data_3OSO
#
_model_server_result.job_id            iehL0kqkMaTXPcJIRXd9-w 
_model_server_result.datetime_utc      '2024-10-11 10:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":150}' 
#
_entry.id    3OSO 
#
_exptl.entry_id    3OSO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.188 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "THYMIDINE-3',5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.94 
_cell.angle_gamma         90 
_cell.entry_id            3OSO 
_cell.length_a            31.143 
_cell.length_b            60.252 
_cell.length_c            38.013 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OSO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? 
metalc ? metalc4 A OE2 GLU 43 A GLU 43 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc5 B O4P THP . A THP 150 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? 
metalc ? metalc6 C CA CA . A CA 151 1_555 D O HOH . A HOH 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc7 C CA CA . A CA 151 1_555 D O HOH . A HOH 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
#
_chem_comp.formula           'C10 H16 N2 O11 P2' 
_chem_comp.formula_weight    402.188 
_chem_comp.id                THP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2 O4P THP doub 277 n n 
P2 O5P THP sing 278 n n 
P2 O6P THP sing 279 n n 
P2 O5' THP sing 280 n n 
O5P HOP5 THP sing 281 n n 
O6P HOP6 THP sing 282 n n 
P1 O1P THP doub 283 n n 
P1 O2P THP sing 284 n n 
P1 O3P THP sing 285 n n 
P1 O3' THP sing 286 n n 
O2P HOP2 THP sing 287 n n 
O3P HOP3 THP sing 288 n n 
O5' C5' THP sing 289 n n 
C5' C4' THP sing 290 n n 
C5' "H5'1" THP sing 291 n n 
C5' "H5'2" THP sing 292 n n 
C4' O4' THP sing 293 n n 
C4' C3' THP sing 294 n n 
C4' H4' THP sing 295 n n 
O4' C1' THP sing 296 n n 
C3' O3' THP sing 297 n n 
C3' C2' THP sing 298 n n 
C3' H3' THP sing 299 n n 
C2' C1' THP sing 300 n n 
C2' "H2'1" THP sing 301 n n 
C2' "H2'2" THP sing 302 n n 
C1' N1 THP sing 303 n n 
C1' H1' THP sing 304 n n 
N1 C2 THP sing 305 n n 
N1 C6 THP sing 306 n n 
C2 O2 THP doub 307 n n 
C2 N3 THP sing 308 n n 
N3 C4 THP sing 309 n n 
N3 H3 THP sing 310 n n 
C4 O4 THP doub 311 n n 
C4 C5 THP sing 312 n n 
C5 C5M THP sing 313 n n 
C5 C6 THP doub 314 n n 
C5M H51 THP sing 315 n n 
C5M H52 THP sing 316 n n 
C5M H53 THP sing 317 n n 
C6 H6 THP sing 318 n n 
#
_atom_sites.entry_id                     3OSO 
_atom_sites.fract_transf_matrix[1][1]    0.03211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002775 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 THP A 1 150 1 THP THP . 
C 3 CA A 1 151 1 CA CA . 
D 4 HOH A 1 44 44 HOH HOH . 
D 4 HOH A 2 45 45 HOH HOH . 
D 4 HOH A 3 46 46 HOH HOH . 
D 4 HOH A 4 47 47 HOH HOH . 
D 4 HOH A 5 152 1 HOH HOH . 
D 4 HOH A 6 153 2 HOH HOH . 
D 4 HOH A 7 154 3 HOH HOH . 
D 4 HOH A 8 155 4 HOH HOH . 
D 4 HOH A 9 156 5 HOH HOH . 
D 4 HOH A 10 157 6 HOH HOH . 
D 4 HOH A 11 158 7 HOH HOH . 
D 4 HOH A 12 159 8 HOH HOH . 
D 4 HOH A 13 160 9 HOH HOH . 
D 4 HOH A 14 161 10 HOH HOH . 
D 4 HOH A 15 162 11 HOH HOH . 
D 4 HOH A 16 163 12 HOH HOH . 
D 4 HOH A 17 164 13 HOH HOH . 
D 4 HOH A 18 165 14 HOH HOH . 
D 4 HOH A 19 166 15 HOH HOH . 
D 4 HOH A 20 167 16 HOH HOH . 
D 4 HOH A 21 168 17 HOH HOH . 
D 4 HOH A 22 169 18 HOH HOH . 
D 4 HOH A 23 170 19 HOH HOH . 
D 4 HOH A 24 171 20 HOH HOH . 
D 4 HOH A 25 172 1 HOH HOH . 
D 4 HOH A 26 173 2 HOH HOH . 
D 4 HOH A 27 174 3 HOH HOH . 
D 4 HOH A 28 175 4 HOH HOH . 
D 4 HOH A 29 176 5 HOH HOH . 
D 4 HOH A 30 177 6 HOH HOH . 
D 4 HOH A 31 178 7 HOH HOH . 
D 4 HOH A 32 179 8 HOH HOH . 
D 4 HOH A 33 180 9 HOH HOH . 
D 4 HOH A 34 181 10 HOH HOH . 
D 4 HOH A 35 182 11 HOH HOH . 
D 4 HOH A 36 183 13 HOH HOH . 
D 4 HOH A 37 184 14 HOH HOH . 
D 4 HOH A 38 185 15 HOH HOH . 
D 4 HOH A 39 186 16 HOH HOH . 
D 4 HOH A 40 187 17 HOH HOH . 
D 4 HOH A 41 188 18 HOH HOH . 
D 4 HOH A 42 189 19 HOH HOH . 
D 4 HOH A 43 190 20 HOH HOH . 
D 4 HOH A 44 191 21 HOH HOH . 
D 4 HOH A 45 192 22 HOH HOH . 
D 4 HOH A 46 193 23 HOH HOH . 
D 4 HOH A 47 194 24 HOH HOH . 
D 4 HOH A 48 195 25 HOH HOH . 
D 4 HOH A 49 196 26 HOH HOH . 
D 4 HOH A 50 197 27 HOH HOH . 
D 4 HOH A 51 198 29 HOH HOH . 
D 4 HOH A 52 199 30 HOH HOH . 
D 4 HOH A 53 200 31 HOH HOH . 
D 4 HOH A 54 201 32 HOH HOH . 
D 4 HOH A 55 202 33 HOH HOH . 
D 4 HOH A 56 203 34 HOH HOH . 
D 4 HOH A 57 204 35 HOH HOH . 
D 4 HOH A 58 205 36 HOH HOH . 
D 4 HOH A 59 206 37 HOH HOH . 
D 4 HOH A 60 207 38 HOH HOH . 
D 4 HOH A 61 208 39 HOH HOH . 
D 4 HOH A 62 209 40 HOH HOH . 
D 4 HOH A 63 210 41 HOH HOH . 
D 4 HOH A 64 211 42 HOH HOH . 
D 4 HOH A 65 212 43 HOH HOH . 
D 4 HOH A 66 213 50 HOH HOH . 
D 4 HOH A 67 214 51 HOH HOH . 
D 4 HOH A 68 215 52 HOH HOH . 
D 4 HOH A 69 216 53 HOH HOH . 
D 4 HOH A 70 217 54 HOH HOH . 
D 4 HOH A 71 218 55 HOH HOH . 
D 4 HOH A 72 219 56 HOH HOH . 
D 4 HOH A 73 220 57 HOH HOH . 
D 4 HOH A 74 221 58 HOH HOH . 
D 4 HOH A 75 222 59 HOH HOH . 
D 4 HOH A 76 223 60 HOH HOH . 
D 4 HOH A 77 224 61 HOH HOH . 
D 4 HOH A 78 225 62 HOH HOH . 
D 4 HOH A 79 226 63 HOH HOH . 
D 4 HOH A 80 227 64 HOH HOH . 
D 4 HOH A 81 228 65 HOH HOH . 
D 4 HOH A 82 229 67 HOH HOH . 
D 4 HOH A 83 230 68 HOH HOH . 
D 4 HOH A 84 231 69 HOH HOH . 
D 4 HOH A 85 232 71 HOH HOH . 
D 4 HOH A 86 233 72 HOH HOH . 
D 4 HOH A 87 234 73 HOH HOH . 
D 4 HOH A 88 235 74 HOH HOH . 
D 4 HOH A 89 236 75 HOH HOH . 
D 4 HOH A 90 237 76 HOH HOH . 
D 4 HOH A 91 238 77 HOH HOH . 
D 4 HOH A 92 239 78 HOH HOH . 
D 4 HOH A 93 240 1 HOH HOH . 
D 4 HOH A 94 241 2 HOH HOH . 
D 4 HOH A 95 242 2 HOH HOH . 
D 4 HOH A 96 243 1 HOH HOH . 
D 4 HOH A 97 244 1 HOH HOH . 
D 4 HOH A 98 245 1 HOH HOH . 
D 4 HOH A 99 246 1 HOH HOH . 
D 4 HOH A 100 247 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2 THP . . . B 2 17.849 11.3 5.119 1 14.55 ? P2 THP 150 A 1 
HETATM 2 O O4P THP . . . B 2 16.641 12.021 5.645 1 13.65 ? O4P THP 150 A 1 
HETATM 3 O O5P THP . . . B 2 17.848 9.767 5.391 1 13.6 ? O5P THP 150 A 1 
HETATM 4 O O6P THP . . . B 2 19.107 12.062 5.704 1 17.23 ? O6P THP 150 A 1 
HETATM 5 P P1 THP . . . B 2 21.073 14.913 1.354 1 16.79 ? P1 THP 150 A 1 
HETATM 6 O O1P THP . . . B 2 22.08 15.535 0.475 1 21.25 ? O1P THP 150 A 1 
HETATM 7 O O2P THP . . . B 2 20.423 15.843 2.426 1 17.04 ? O2P THP 150 A 1 
HETATM 8 O O3P THP . . . B 2 21.809 13.724 2.132 1 19.92 ? O3P THP 150 A 1 
HETATM 9 O O5' THP . . . B 2 17.877 11.371 3.51 1 14.53 ? O5' THP 150 A 1 
HETATM 10 C C5' THP . . . B 2 17.879 12.71 2.951 1 18.86 ? C5' THP 150 A 1 
HETATM 11 C C4' THP . . . B 2 18.777 12.629 1.707 1 16.46 ? C4' THP 150 A 1 
HETATM 12 O O4' THP . . . B 2 18.335 11.554 0.832 1 14.3 ? O4' THP 150 A 1 
HETATM 13 C C3' THP . . . B 2 18.735 13.95 0.858 1 16.15 ? C3' THP 150 A 1 
HETATM 14 O O3' THP . . . B 2 20.034 14.236 0.319 1 15.75 ? O3' THP 150 A 1 
HETATM 15 C C2' THP . . . B 2 17.841 13.564 -0.363 1 13.76 ? C2' THP 150 A 1 
HETATM 16 C C1' THP . . . B 2 18.061 12.013 -0.501 1 12.91 ? C1' THP 150 A 1 
HETATM 17 N N1 THP . . . B 2 16.759 11.378 -0.831 1 12.38 ? N1 THP 150 A 1 
HETATM 18 C C2 THP . . . B 2 16.515 11.204 -2.151 1 13.17 ? C2 THP 150 A 1 
HETATM 19 O O2 THP . . . B 2 17.375 11.562 -2.992 1 15.62 ? O2 THP 150 A 1 
HETATM 20 N N3 THP . . . B 2 15.32 10.723 -2.588 1 13.71 ? N3 THP 150 A 1 
HETATM 21 C C4 THP . . . B 2 14.338 10.37 -1.723 1 13.12 ? C4 THP 150 A 1 
HETATM 22 O O4 THP . . . B 2 13.251 10.017 -2.164 1 13.76 ? O4 THP 150 A 1 
HETATM 23 C C5 THP . . . B 2 14.593 10.552 -0.32 1 11.72 ? C5 THP 150 A 1 
HETATM 24 C C5M THP . . . B 2 13.563 10.151 0.702 1 12.34 ? C5M THP 150 A 1 
HETATM 25 C C6 THP . . . B 2 15.799 11.021 0.083 1 11.97 ? C6 THP 150 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           25 
#