data_3OU2 # _model_server_result.job_id OaXqZB186AO-u2Vkimr-yA _model_server_result.datetime_utc '2025-01-02 22:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ou2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3OU2 # _exptl.entry_id 3OU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OU2 _cell.length_a 75.519 _cell.length_b 75.519 _cell.length_c 70.657 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3OU2 _atom_sites.fract_transf_matrix[1][1] 0.013242 _atom_sites.fract_transf_matrix[1][2] 0.007645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 219 219 HOH HOH . C 3 HOH A 2 220 1 HOH HOH . C 3 HOH A 3 221 221 HOH HOH . C 3 HOH A 4 222 222 HOH HOH . C 3 HOH A 5 223 2 HOH HOH . C 3 HOH A 6 224 3 HOH HOH . C 3 HOH A 7 225 225 HOH HOH . C 3 HOH A 8 226 4 HOH HOH . C 3 HOH A 9 227 227 HOH HOH . C 3 HOH A 10 228 228 HOH HOH . C 3 HOH A 11 229 229 HOH HOH . C 3 HOH A 12 230 230 HOH HOH . C 3 HOH A 13 231 5 HOH HOH . C 3 HOH A 14 232 6 HOH HOH . C 3 HOH A 15 233 7 HOH HOH . C 3 HOH A 16 234 8 HOH HOH . C 3 HOH A 17 235 9 HOH HOH . C 3 HOH A 18 236 10 HOH HOH . C 3 HOH A 19 237 11 HOH HOH . C 3 HOH A 20 238 12 HOH HOH . C 3 HOH A 21 239 13 HOH HOH . C 3 HOH A 22 240 14 HOH HOH . C 3 HOH A 23 241 15 HOH HOH . C 3 HOH A 24 242 16 HOH HOH . C 3 HOH A 25 243 17 HOH HOH . C 3 HOH A 26 244 18 HOH HOH . C 3 HOH A 27 245 20 HOH HOH . C 3 HOH A 28 246 21 HOH HOH . C 3 HOH A 29 247 22 HOH HOH . C 3 HOH A 30 248 23 HOH HOH . C 3 HOH A 31 249 24 HOH HOH . C 3 HOH A 32 250 25 HOH HOH . C 3 HOH A 33 251 26 HOH HOH . C 3 HOH A 34 252 28 HOH HOH . C 3 HOH A 35 253 29 HOH HOH . C 3 HOH A 36 254 30 HOH HOH . C 3 HOH A 37 255 31 HOH HOH . C 3 HOH A 38 256 32 HOH HOH . C 3 HOH A 39 257 33 HOH HOH . C 3 HOH A 40 258 34 HOH HOH . C 3 HOH A 41 259 35 HOH HOH . C 3 HOH A 42 260 36 HOH HOH . C 3 HOH A 43 261 37 HOH HOH . C 3 HOH A 44 262 38 HOH HOH . C 3 HOH A 45 263 39 HOH HOH . C 3 HOH A 46 264 40 HOH HOH . C 3 HOH A 47 265 41 HOH HOH . C 3 HOH A 48 266 42 HOH HOH . C 3 HOH A 49 267 43 HOH HOH . C 3 HOH A 50 268 44 HOH HOH . C 3 HOH A 51 269 45 HOH HOH . C 3 HOH A 52 270 46 HOH HOH . C 3 HOH A 53 271 47 HOH HOH . C 3 HOH A 54 272 48 HOH HOH . C 3 HOH A 55 273 49 HOH HOH . C 3 HOH A 56 274 51 HOH HOH . C 3 HOH A 57 275 52 HOH HOH . C 3 HOH A 58 276 53 HOH HOH . C 3 HOH A 59 277 54 HOH HOH . C 3 HOH A 60 278 55 HOH HOH . C 3 HOH A 61 279 56 HOH HOH . C 3 HOH A 62 280 57 HOH HOH . C 3 HOH A 63 281 58 HOH HOH . C 3 HOH A 64 282 59 HOH HOH . C 3 HOH A 65 283 60 HOH HOH . C 3 HOH A 66 284 61 HOH HOH . C 3 HOH A 67 285 62 HOH HOH . C 3 HOH A 68 286 63 HOH HOH . C 3 HOH A 69 287 64 HOH HOH . C 3 HOH A 70 288 65 HOH HOH . C 3 HOH A 71 289 66 HOH HOH . C 3 HOH A 72 290 67 HOH HOH . C 3 HOH A 73 291 68 HOH HOH . C 3 HOH A 74 292 69 HOH HOH . C 3 HOH A 75 293 70 HOH HOH . C 3 HOH A 76 294 72 HOH HOH . C 3 HOH A 77 295 73 HOH HOH . C 3 HOH A 78 296 74 HOH HOH . C 3 HOH A 79 297 75 HOH HOH . C 3 HOH A 80 298 76 HOH HOH . C 3 HOH A 81 299 