data_3OTD # _model_server_result.job_id 4J451am6AmxAcHBcXS7LLg _model_server_result.datetime_utc '2024-11-04 18:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3otd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":273}' # _entry.id 3OTD # _exptl.entry_id 3OTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OTD _cell.length_a 140.574 _cell.length_b 140.574 _cell.length_c 80.962 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 80.962 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OTD _atom_sites.fract_transf_matrix[1][1] 0.007114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 270 2 IOD IOD . D 2 IOD A 1 271 3 IOD IOD . E 2 IOD A 1 272 4 IOD IOD . F 2 IOD A 1 273 8 IOD IOD . G 2 IOD A 1 274 9 IOD IOD . H 2 IOD A 1 275 10 IOD IOD . I 2 IOD B 1 270 1 IOD IOD . J 2 IOD B 1 271 5 IOD IOD . K 2 IOD B 1 272 6 IOD IOD . L 2 IOD B 1 273 7 IOD IOD . M 3 HOH A 1 276 2 HOH TIP . M 3 HOH A 2 277 3 HOH TIP . M 3 HOH A 3 278 4 HOH TIP . M 3 HOH A 4 279 5 HOH TIP . M 3 HOH A 5 280 6 HOH TIP . M 3 HOH A 6 281 7 HOH TIP . M 3 HOH A 7 282 8 HOH TIP . M 3 HOH A 8 283 11 HOH TIP . M 3 HOH A 9 284 12 HOH TIP . M 3 HOH A 10 285 14 HOH TIP . M 3 HOH A 11 286 15 HOH TIP . M 3 HOH A 12 287 16 HOH TIP . M 3 HOH A 13 288 19 HOH TIP . M 3 HOH A 14 289 21 HOH TIP . M 3 HOH A 15 290 22 HOH TIP . M 3 HOH A 16 291 23 HOH TIP . M 3 HOH A 17 292 24 HOH TIP . M 3 HOH A 18 293 26 HOH TIP . M 3 HOH A 19 294 28 HOH TIP . M 3 HOH A 20 295 29 HOH TIP . M 3 HOH A 21 296 30 HOH TIP . M 3 HOH A 22 297 33 HOH TIP . M 3 HOH A 23 298 36 HOH TIP . M 3 HOH A 24 299 37 HOH TIP . M 3 HOH A 25 300 38 HOH TIP . M 3 HOH A 26 301 39 HOH TIP . M 3 HOH A 27 302 41 HOH TIP . M 3 HOH A 28 303 43 HOH TIP . M 3 HOH A 29 304 44 HOH TIP . M 3 HOH A 30 305 45 HOH TIP . M 3 HOH A 31 306 47 HOH TIP . M 3 HOH A 32 307 48 HOH TIP . M 3 HOH A 33 308 54 HOH TIP . M 3 HOH A 34 309 55 HOH TIP . M 3 HOH A 35 310 56 HOH TIP . M 3 HOH A 36 311 59 HOH TIP . M 3 HOH A 37 312 60 HOH TIP . M 3 HOH A 38 313 63 HOH TIP . M 3 HOH A 39 314 65 HOH TIP . M 3 HOH A 40 315 68 HOH TIP . M 3 HOH A 41 316 73 HOH TIP . M 3 HOH A 42 317 76 HOH TIP . M 3 HOH A 43 318 77 HOH TIP . M 3 HOH A 44 319 80 HOH TIP . M 3 HOH A 45 320 81 HOH TIP . M 3 HOH A 46 321 82 HOH TIP . M 3 HOH A 47 322 84 HOH TIP . M 3 HOH A 48 323 86 HOH TIP . M 3 HOH A 49 324 89 HOH TIP . M 3 HOH A 50 325 91 HOH TIP . M 3 HOH A 51 326 92 HOH TIP . M 3 HOH A 52 327 94 HOH TIP . M 3 HOH A 53 328 95 HOH TIP . M 3 HOH A 54 329 97 HOH TIP . M 3 HOH A 55 330 100 HOH TIP . M 3 HOH A 56 331 103 HOH TIP . M 3 HOH A 57 332 107 HOH TIP . M 3 HOH A 58 333 58 HOH TIP . M 3 HOH A 59 334 99 HOH TIP . N 3 HOH B 1 274 1 HOH TIP . N 3 HOH B 2 275 9 HOH TIP . N 3 HOH B 3 276 10 HOH TIP . N 3 HOH B 4 277 13 HOH TIP . N 3 HOH B 5 278 17 HOH TIP . N 3 HOH B 6 279 18 HOH TIP . N 3 HOH B 7 280 20 HOH TIP . N 3 HOH B 8 281 25 HOH TIP . N 3 HOH B 9 282 27 HOH TIP . N 3 HOH B 10 283 31 HOH TIP . N 3 HOH B 11 284 32 HOH TIP . N 3 HOH B 12 285 34 HOH TIP . N 3 HOH B 13 286 35 HOH TIP . N 3 HOH B 14 287 40 HOH TIP . N 3 HOH B 15 288 42 HOH TIP . N 3 HOH B 16 289 46 HOH TIP . N 3 HOH B 17 290 49 HOH TIP . N 3 HOH B 18 291 50 HOH TIP . N 3 HOH B 19 292 51 HOH TIP . N 3 HOH B 20 293 52 HOH TIP . N 3 HOH B 21 294 53 HOH TIP . N 3 HOH B 22 295 57 HOH TIP . N 3 HOH B 23 297 61 HOH TIP . N 3 HOH B 24 298 62 HOH TIP . N 3 HOH B 25 299 64 HOH TIP . N 3 HOH B 26 300 66 HOH TIP . N 3 HOH B 27 301 67 HOH TIP . N 3 HOH B 28 302 69 HOH TIP . N 3 HOH B 29 303 70 HOH TIP . N 3 HOH B 30 304 71 HOH TIP . N 3 HOH B 31 305 72 HOH TIP . N 3 HOH B 32 306 74 HOH TIP . N 3 HOH B 33 307 75 HOH TIP . N 3 HOH B 34 308 78 HOH TIP . N 3 HOH B 35 309 79 HOH TIP . N 3 HOH B 36 310 83 HOH TIP . N 3 HOH B 37 311 85 HOH TIP . N 3 HOH B 38 312 87 HOH TIP . N 3 HOH B 39 313 88 HOH TIP . N 3 HOH B 40 314 90 HOH TIP . N 3 HOH B 41 315 93 HOH TIP . N 3 HOH B 42 316 96 HOH TIP . N 3 HOH B 43 317 98 HOH TIP . N 3 HOH B 44 319 101 HOH TIP . N 3 HOH B 45 320 102 HOH TIP . N 3 HOH B 46 321 104 HOH TIP . N 3 HOH B 47 322 105 HOH TIP . N 3 HOH B 48 323 106 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 37.773 _atom_site.Cartn_y 93.003 _atom_site.Cartn_z 42.301 _atom_site.occupancy 0.38 _atom_site.B_iso_or_equiv 63.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 273 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #