data_3OS3 # _model_server_result.job_id 91zk2qOgKLZY9Ju5Ow2DEQ _model_server_result.datetime_utc '2024-11-26 22:16:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3os3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OS3 # _exptl.entry_id 3OS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OS3 _cell.length_a 72.998 _cell.length_b 72.998 _cell.length_c 131.505 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2A ATP . A ATP 1 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 B O2B ATP . A ATP 1 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A OD1 ASN 135 A ASN 195 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc4 A OD2 ASP 148 A ASP 208 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 120 n n PG O2G ATP sing 121 n n PG O3G ATP sing 122 n n PG O3B ATP sing 123 n n O2G HOG2 ATP sing 124 n n O3G HOG3 ATP sing 125 n n PB O1B ATP doub 126 n n PB O2B ATP sing 127 n n PB O3B ATP sing 128 n n PB O3A ATP sing 129 n n O2B HOB2 ATP sing 130 n n PA O1A ATP doub 131 n n PA O2A ATP sing 132 n n PA O3A ATP sing 133 n n PA O5' ATP sing 134 n n O2A HOA2 ATP sing 135 n n O5' C5' ATP sing 136 n n C5' C4' ATP sing 137 n n C5' "H5'1" ATP sing 138 n n C5' "H5'2" ATP sing 139 n n C4' O4' ATP sing 140 n n C4' C3' ATP sing 141 n n C4' H4' ATP sing 142 n n O4' C1' ATP sing 143 n n C3' O3' ATP sing 144 n n C3' C2' ATP sing 145 n n C3' H3' ATP sing 146 n n O3' HO3' ATP sing 147 n n C2' O2' ATP sing 148 n n C2' C1' ATP sing 149 n n C2' H2' ATP sing 150 n n O2' HO2' ATP sing 151 n n C1' N9 ATP sing 152 n n C1' H1' ATP sing 153 n n N9 C8 ATP sing 154 n y N9 C4 ATP sing 155 n y C8 N7 ATP doub 156 n y C8 H8 ATP sing 157 n n N7 C5 ATP sing 158 n y C5 C6 ATP sing 159 n y C5 C4 ATP doub 160 n y C6 N6 ATP sing 161 n n C6 N1 ATP doub 162 n y N6 HN61 ATP sing 163 n n N6 HN62 ATP sing 164 n n N1 C2 ATP sing 165 n y C2 N3 ATP doub 166 n y C2 H2 ATP sing 167 n n N3 C4 ATP sing 168 n y # _atom_sites.entry_id 3OS3 _atom_sites.fract_transf_matrix[1][1] 0.013699 _atom_sites.fract_transf_matrix[1][2] 0.007909 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1 1 ATP ATP . C 3 3OS A 1 400 400 3OS 3OS . D 4 MG A 1 401 401 MG MG . E 5 HOH A 1 402 402 HOH HOH . E 5 HOH A 2 403 403 HOH HOH . E 5 HOH A 3 404 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 16.37 45.878 -2.005 1 70.6 ? PG ATP 1 A 1 HETATM 2 O O1G ATP . . . B 2 17.226 45.817 -0.776 1 67.63 ? O1G ATP 1 A 1 HETATM 3 O O2G ATP . . . B 2 16.902 44.946 -3.13 1 70.71 ? O2G ATP 1 A 1 HETATM 4 O O3G ATP . . . B 2 14.923 45.51 -1.61 1 70.97 ? O3G ATP 1 A 1 HETATM 5 P PB ATP . . . B 2 15.182 48.016 -3.399 1 66.33 ? PB ATP 1 A 1 HETATM 6 O O1B ATP . . . B 2 15.534 49.447 -3.482 1 70.52 ? O1B ATP 1 A 1 HETATM 7 O O2B ATP . . . B 2 13.757 47.761 -2.964 1 64.63 ? O2B ATP 1 A 1 HETATM 8 O O3B ATP . . . B 2 16.275 47.399 -2.477 1 68.72 ? O3B ATP 1 A 1 HETATM 9 P PA ATP . . . B 2 14.493 46.809 -5.917 1 67.71 ? PA ATP 1 A 1 HETATM 10 O O1A ATP . . . B 2 15.3 45.847 -6.704 1 66.53 ? O1A ATP 1 A 1 HETATM 11 O O2A ATP . . . B 2 13.296 46.176 -5.221 1 68.18 ? O2A ATP 1 A 1 HETATM 12 O O3A ATP . . . B 2 15.472 47.487 -4.864 1 67.87 ? O3A ATP 1 A 1 HETATM 13 O O5' ATP . . . B 2 14.056 48.052 -6.827 1 68.35 ? O5' ATP 1 A 1 HETATM 14 C C5' ATP . . . B 2 15.001 48.673 -7.675 1 67.18 ? C5' ATP 1 A 1 HETATM 15 C C4' ATP . . . B 2 14.556 50.079 -8.07 1 67.74 ? C4' ATP 1 A 1 HETATM 16 O O4' ATP . . . B 2 13.441 50.07 -8.948 1 66.86 ? O4' ATP 1 A 1 HETATM 17 C C3' ATP . . . B 2 14.193 50.961 -6.882 1 67.87 ? C3' ATP 1 A 1 HETATM 18 O O3' ATP . . . B 2 14.904 52.196 -7.038 1 70.79 ? O3' ATP 1 A 1 HETATM 19 C C2' ATP . . . B 2 12.668 51.09 -6.968 1 67.02 ? C2' ATP 1 A 1 HETATM 20 O O2' ATP . . . B 2 12.07 52.239 -6.466 1 64.37 ? O2' ATP 1 A 1 HETATM 21 C C1' ATP . . . B 2 12.409 50.927 -8.442 1 67.31 ? C1' ATP 1 A 1 HETATM 22 N N9 ATP . . . B 2 11.146 50.268 -8.911 1 69.26 ? N9 ATP 1 A 1 HETATM 23 C C8 ATP . . . B 2 10.721 49.02 -8.52 1 69.97 ? C8 ATP 1 A 1 HETATM 24 N N7 ATP . . . B 2 9.566 48.792 -9.127 1 70.23 ? N7 ATP 1 A 1 HETATM 25 C C5 ATP . . . B 2 9.187 49.837 -9.921 1 70.08 ? C5 ATP 1 A 1 HETATM 26 C C6 ATP . . . B 2 8.099 50.183 -10.771 1 69.7 ? C6 ATP 1 A 1 HETATM 27 N N6 ATP . . . B 2 7.034 49.444 -11.028 1 68.03 ? N6 ATP 1 A 1 HETATM 28 N N1 ATP . . . B 2 8.101 51.417 -11.425 1 69.41 ? N1 ATP 1 A 1 HETATM 29 C C2 ATP . . . B 2 9.118 52.316 -11.263 1 68.15 ? C2 ATP 1 A 1 HETATM 30 N N3 ATP . . . B 2 10.182 52.011 -10.443 1 69.25 ? N3 ATP 1 A 1 HETATM 31 C C4 ATP . . . B 2 10.209 50.796 -9.774 1 70.33 ? C4 ATP 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #