data_3OSK
#
_model_server_result.job_id            SHfIMJALXD-0dmkGPvKdfw 
_model_server_result.datetime_utc      '2024-12-26 12:57:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3osk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":133}' 
#
_entry.id    3OSK 
#
_exptl.entry_id    3OSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OSK 
_cell.length_a            43.864 
_cell.length_b            51.457 
_cell.length_c            102.849 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 50 A CYS 50 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 122 A CYS 122 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 23 B CYS 23 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 50 B CYS 50 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 C C1 NAG . A NAG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 B ND2 ASN 78 B ASN 78 1_555 F C1 NAG . B NAG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3OSK 
_atom_sites.fract_transf_matrix[1][1]    0.022798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019434 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 131 1 NAG NAG . 
D 3 GOL A 1 132 1 GOL GOL . 
E 3 GOL A 1 133 2 GOL GOL . 
F 2 NAG B 1 131 1 NAG NAG . 
G 4 HOH A 1 134 1 HOH HOH . 
G 4 HOH A 2 135 2 HOH HOH . 
G 4 HOH A 3 136 136 HOH HOH . 
G 4 HOH A 4 137 137 HOH HOH . 
G 4 HOH A 5 138 138 HOH HOH . 
G 4 HOH A 6 139 139 HOH HOH . 
G 4 HOH A 7 140 3 HOH HOH . 
G 4 HOH A 8 141 141 HOH HOH . 
G 4 HOH A 9 142 4 HOH HOH . 
G 4 HOH A 10 143 143 HOH HOH . 
G 4 HOH A 11 144 6 HOH HOH . 
G 4 HOH A 12 145 7 HOH HOH . 
G 4 HOH A 13 146 8 HOH HOH . 
G 4 HOH A 14 147 147 HOH HOH . 
G 4 HOH A 15 148 9 HOH HOH . 
G 4 HOH A 16 149 10 HOH HOH . 
G 4 HOH A 17 150 11 HOH HOH . 
G 4 HOH A 18 151 12 HOH HOH . 
G 4 HOH A 19 152 13 HOH HOH . 
G 4 HOH A 20 153 14 HOH HOH . 
G 4 HOH A 21 154 154 HOH HOH . 
G 4 HOH A 22 155 155 HOH HOH . 
G 4 HOH A 23 156 15 HOH HOH . 
G 4 HOH A 24 157 16 HOH HOH . 
G 4 HOH A 25 158 158 HOH HOH . 
G 4 HOH A 26 159 159 HOH HOH . 
G 4 HOH A 27 160 160 HOH HOH . 
G 4 HOH A 28 161 17 HOH HOH . 
G 4 HOH A 29 162 18 HOH HOH . 
G 4 HOH A 30 163 163 HOH HOH . 
G 4 HOH A 31 164 164 HOH HOH . 
G 4 HOH A 32 165 165 HOH HOH . 
G 4 HOH A 33 166 19 HOH HOH . 
G 4 HOH A 34 167 21 HOH HOH . 
G 4 HOH A 35 168 22 HOH HOH . 
G 4 HOH A 36 169 23 HOH HOH . 
G 4 HOH A 37 170 170 HOH HOH . 
G 4 HOH A 38 171 171 HOH HOH . 
G 4 HOH A 39 172 172 HOH HOH . 
G 4 HOH A 40 173 24 HOH HOH . 
G 4 HOH A 41 174 174 HOH HOH . 
G 4 HOH A 42 175 25 HOH HOH . 
G 4 HOH A 43 176 26 HOH HOH . 
G 4 HOH A 44 177 28 HOH HOH . 
G 4 HOH A 45 178 29 HOH HOH . 
G 4 HOH A 46 179 179 HOH HOH . 
G 4 HOH A 47 180 180 HOH HOH . 
G 4 HOH A 48 181 30 HOH HOH . 
G 4 HOH A 49 182 182 HOH HOH . 
G 4 HOH A 50 183 183 HOH HOH . 
G 4 HOH A 51 184 184 HOH HOH . 
G 4 HOH A 52 185 185 HOH HOH . 
G 4 HOH A 53 186 186 HOH HOH . 
G 4 HOH A 54 187 187 HOH HOH . 
G 4 HOH A 55 188 31 HOH HOH . 
G 4 HOH A 56 189 189 HOH HOH . 
G 4 HOH A 57 190 190 HOH HOH . 
G 4 HOH A 58 191 32 HOH HOH . 
G 4 HOH A 59 192 33 HOH HOH . 
G 4 HOH A 60 193 193 HOH HOH . 
G 4 HOH A 61 194 194 HOH HOH . 
G 4 HOH A 62 195 195 HOH HOH . 
G 4 HOH A 63 196 34 HOH HOH . 
G 4 HOH A 64 197 36 HOH HOH . 
G 4 HOH A 65 198 198 HOH HOH . 
G 4 HOH A 66 199 199 HOH HOH . 
G 4 HOH A 67 200 39 HOH HOH . 
G 4 HOH A 68 201 201 HOH HOH . 
G 4 HOH A 69 202 202 HOH HOH . 
G 4 HOH A 70 203 41 HOH HOH . 
G 4 HOH A 71 204 204 HOH HOH . 
G 4 HOH A 72 205 42 HOH HOH . 
G 4 HOH A 73 206 43 HOH HOH . 
G 4 HOH A 74 207 44 HOH HOH . 
G 4 HOH A 75 208 208 HOH HOH . 
G 4 HOH A 76 209 209 HOH HOH . 
G 4 HOH A 77 210 210 HOH HOH . 
G 4 HOH A 78 211 45 HOH HOH . 
G 4 HOH A 79 212 212 HOH HOH . 
G 4 HOH A 80 213 213 HOH HOH . 
G 4 HOH A 81 214 48 HOH HOH . 
G 4 HOH A 82 215 49 HOH HOH . 
G 4 HOH A 83 216 216 HOH HOH . 
G 4 HOH A 84 217 50 HOH HOH . 
G 4 HOH A 85 218 52 HOH HOH . 
G 4 HOH A 86 219 219 HOH HOH . 
G 4 HOH A 87 220 53 HOH HOH . 
G 4 HOH A 88 221 54 HOH HOH . 
G 4 HOH A 89 222 55 HOH HOH . 
G 4 HOH A 90 223 223 HOH HOH . 
G 4 HOH A 91 224 56 HOH HOH . 
G 4 HOH A 92 225 60 HOH HOH . 
G 4 HOH A 93 226 226 HOH HOH . 
G 4 HOH A 94 227 227 HOH HOH . 
G 4 HOH A 95 228 228 HOH HOH . 
G 4 HOH A 96 229 61 HOH HOH . 
G 4 HOH A 97 230 62 HOH HOH . 
G 4 HOH A 98 231 64 HOH HOH . 
G 4 HOH A 99 232 66 HOH HOH . 
G 4 HOH A 100 233 67 HOH HOH . 
G 4 HOH A 101 234 68 HOH HOH . 
G 4 HOH A 102 235 69 HOH HOH . 
G 4 HOH A 103 236 73 HOH HOH . 
G 4 HOH A 104 237 79 HOH HOH . 
G 4 HOH A 105 238 82 HOH HOH . 
G 4 HOH A 106 239 84 HOH HOH . 
G 4 HOH A 107 240 87 HOH HOH . 
G 4 HOH A 108 241 88 HOH HOH . 
G 4 HOH A 109 242 89 HOH HOH . 
G 4 HOH A 110 243 90 HOH HOH . 
G 4 HOH A 111 244 91 HOH HOH . 
G 4 HOH A 112 245 92 HOH HOH . 
G 4 HOH A 113 246 93 HOH HOH . 
G 4 HOH A 114 247 94 HOH HOH . 
G 4 HOH A 115 248 96 HOH HOH . 
G 4 HOH A 116 249 97 HOH HOH . 
G 4 HOH A 117 250 98 HOH HOH . 
G 4 HOH A 118 251 99 HOH HOH . 
G 4 HOH A 119 252 101 HOH HOH . 
G 4 HOH A 120 253 102 HOH HOH . 
G 4 HOH A 121 254 105 HOH HOH . 
G 4 HOH A 122 255 106 HOH HOH . 
G 4 HOH A 123 256 107 HOH HOH . 
G 4 HOH A 124 257 108 HOH HOH . 
G 4 HOH A 125 258 109 HOH HOH . 
G 4 HOH A 126 259 110 HOH HOH . 
G 4 HOH A 127 260 111 HOH HOH . 
G 4 HOH A 128 261 112 HOH HOH . 
G 4 HOH A 129 262 114 HOH HOH . 
G 4 HOH A 130 263 115 HOH HOH . 
G 4 HOH A 131 264 117 HOH HOH . 
G 4 HOH A 132 265 118 HOH HOH . 
G 4 HOH A 133 266 120 HOH HOH . 
G 4 HOH A 134 267 121 HOH HOH . 
G 4 HOH A 135 268 124 HOH HOH . 
G 4 HOH A 136 269 127 HOH HOH . 
G 4 HOH A 137 270 130 HOH HOH . 
G 4 HOH A 138 271 131 HOH HOH . 
G 4 HOH A 139 272 132 HOH HOH . 
G 4 HOH A 140 273 133 HOH HOH . 
G 4 HOH A 141 274 191 HOH HOH . 
G 4 HOH A 142 275 222 HOH HOH . 
H 4 HOH B 1 132 5 HOH HOH . 
H 4 HOH B 2 133 20 HOH HOH . 
H 4 HOH B 3 134 134 HOH HOH . 
H 4 HOH B 4 135 135 HOH HOH . 
H 4 HOH B 5 136 27 HOH HOH . 
H 4 HOH B 6 137 35 HOH HOH . 
H 4 HOH B 7 138 37 HOH HOH . 
H 4 HOH B 8 139 38 HOH HOH . 
H 4 HOH B 9 140 140 HOH HOH . 
H 4 HOH B 10 141 40 HOH HOH . 
H 4 HOH B 11 142 142 HOH HOH . 
H 4 HOH B 12 143 46 HOH HOH . 
H 4 HOH B 13 144 144 HOH HOH . 
H 4 HOH B 14 145 145 HOH HOH . 
H 4 HOH B 15 146 146 HOH HOH . 
H 4 HOH B 16 147 47 HOH HOH . 
H 4 HOH B 17 148 148 HOH HOH . 
H 4 HOH B 18 149 149 HOH HOH . 
H 4 HOH B 19 150 150 HOH HOH . 
H 4 HOH B 20 151 151 HOH HOH . 
H 4 HOH B 21 152 152 HOH HOH . 
H 4 HOH B 22 153 153 HOH HOH . 
H 4 HOH B 23 154 51 HOH HOH . 
H 4 HOH B 24 155 57 HOH HOH . 
H 4 HOH B 25 156 156 HOH HOH . 
H 4 HOH B 26 157 157 HOH HOH . 
H 4 HOH B 27 158 58 HOH HOH . 
H 4 HOH B 28 159 59 HOH HOH . 
H 4 HOH B 29 160 63 HOH HOH . 
H 4 HOH B 30 161 161 HOH HOH . 
H 4 HOH B 31 162 162 HOH HOH . 
H 4 HOH B 32 163 65 HOH HOH . 
H 4 HOH B 33 164 70 HOH HOH . 
H 4 HOH B 34 165 71 HOH HOH . 
H 4 HOH B 35 166 166 HOH HOH . 
H 4 HOH B 36 167 167 HOH HOH . 
H 4 HOH B 37 168 168 HOH HOH . 
H 4 HOH B 38 169 169 HOH HOH . 
H 4 HOH B 39 170 72 HOH HOH . 
H 4 HOH B 40 171 74 HOH HOH . 
H 4 HOH B 41 172 75 HOH HOH . 
H 4 HOH B 42 173 173 HOH HOH . 
H 4 HOH B 43 174 76 HOH HOH . 
H 4 HOH B 44 175 175 HOH HOH . 
H 4 HOH B 45 176 176 HOH HOH . 
H 4 HOH B 46 177 177 HOH HOH . 
H 4 HOH B 47 178 178 HOH HOH . 
H 4 HOH B 48 179 77 HOH HOH . 
H 4 HOH B 49 180 78 HOH HOH . 
H 4 HOH B 50 181 181 HOH HOH . 
H 4 HOH B 51 182 80 HOH HOH . 
H 4 HOH B 52 183 81 HOH HOH . 
H 4 HOH B 53 184 83 HOH HOH . 
H 4 HOH B 54 185 85 HOH HOH . 
H 4 HOH B 55 186 86 HOH HOH . 
H 4 HOH B 56 187 95 HOH HOH . 
H 4 HOH B 57 188 188 HOH HOH . 
H 4 HOH B 58 189 100 HOH HOH . 
H 4 HOH B 59 190 103 HOH HOH . 
H 4 HOH B 60 192 192 HOH HOH . 
H 4 HOH B 61 193 104 HOH HOH . 
H 4 HOH B 62 194 113 HOH HOH . 
H 4 HOH B 63 195 116 HOH HOH . 
H 4 HOH B 64 196 196 HOH HOH . 
H 4 HOH B 65 197 197 HOH HOH . 
H 4 HOH B 66 198 119 HOH HOH . 
H 4 HOH B 67 199 122 HOH HOH . 
H 4 HOH B 68 200 200 HOH HOH . 
H 4 HOH B 69 201 123 HOH HOH . 
H 4 HOH B 70 202 125 HOH HOH . 
H 4 HOH B 71 203 203 HOH HOH . 
H 4 HOH B 72 204 126 HOH HOH . 
H 4 HOH B 73 205 205 HOH HOH . 
H 4 HOH B 74 206 206 HOH HOH . 
H 4 HOH B 75 207 207 HOH HOH . 
H 4 HOH B 76 208 128 HOH HOH . 
H 4 HOH B 77 209 129 HOH HOH . 
H 4 HOH B 78 211 211 HOH HOH . 
H 4 HOH B 79 214 214 HOH HOH . 
H 4 HOH B 80 215 215 HOH HOH . 
H 4 HOH B 81 217 217 HOH HOH . 
H 4 HOH B 82 218 218 HOH HOH . 
H 4 HOH B 83 220 220 HOH HOH . 
H 4 HOH B 84 221 221 HOH HOH . 
H 4 HOH B 85 224 224 HOH HOH . 
H 4 HOH B 86 225 225 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 -8.53 0.518 5.15 1 41.65 ? C1 GOL 133 A 1 
HETATM 2 O O1 GOL . . . E 3 -7.263 0.548 5.775 1 34.27 ? O1 GOL 133 A 1 
HETATM 3 C C2 GOL . . . E 3 -8.915 -0.895 4.716 1 50.39 ? C2 GOL 133 A 1 
HETATM 4 O O2 GOL . . . E 3 -7.868 -1.798 4.974 1 48.42 ? O2 GOL 133 A 1 
HETATM 5 C C3 GOL . . . E 3 -10.199 -1.343 5.418 1 57.94 ? C3 GOL 133 A 1 
HETATM 6 O O3 GOL . . . E 3 -10.551 -2.649 5.01 1 56.87 ? O3 GOL 133 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#