77 HOH HOH . C 3 HOH A 82 301 78 HOH HOH . C 3 HOH A 83 302 79 HOH HOH . C 3 HOH A 84 303 80 HOH HOH . C 3 HOH A 85 304 81 HOH HOH . C 3 HOH A 86 305 82 HOH HOH . C 3 HOH A 87 306 83 HOH HOH . C 3 HOH A 88 307 84 HOH HOH . C 3 HOH A 89 308 85 HOH HOH . C 3 HOH A 90 309 86 HOH HOH . C 3 HOH A 91 310 87 HOH HOH . C 3 HOH A 92 311 88 HOH HOH . C 3 HOH A 93 312 89 HOH HOH . C 3 HOH A 94 313 90 HOH HOH . C 3 HOH A 95 314 91 HOH HOH . C 3 HOH A 96 315 92 HOH HOH . C 3 HOH A 97 316 93 HOH HOH . C 3 HOH A 98 317 94 HOH HOH . C 3 HOH A 99 318 95 HOH HOH . C 3 HOH A 100 319 96 HOH HOH . C 3 HOH A 101 320 97 HOH HOH . C 3 HOH A 102 321 98 HOH HOH . C 3 HOH A 103 322 100 HOH HOH . C 3 HOH A 104 323 101 HOH HOH . C 3 HOH A 105 324 102 HOH HOH . C 3 HOH A 106 325 103 HOH HOH . C 3 HOH A 107 326 105 HOH HOH . C 3 HOH A 108 327 106 HOH HOH . C 3 HOH A 109 328 107 HOH HOH . C 3 HOH A 110 329 108 HOH HOH . C 3 HOH A 111 330 109 HOH HOH . C 3 HOH A 112 331 110 HOH HOH . C 3 HOH A 113 332 111 HOH HOH . C 3 HOH A 114 333 112 HOH HOH . C 3 HOH A 115 334 113 HOH HOH . C 3 HOH A 116 335 114 HOH HOH . C 3 HOH A 117 336 115 HOH HOH . C 3 HOH A 118 337 116 HOH HOH . C 3 HOH A 119 338 117 HOH HOH . C 3 HOH A 120 339 118 HOH HOH . C 3 HOH A 121 340 119 HOH HOH . C 3 HOH A 122 341 120 HOH HOH . C 3 HOH A 123 342 121 HOH HOH . C 3 HOH A 124 343 122 HOH HOH . C 3 HOH A 125 344 123 HOH HOH . C 3 HOH A 126 345 124 HOH HOH . C 3 HOH A 127 346 125 HOH HOH . C 3 HOH A 128 347 126 HOH HOH . C 3 HOH A 129 348 127 HOH HOH . C 3 HOH A 130 349 130 HOH HOH . C 3 HOH A 131 350 131 HOH HOH . C 3 HOH A 132 351 132 HOH HOH . C 3 HOH A 133 352 133 HOH HOH . C 3 HOH A 134 353 134 HOH HOH . C 3 HOH A 135 354 135 HOH HOH . C 3 HOH A 136 355 136 HOH HOH . C 3 HOH A 137 356 137 HOH HOH . C 3 HOH A 138 357 138 HOH HOH . C 3 HOH A 139 358 139 HOH HOH . C 3 HOH A 140 359 140 HOH HOH . C 3 HOH A 141 360 141 HOH HOH . C 3 HOH A 142 361 142 HOH HOH . C 3 HOH A 143 362 143 HOH HOH . C 3 HOH A 144 363 144 HOH HOH . C 3 HOH A 145 364 145 HOH HOH . C 3 HOH A 146 365 146 HOH HOH . C 3 HOH A 147 366 148 HOH HOH . C 3 HOH A 148 367 149 HOH HOH . C 3 HOH A 149 368 150 HOH HOH . C 3 HOH A 150 369 153 HOH HOH . C 3 HOH A 151 370 154 HOH HOH . C 3 HOH A 152 371 155 HOH HOH . C 3 HOH A 153 372 156 HOH HOH . C 3 HOH A 154 373 158 HOH HOH . C 3 HOH A 155 374 160 HOH HOH . C 3 HOH A 156 375 161 HOH HOH . C 3 HOH A 157 376 162 HOH HOH . C 3 HOH A 158 377 163 HOH HOH . C 3 HOH A 159 378 164 HOH HOH . C 3 HOH A 160 379 165 HOH HOH . C 3 HOH A 161 380 166 HOH HOH . C 3 HOH A 162 381 167 HOH HOH . C 3 HOH A 163 382 168 HOH HOH . C 3 HOH A 164 383 169 HOH HOH . C 3 HOH A 165 384 171 HOH HOH . C 3 HOH A 166 385 172 HOH HOH . C 3 HOH A 167 386 173 HOH HOH . C 3 HOH A 168 387 176 HOH HOH . C 3 HOH A 169 388 177 HOH HOH . C 3 HOH A 170 389 178 HOH HOH . C 3 HOH A 171 390 179 HOH HOH . C 3 HOH A 172 391 181 HOH HOH . C 3 HOH A 173 392 182 HOH HOH . C 3 HOH A 174 393 183 HOH HOH . C 3 HOH A 175 394 184 HOH HOH . C 3 HOH A 176 395 185 HOH HOH . C 3 HOH A 177 396 186 HOH HOH . C 3 HOH A 178 397 187 HOH HOH . C 3 HOH A 179 398 188 HOH HOH . C 3 HOH A 180 399 189 HOH HOH . C 3 HOH A 181 400 190 HOH HOH . C 3 HOH A 182 401 191 HOH HOH . C 3 HOH A 183 402 195 HOH HOH . C 3 HOH A 184 403 196 HOH HOH . C 3 HOH A 185 404 198 HOH HOH . C 3 HOH A 186 405 199 HOH HOH . C 3 HOH A 187 406 200 HOH HOH . C 3 HOH A 188 407 202 HOH HOH . C 3 HOH A 189 408 204 HOH HOH . C 3 HOH A 190 409 205 HOH HOH . C 3 HOH A 191 410 206 HOH HOH . C 3 HOH A 192 411 207 HOH HOH . C 3 HOH A 193 412 210 HOH HOH . C 3 HOH A 194 413 212 HOH HOH . C 3 HOH A 195 414 214 HOH HOH . C 3 HOH A 196 415 215 HOH HOH . C 3 HOH A 197 416 216 HOH HOH . C 3 HOH A 198 417 217 HOH HOH . C 3 HOH A 199 418 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 52.867 33.313 -11.206 1 16.42 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 52.032 32.263 -11.779 1 16.45 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 51.098 31.651 -10.722 1 16.42 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 50.121 32.641 -10.067 1 15.58 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 48.808 31.788 -9.228 1 16.87 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 51.252 32.798 -12.95 1 16.89 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 50.745 31.967 -13.731 1 17.14 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 51.138 34.037 -13.099 1 16.4 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 49.295 31.875 -7.525 1 15.04 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 50.546 31.069 -7.169 1 14.92 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 50.911 31.396 -5.826 1 14.72 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 50.285 29.563 -7.193 1 15.02 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 51.276 28.879 -7.974 1 15.63 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 50.35 29.161 -5.728 1 15.17 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 50.836 27.84 -5.5 1 16.24 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 51.286 30.191 -5.142 1 15.22 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 51.099 30.406 -3.694 1 14.57 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 49.955 30.614 -3.031 1 14.44 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 50.229 30.796 -1.72 1 14.95 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 51.567 30.711 -1.568 1 15.47 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 52.425 30.807 -0.475 1 15.99 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 51.961 31.049 0.77 1 16.78 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 53.749 30.67 -0.689 1 16.56 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 54.23 30.426 -1.913 1 15.41 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 53.436 30.324 -2.987 1 16.06 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 52.103 30.464 -2.82 1 15.13 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #