data_3OS5
#
_model_server_result.job_id            fQ0uzyri8e0vlPTwinUDQA 
_model_server_result.datetime_utc      '2024-12-22 05:57:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3os5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1501}' 
#
_entry.id    3OS5 
#
_exptl.entry_id    3OS5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OS5 
_cell.length_a            101.359 
_cell.length_b            38.535 
_cell.length_c            66.541 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OS5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C SER 5 B SER 141 1_555 B N MLZ 6 B MLZ 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C MLZ 6 B MLZ 142 1_555 B N SER 7 B SER 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 321 n n 
N HN1 SAH sing 322 n n 
N HN2 SAH sing 323 n n 
CA CB SAH sing 324 n n 
CA C SAH sing 325 n n 
CA HA SAH sing 326 n n 
CB CG SAH sing 327 n n 
CB HB1 SAH sing 328 n n 
CB HB2 SAH sing 329 n n 
CG SD SAH sing 330 n n 
CG HG1 SAH sing 331 n n 
CG HG2 SAH sing 332 n n 
SD C5' SAH sing 333 n n 
C O SAH doub 334 n n 
C OXT SAH sing 335 n n 
OXT HXT SAH sing 336 n n 
C5' C4' SAH sing 337 n n 
C5' "H5'1" SAH sing 338 n n 
C5' "H5'2" SAH sing 339 n n 
C4' O4' SAH sing 340 n n 
C4' C3' SAH sing 341 n n 
C4' H4' SAH sing 342 n n 
O4' C1' SAH sing 343 n n 
C3' O3' SAH sing 344 n n 
C3' C2' SAH sing 345 n n 
C3' H3' SAH sing 346 n n 
O3' HO3' SAH sing 347 n n 
C2' O2' SAH sing 348 n n 
C2' C1' SAH sing 349 n n 
C2' H2' SAH sing 350 n n 
O2' HO2' SAH sing 351 n n 
C1' N9 SAH sing 352 n n 
C1' H1' SAH sing 353 n n 
N9 C8 SAH sing 354 n y 
N9 C4 SAH sing 355 n y 
C8 N7 SAH doub 356 n y 
C8 H8 SAH sing 357 n n 
N7 C5 SAH sing 358 n y 
C5 C6 SAH sing 359 n y 
C5 C4 SAH doub 360 n y 
C6 N6 SAH sing 361 n n 
C6 N1 SAH doub 362 n y 
N6 HN61 SAH sing 363 n n 
N6 HN62 SAH sing 364 n n 
N1 C2 SAH sing 365 n y 
C2 N3 SAH doub 366 n y 
C2 H2 SAH sing 367 n n 
N3 C4 SAH sing 368 n y 
#
_atom_sites.entry_id                     3OS5 
_atom_sites.fract_transf_matrix[1][1]    0.009866 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BME A 1 500 500 BME BME . 
D 4 EDO A 1 391 391 EDO EDO . 
E 4 EDO A 1 392 392 EDO EDO . 
F 4 EDO A 1 393 393 EDO EDO . 
G 4 EDO A 1 394 394 EDO EDO . 
H 4 EDO A 1 395 395 EDO EDO . 
I 5 UNL A 1 400 400 UNL UNL . 
J 6 SAH A 1 1501 1501 SAH SAH . 
K 7 HOH A 1 1 1 HOH HOH . 
K 7 HOH A 2 2 2 HOH HOH . 
K 7 HOH A 3 3 3 HOH HOH . 
K 7 HOH A 4 4 4 HOH HOH . 
K 7 HOH A 5 5 5 HOH HOH . 
K 7 HOH A 6 6 6 HOH HOH . 
K 7 HOH A 7 7 7 HOH HOH . 
K 7 HOH A 8 8 8 HOH HOH . 
K 7 HOH A 9 9 9 HOH HOH . 
K 7 HOH A 10 10 10 HOH HOH . 
K 7 HOH A 11 11 11 HOH HOH . 
K 7 HOH A 12 12 12 HOH HOH . 
K 7 HOH A 13 13 13 HOH HOH . 
K 7 HOH A 14 14 14 HOH HOH . 
K 7 HOH A 15 15 15 HOH HOH . 
K 7 HOH A 16 16 16 HOH HOH . 
K 7 HOH A 17 17 17 HOH HOH . 
K 7 HOH A 18 18 18 HOH HOH . 
K 7 HOH A 19 19 19 HOH HOH . 
K 7 HOH A 20 20 20 HOH HOH . 
K 7 HOH A 21 22 22 HOH HOH . 
K 7 HOH A 22 23 23 HOH HOH . 
K 7 HOH A 23 24 24 HOH HOH . 
K 7 HOH A 24 25 25 HOH HOH . 
K 7 HOH A 25 26 26 HOH HOH . 
K 7 HOH A 26 28 28 HOH HOH . 
K 7 HOH A 27 29 29 HOH HOH . 
K 7 HOH A 28 30 30 HOH HOH . 
K 7 HOH A 29 31 31 HOH HOH . 
K 7 HOH A 30 32 32 HOH HOH . 
K 7 HOH A 31 34 34 HOH HOH . 
K 7 HOH A 32 35 35 HOH HOH . 
K 7 HOH A 33 36 36 HOH HOH . 
K 7 HOH A 34 37 37 HOH HOH . 
K 7 HOH A 35 38 38 HOH HOH . 
K 7 HOH A 36 39 39 HOH HOH . 
K 7 HOH A 37 40 40 HOH HOH . 
K 7 HOH A 38 41 41 HOH HOH . 
K 7 HOH A 39 42 42 HOH HOH . 
K 7 HOH A 40 43 43 HOH HOH . 
K 7 HOH A 41 44 44 HOH HOH . 
K 7 HOH A 42 45 45 HOH HOH . 
K 7 HOH A 43 46 46 HOH HOH . 
K 7 HOH A 44 47 47 HOH HOH . 
K 7 HOH A 45 48 48 HOH HOH . 
K 7 HOH A 46 49 49 HOH HOH . 
K 7 HOH A 47 50 50 HOH HOH . 
K 7 HOH A 48 51 51 HOH HOH . 
K 7 HOH A 49 52 52 HOH HOH . 
K 7 HOH A 50 53 53 HOH HOH . 
K 7 HOH A 51 54 54 HOH HOH . 
K 7 HOH A 52 55 55 HOH HOH . 
K 7 HOH A 53 56 56 HOH HOH . 
K 7 HOH A 54 57 57 HOH HOH . 
K 7 HOH A 55 58 58 HOH HOH . 
K 7 HOH A 56 59 59 HOH HOH . 
K 7 HOH A 57 61 61 HOH HOH . 
K 7 HOH A 58 62 62 HOH HOH . 
K 7 HOH A 59 63 63 HOH HOH . 
K 7 HOH A 60 64 64 HOH HOH . 
K 7 HOH A 61 65 65 HOH HOH . 
K 7 HOH A 62 66 66 HOH HOH . 
K 7 HOH A 63 67 67 HOH HOH . 
K 7 HOH A 64 68 68 HOH HOH . 
K 7 HOH A 65 69 69 HOH HOH . 
K 7 HOH A 66 70 70 HOH HOH . 
K 7 HOH A 67 71 71 HOH HOH . 
K 7 HOH A 68 72 72 HOH HOH . 
K 7 HOH A 69 73 73 HOH HOH . 
K 7 HOH A 70 74 74 HOH HOH . 
K 7 HOH A 71 75 75 HOH HOH . 
K 7 HOH A 72 78 78 HOH HOH . 
K 7 HOH A 73 79 79 HOH HOH . 
K 7 HOH A 74 80 80 HOH HOH . 
K 7 HOH A 75 81 81 HOH HOH . 
K 7 HOH A 76 82 82 HOH HOH . 
K 7 HOH A 77 83 83 HOH HOH . 
K 7 HOH A 78 84 84 HOH HOH . 
K 7 HOH A 79 86 86 HOH HOH . 
K 7 HOH A 80 88 88 HOH HOH . 
K 7 HOH A 81 89 89 HOH HOH . 
K 7 HOH A 82 90 90 HOH HOH . 
K 7 HOH A 83 92 92 HOH HOH . 
K 7 HOH A 84 93 93 HOH HOH . 
K 7 HOH A 85 94 94 HOH HOH . 
K 7 HOH A 86 95 95 HOH HOH . 
K 7 HOH A 87 96 96 HOH HOH . 
K 7 HOH A 88 98 98 HOH HOH . 
K 7 HOH A 89 99 99 HOH HOH . 
K 7 HOH A 90 100 100 HOH HOH . 
K 7 HOH A 91 101 101 HOH HOH . 
K 7 HOH A 92 105 105 HOH HOH . 
K 7 HOH A 93 106 106 HOH HOH . 
K 7 HOH A 94 107 107 HOH HOH . 
K 7 HOH A 95 108 108 HOH HOH . 
K 7 HOH A 96 109 109 HOH HOH . 
K 7 HOH A 97 110 110 HOH HOH . 
K 7 HOH A 98 367 367 HOH HOH . 
K 7 HOH A 99 368 368 HOH HOH . 
K 7 HOH A 100 369 369 HOH HOH . 
K 7 HOH A 101 370 370 HOH HOH . 
K 7 HOH A 102 371 371 HOH HOH . 
K 7 HOH A 103 372 372 HOH HOH . 
K 7 HOH A 104 373 373 HOH HOH . 
K 7 HOH A 105 374 374 HOH HOH . 
K 7 HOH A 106 375 375 HOH HOH . 
K 7 HOH A 107 376 376 HOH HOH . 
K 7 HOH A 108 377 377 HOH HOH . 
K 7 HOH A 109 378 378 HOH HOH . 
K 7 HOH A 110 379 379 HOH HOH . 
K 7 HOH A 111 380 380 HOH HOH . 
K 7 HOH A 112 381 381 HOH HOH . 
K 7 HOH A 113 382 382 HOH HOH . 
K 7 HOH A 114 383 383 HOH HOH . 
K 7 HOH A 115 384 384 HOH HOH . 
K 7 HOH A 116 385 385 HOH HOH . 
K 7 HOH A 117 386 386 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . J 6 38.812 -16.114 -10.312 1 22.54 ? N SAH 1501 A 1 
HETATM 2 C CA SAH . . . J 6 38.187 -15.417 -11.514 1 23.72 ? CA SAH 1501 A 1 
HETATM 3 C CB SAH . . . J 6 36.771 -15.741 -11.88 1 24.29 ? CB SAH 1501 A 1 
HETATM 4 C CG SAH . . . J 6 36.449 -17.123 -12.412 1 25.36 ? CG SAH 1501 A 1 
HETATM 5 S SD SAH . . . J 6 37.163 -17.101 -14.121 1 25.51 ? SD SAH 1501 A 1 
HETATM 6 C C SAH . . . J 6 38.407 -13.871 -11.343 1 23.89 ? C SAH 1501 A 1 
HETATM 7 O O SAH . . . J 6 39.02 -13.421 -10.362 1 27.33 ? O SAH 1501 A 1 
HETATM 8 O OXT SAH . . . J 6 37.972 -13.172 -12.329 1 24.07 ? OXT SAH 1501 A 1 
HETATM 9 C C5' SAH . . . J 6 38.22 -18.4 -13.696 1 27.78 ? C5' SAH 1501 A 1 
HETATM 10 C C4' SAH . . . J 6 39.739 -17.989 -13.512 1 26.03 ? C4' SAH 1501 A 1 
HETATM 11 O O4' SAH . . . J 6 39.588 -18.633 -12.272 1 23.62 ? O4' SAH 1501 A 1 
HETATM 12 C C3' SAH . . . J 6 40.691 -19.001 -14.079 1 26.6 ? C3' SAH 1501 A 1 
HETATM 13 O O3' SAH . . . J 6 41.37 -18.571 -15.249 1 29.19 ? O3' SAH 1501 A 1 
HETATM 14 C C2' SAH . . . J 6 41.658 -19.328 -12.873 1 26.72 ? C2' SAH 1501 A 1 
HETATM 15 O O2' SAH . . . J 6 42.692 -18.353 -12.825 1 28.06 ? O2' SAH 1501 A 1 
HETATM 16 C C1' SAH . . . J 6 40.756 -19.232 -11.635 1 25.37 ? C1' SAH 1501 A 1 
HETATM 17 N N9 SAH . . . J 6 40.244 -20.273 -10.978 1 23.87 ? N9 SAH 1501 A 1 
HETATM 18 C C8 SAH . . . J 6 38.975 -20.846 -10.945 1 23.02 ? C8 SAH 1501 A 1 
HETATM 19 N N7 SAH . . . J 6 38.802 -21.879 -10.192 1 20.99 ? N7 SAH 1501 A 1 
HETATM 20 C C5 SAH . . . J 6 40.096 -22.054 -9.639 1 22.13 ? C5 SAH 1501 A 1 
HETATM 21 C C6 SAH . . . J 6 40.599 -23.029 -8.708 1 24.48 ? C6 SAH 1501 A 1 
HETATM 22 N N6 SAH . . . J 6 39.821 -23.99 -8.187 1 23.66 ? N6 SAH 1501 A 1 
HETATM 23 N N1 SAH . . . J 6 41.935 -22.927 -8.39 1 24.23 ? N1 SAH 1501 A 1 
HETATM 24 C C2 SAH . . . J 6 42.758 -21.956 -8.883 1 25.34 ? C2 SAH 1501 A 1 
HETATM 25 N N3 SAH . . . J 6 42.302 -21.004 -9.766 1 24.41 ? N3 SAH 1501 A 1 
HETATM 26 C C4 SAH . . . J 6 40.981 -21.104 -10.101 1 23.12 ? C4 SAH 1501 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#