 398 42 HOH HOH . E 3 HOH A 43 399 43 HOH HOH . E 3 HOH A 44 400 44 HOH HOH . E 3 HOH A 45 401 45 HOH HOH . E 3 HOH A 46 402 46 HOH HOH . E 3 HOH A 47 403 47 HOH HOH . E 3 HOH A 48 404 48 HOH HOH . E 3 HOH A 49 405 49 HOH HOH . E 3 HOH A 50 406 50 HOH HOH . E 3 HOH A 51 407 51 HOH HOH . E 3 HOH A 52 408 52 HOH HOH . E 3 HOH A 53 409 53 HOH HOH . E 3 HOH A 54 410 54 HOH HOH . E 3 HOH A 55 411 55 HOH HOH . E 3 HOH A 56 412 56 HOH HOH . E 3 HOH A 57 413 57 HOH HOH . E 3 HOH A 58 414 58 HOH HOH . E 3 HOH A 59 415 59 HOH HOH . E 3 HOH A 60 416 60 HOH HOH . E 3 HOH A 61 417 61 HOH HOH . E 3 HOH A 62 418 62 HOH HOH . E 3 HOH A 63 419 63 HOH HOH . E 3 HOH A 64 420 64 HOH HOH . E 3 HOH A 65 421 65 HOH HOH . E 3 HOH A 66 422 66 HOH HOH . E 3 HOH A 67 423 67 HOH HOH . E 3 HOH A 68 424 68 HOH HOH . E 3 HOH A 69 425 69 HOH HOH . E 3 HOH A 70 426 70 HOH HOH . E 3 HOH A 71 427 71 HOH HOH . E 3 HOH A 72 428 72 HOH HOH . E 3 HOH A 73 429 73 HOH HOH . E 3 HOH A 74 430 74 HOH HOH . E 3 HOH A 75 431 75 HOH HOH . E 3 HOH A 76 432 76 HOH HOH . E 3 HOH A 77 433 77 HOH HOH . E 3 HOH A 78 434 78 HOH HOH . E 3 HOH A 79 435 79 HOH HOH . E 3 HOH A 80 436 80 HOH HOH . E 3 HOH A 81 437 81 HOH HOH . E 3 HOH A 82 438 82 HOH HOH . E 3 HOH A 83 439 83 HOH HOH . E 3 HOH A 84 440 84 HOH HOH . E 3 HOH A 85 441 85 HOH HOH . E 3 HOH A 86 442 86 HOH HOH . E 3 HOH A 87 443 87 HOH HOH . E 3 HOH A 88 444 88 HOH HOH . E 3 HOH A 89 445 89 HOH HOH . E 3 HOH A 90 446 90 HOH HOH . E 3 HOH A 91 447 91 HOH HOH . E 3 HOH A 92 448 92 HOH HOH . E 3 HOH A 93 449 93 HOH HOH . E 3 HOH A 94 450 94 HOH HOH . E 3 HOH A 95 451 95 HOH HOH . E 3 HOH A 96 452 96 HOH HOH . E 3 HOH A 97 453 97 HOH HOH . E 3 HOH A 98 454 98 HOH HOH . E 3 HOH A 99 455 99 HOH HOH . E 3 HOH A 100 456 100 HOH HOH . E 3 HOH A 101 457 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 10.172 58.076 3.235 1 28.12 ? P PO4 356 A 1 HETATM 2 O O1 PO4 . . . D 2 11.649 58.039 2.91 1 28.89 ? O1 PO4 356 A 1 HETATM 3 O O2 PO4 . . . D 2 9.386 57.709 2.008 1 28.46 ? O2 PO4 356 A 1 HETATM 4 O O3 PO4 . . . D 2 9.855 57.094 4.321 1 27.21 ? O3 PO4 356 A 1 HETATM 5 O O4 PO4 . . . D 2 9.862 59.48 3.69 1 27.56 ? O4 PO4 356 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #