data_3OS5 # _model_server_result.job_id dZQ7haN_YAh6BLRIgbNoiQ _model_server_result.datetime_utc '2024-12-22 06:03:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3os5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3OS5 # _exptl.entry_id 3OS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OS5 _cell.length_a 101.359 _cell.length_b 38.535 _cell.length_c 66.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C SER 5 B SER 141 1_555 B N MLZ 6 B MLZ 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C MLZ 6 B MLZ 142 1_555 B N SER 7 B SER 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 3OS5 _atom_sites.fract_transf_matrix[1][1] 0.009866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BME A 1 500 500 BME BME . D 4 EDO A 1 391 391 EDO EDO . E 4 EDO A 1 392 392 EDO EDO . F 4 EDO A 1 393 393 EDO EDO . G 4 EDO A 1 394 394 EDO EDO . H 4 EDO A 1 395 395 EDO EDO . I 5 UNL A 1 400 400 UNL UNL . J 6 SAH A 1 1501 1501 SAH SAH . K 7 HOH A 1 1 1 HOH HOH . K 7 HOH A 2 2 2 HOH HOH . K 7 HOH A 3 3 3 HOH HOH . K 7 HOH A 4 4 4 HOH HOH . K 7 HOH A 5 5 5 HOH HOH . K 7 HOH A 6 6 6 HOH HOH . K 7 HOH A 7 7 7 HOH HOH . K 7 HOH A 8 8 8 HOH HOH . K 7 HOH A 9 9 9 HOH HOH . K 7 HOH A 10 10 10 HOH HOH . K 7 HOH A 11 11 11 HOH HOH . K 7 HOH A 12 12 12 HOH HOH . K 7 HOH A 13 13 13 HOH HOH . K 7 HOH A 14 14 14 HOH HOH . K 7 HOH A 15 15 15 HOH HOH . K 7 HOH A 16 16 16 HOH HOH . K 7 HOH A 17 17 17 HOH HOH . K 7 HOH A 18 18 18 HOH HOH . K 7 HOH A 19 19 19 HOH HOH . K 7 HOH A 20 20 20 HOH HOH . K 7 HOH A 21 22 22 HOH HOH . K 7 HOH A 22 23 23 HOH HOH . K 7 HOH A 23 24 24 HOH HOH . K 7 HOH A 24 25 25 HOH HOH . K 7 HOH A 25 26 26 HOH HOH . K 7 HOH A 26 28 28 HOH HOH . K 7 HOH A 27 29 29 HOH HOH . K 7 HOH A 28 30 30 HOH HOH . K 7 HOH A 29 31 31 HOH HOH . K 7 HOH A 30 32 32 HOH HOH . K 7 HOH A 31 34 34 HOH HOH . K 7 HOH A 32 35 35 HOH HOH . K 7 HOH A 33 36 36 HOH HOH . K 7 HOH A 34 37 37 HOH HOH . K 7 HOH A 35 38 38 HOH HOH . K 7 HOH A 36 39 39 HOH HOH . K 7 HOH A 37 40 40 HOH HOH . K 7 HOH A 38 41 41 HOH HOH . K 7 HOH A 39 42 42 HOH HOH . K 7 HOH A 40 43 43 HOH HOH . K 7 HOH A 41 44 44 HOH HOH . K 7 HOH A 42 45 45 HOH HOH . K 7 HOH A 43 46 46 HOH HOH . K 7 HOH A 44 47 47 HOH HOH . K 7 HOH A 45 48 48 HOH HOH . K 7 HOH A 46 49 49 HOH HOH . K 7 HOH A 47 50 50 HOH HOH . K 7 HOH A 48 51 51 HOH HOH . K 7 HOH A 49 52 52 HOH HOH . K 7 HOH A 50 53 53 HOH HOH . K 7 HOH A 51 54 54 HOH HOH . K 7 HOH A 52 55 55 HOH HOH . K 7 HOH A 53 56 56 HOH HOH . K 7 HOH A 54 57 57 HOH HOH . K 7 HOH A 55 58 58 HOH HOH . K 7 HOH A 56 59 59 HOH HOH . K 7 HOH A 57 61 61 HOH HOH . K 7 HOH A 58 62 62 HOH HOH . K 7 HOH A 59 63 63 HOH HOH . K 7 HOH A 60 64 64 HOH HOH . K 7 HOH A 61 65 65 HOH HOH . K 7 HOH A 62 66 66 HOH HOH . K 7 HOH A 63 67 67 HOH HOH . K 7 HOH A 64 68 68 HOH HOH . K 7 HOH A 65 69 69 HOH HOH . K 7 HOH A 66 70 70 HOH HOH . K 7 HOH A 67 71 71 HOH HOH . K 7 HOH A 68 72 72 HOH HOH . K 7 HOH A 69 73 73 HOH HOH . K 7 HOH A 70 74 74 HOH HOH . K 7 HOH A 71 75 75 HOH HOH . K 7 HOH A 72 78 78 HOH HOH . K 7 HOH A 73 79 79 HOH HOH . K 7 HOH A 74 80 80 HOH HOH . K 7 HOH A 75 81 81 HOH HOH . K 7 HOH A 76 82 82 HOH HOH . K 7 HOH A 77 83 83 HOH HOH . K 7 HOH A 78 84 84 HOH HOH . K 7 HOH A 79 86 86 HOH HOH . K 7 HOH A 80 88 88 HOH HOH . K 7 HOH A 81 89 89 HOH HOH . K 7 HOH A 82 90 90 HOH HOH . K 7 HOH A 83 92 92 HOH HOH . K 7 HOH A 84 93 93 HOH HOH . K 7 HOH A 85 94 94 HOH HOH . K 7 HOH A 86 95 95 HOH HOH . K 7 HOH A 87 96 96 HOH HOH . K 7 HOH A 88 98 98 HOH HOH . K 7 HOH A 89 99 99 HOH HOH . K 7 HOH A 90 100 100 HOH HOH . K 7 HOH A 91 101 101 HOH HOH . K 7 HOH A 92 105 105 HOH HOH . K 7 HOH A 93 106 106 HOH HOH . K 7 HOH A 94 107 107 HOH HOH . K 7 HOH A 95 108 108 HOH HOH . K 7 HOH A 96 109 109 HOH HOH . K 7 HOH A 97 110 110 HOH HOH . K 7 HOH A 98 367 367 HOH HOH . K 7 HOH A 99 368 368 HOH HOH . K 7 HOH A 100 369 369 HOH HOH . K 7 HOH A 101 370 370 HOH HOH . K 7 HOH A 102 371 371 HOH HOH . K 7 HOH A 103 372 372 HOH HOH . K 7 HOH A 104 373 373 HOH HOH . K 7 HOH A 105 374 374 HOH HOH . K 7 HOH A 106 375 375 HOH HOH . K 7 HOH A 107 376 376 HOH HOH . K 7 HOH A 108 377 377 HOH HOH . K 7 HOH A 109 378 378 HOH HOH . K 7 HOH A 110 379 379 HOH HOH . K 7 HOH A 111 380 380 HOH HOH . K 7 HOH A 112 381 381 HOH HOH . K 7 HOH A 113 382 382 HOH HOH . K 7 HOH A 114 383 383 HOH HOH . K 7 HOH A 115 384 384 HOH HOH . K 7 HOH A 116 385 385 HOH HOH . K 7 HOH A 117 386 386 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . C 3 24.299 -5.581 -29.619 1 40.35 ? C1 BME 500 A 1 HETATM 2 C C2 BME . . . C 3 23.713 -5.746 -28.219 1 41.63 ? C2 BME 500 A 1 HETATM 3 O O1 BME . . . C 3 23.249 -5.238 -30.526 1 41.14 ? O1 BME 500 A 1 HETATM 4 S S2 BME . . . C 3 25.034 -6.182 -27.057 1 38.9 ? S2 BME 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #