data_3OTF # _model_server_result.job_id gNU7OBpI76EdK25LGdvRiA _model_server_result.datetime_utc '2024-11-22 02:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3otf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":725}' # _entry.id 3OTF # _exptl.entry_id 3OTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OTF _cell.length_a 69.264 _cell.length_b 69.264 _cell.length_c 191.616 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3OTF _atom_sites.fract_transf_matrix[1][1] 0.014438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 725 686 CMP CMP . C 3 HOH A 1 801 801 HOH HOH . C 3 HOH A 2 802 802 HOH HOH . C 3 HOH A 3 803 803 HOH HOH . C 3 HOH A 4 804 804 HOH HOH . C 3 HOH A 5 805 805 HOH HOH . C 3 HOH A 6 806 806 HOH HOH . C 3 HOH A 7 807 807 HOH HOH . C 3 HOH A 8 808 808 HOH HOH . C 3 HOH A 9 809 809 HOH HOH . C 3 HOH A 10 810 810 HOH HOH . C 3 HOH A 11 811 811 HOH HOH . C 3 HOH A 12 812 812 HOH HOH . C 3 HOH A 13 813 813 HOH HOH . C 3 HOH A 14 814 814 HOH HOH . C 3 HOH A 15 815 815 HOH HOH . C 3 HOH A 16 816 816 HOH HOH . C 3 HOH A 17 817 817 HOH HOH . C 3 HOH A 18 818 818 HOH HOH . C 3 HOH A 19 819 819 HOH HOH . C 3 HOH A 20 820 820 HOH HOH . C 3 HOH A 21 821 821 HOH HOH . C 3 HOH A 22 822 822 HOH HOH . C 3 HOH A 23 823 823 HOH HOH . C 3 HOH A 24 824 824 HOH HOH . C 3 HOH A 25 825 825 HOH HOH . C 3 HOH A 26 826 826 HOH HOH . C 3 HOH A 27 827 827 HOH HOH . C 3 HOH A 28 828 828 HOH HOH . C 3 HOH A 29 829 829 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . B 2 -20.021 -17.183 13.429 1 76.88 ? P CMP 725 A 1 HETATM 2 O O1P CMP . . . B 2 -20.803 -16.969 12.158 1 81.29 ? O1P CMP 725 A 1 HETATM 3 O O2P CMP . . . B 2 -18.712 -16.434 13.381 1 75.9 ? O2P CMP 725 A 1 HETATM 4 O O5' CMP . . . B 2 -20.974 -16.766 14.638 1 76.25 ? O5' CMP 725 A 1 HETATM 5 C C5' CMP . . . B 2 -22.128 -17.555 14.915 1 77.4 ? C5' CMP 725 A 1 HETATM 6 C C4' CMP . . . B 2 -21.584 -18.957 15.104 1 78.03 ? C4' CMP 725 A 1 HETATM 7 O O4' CMP . . . B 2 -22.529 -19.961 15.414 1 78.34 ? O4' CMP 725 A 1 HETATM 8 C C3' CMP . . . B 2 -20.965 -19.484 13.844 1 76.5 ? C3' CMP 725 A 1 HETATM 9 O O3' CMP . . . B 2 -19.782 -18.742 13.662 1 77.5 ? O3' CMP 725 A 1 HETATM 10 C C2' CMP . . . B 2 -20.775 -20.958 14.153 1 76.89 ? C2' CMP 725 A 1 HETATM 11 O O2' CMP . . . B 2 -19.542 -21.242 14.831 1 71.57 ? O2' CMP 725 A 1 HETATM 12 C C1' CMP . . . B 2 -21.938 -21.223 15.089 1 78.95 ? C1' CMP 725 A 1 HETATM 13 N N9 CMP . . . B 2 -22.935 -21.952 14.301 1 82.46 ? N9 CMP 725 A 1 HETATM 14 C C8 CMP . . . B 2 -23.624 -21.46 13.253 1 84.06 ? C8 CMP 725 A 1 HETATM 15 N N7 CMP . . . B 2 -24.466 -22.403 12.76 1 85.16 ? N7 CMP 725 A 1 HETATM 16 C C5 CMP . . . B 2 -24.318 -23.517 13.509 1 85.51 ? C5 CMP 725 A 1 HETATM 17 C C6 CMP . . . B 2 -24.889 -24.886 13.541 1 85.71 ? C6 CMP 725 A 1 HETATM 18 N N6 CMP . . . B 2 -25.833 -25.271 12.652 1 87.25 ? N6 CMP 725 A 1 HETATM 19 N N1 CMP . . . B 2 -24.466 -25.738 14.501 1 85.26 ? N1 CMP 725 A 1 HETATM 20 C C2 CMP . . . B 2 -23.54 -25.37 15.402 1 84.83 ? C2 CMP 725 A 1 HETATM 21 N N3 CMP . . . B 2 -22.974 -24.152 15.427 1 84.41 ? N3 CMP 725 A 1 HETATM 22 C C4 CMP . . . B 2 -23.31 -23.205 14.526 1 84.13 ? C4 CMP 725 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #