data_3OUE # _model_server_result.job_id llWg7ONTvBwMYn1kQIhpWQ _model_server_result.datetime_utc '2024-11-29 12:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":612}' # _entry.id 3OUE # _exptl.entry_id 3OUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OUE _cell.length_a 40.8 _cell.length_b 66.4 _cell.length_c 94.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 190 1_555 D CAB HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale2 A SG CYS 33 A CYS 193 1_555 D CAC HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? covale ? covale3 A SG CYS 58 A CYS 218 1_555 E CAB HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale4 A SG CYS 61 A CYS 221 1_555 E CAC HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale5 A SG CYS 74 A CYS 234 1_555 F CAB HEC . A HEC 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale6 A SG CYS 77 A CYS 237 1_555 F CAC HEC . A HEC 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale7 A SG CYS 108 A CYS 268 1_555 G CAB HEC . A HEC 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale8 A SG CYS 111 A CYS 271 1_555 G CAC HEC . A HEC 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? covale ? covale9 A SG CYS 136 A CYS 296 1_555 H CAB HEC . A HEC 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale10 A SG CYS 139 A CYS 299 1_555 H CAC HEC . A HEC 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale11 A SG CYS 152 A CYS 312 1_555 I CAB HEC . A HEC 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale12 A SG CYS 155 A CYS 315 1_555 I CAC HEC . A HEC 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? metalc ? metalc1 A NE2 HIS 21 A HIS 181 1_555 D FE HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc2 A NE2 HIS 24 A HIS 184 1_555 E FE HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 A NE2 HIS 34 A HIS 194 1_555 D FE HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 A SD MET 49 A MET 209 1_555 F FE HEC . A HEC 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 A NE2 HIS 62 A HIS 222 1_555 E FE HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 A NE2 HIS 78 A HIS 238 1_555 F FE HEC . A HEC 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 A NE2 HIS 99 A HIS 259 1_555 G FE HEC . A HEC 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc8 A NE2 HIS 102 A HIS 262 1_555 H FE HEC . A HEC 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc9 A NE2 HIS 112 A HIS 272 1_555 G FE HEC . A HEC 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc10 A SD MET 127 A MET 287 1_555 I FE HEC . A HEC 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc11 A NE2 HIS 140 A HIS 300 1_555 H FE HEC . A HEC 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc12 A NE2 HIS 156 A HIS 316 1_555 I FE HEC . A HEC 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 110 n n FE NB HEC sing 111 n n FE NC HEC sing 112 n n FE ND HEC sing 113 n n CHA C1A HEC doub 114 n n CHA C4D HEC sing 115 n n CHA HHA HEC sing 116 n n CHB C4A HEC doub 117 n n CHB C1B HEC sing 118 n n CHB HHB HEC sing 119 n n CHC C4B HEC doub 120 n n CHC C1C HEC sing 121 n n CHC HHC HEC sing 122 n n CHD C4C HEC doub 123 n n CHD C1D HEC sing 124 n n CHD HHD HEC sing 125 n n NA C1A HEC sing 126 n y NA C4A HEC sing 127 n y C1A C2A HEC sing 128 n y C2A C3A HEC doub 129 n y C2A CAA HEC sing 130 n n C3A C4A HEC sing 131 n y C3A CMA HEC sing 132 n n CMA HMA1 HEC sing 133 n n CMA HMA2 HEC sing 134 n n CMA HMA3 HEC sing 135 n n CAA CBA HEC sing 136 n n CAA HAA1 HEC sing 137 n n CAA HAA2 HEC sing 138 n n CBA CGA HEC sing 139 n n CBA HBA1 HEC sing 140 n n CBA HBA2 HEC sing 141 n n CGA O1A HEC doub 142 n n CGA O2A HEC sing 143 n n O2A H2A HEC sing 144 n n NB C1B HEC sing 145 n y NB C4B HEC sing 146 n y C1B C2B HEC doub 147 n y C2B C3B HEC sing 148 n y C2B CMB HEC sing 149 n n C3B C4B HEC sing 150 n y C3B CAB HEC doub 151 e n CMB HMB1 HEC sing 152 n n CMB HMB2 HEC sing 153 n n CMB HMB3 HEC sing 154 n n CAB CBB HEC sing 155 n n CAB HAB HEC sing 156 n n CBB HBB1 HEC sing 157 n n CBB HBB2 HEC sing 158 n n CBB HBB3 HEC sing 159 n n NC C1C HEC sing 160 n y NC C4C HEC sing 161 n y C1C C2C HEC doub 162 n y C2C C3C HEC sing 163 n y C2C CMC HEC sing 164 n n C3C C4C HEC sing 165 n y C3C CAC HEC doub 166 e n CMC HMC1 HEC sing 167 n n CMC HMC2 HEC sing 168 n n CMC HMC3 HEC sing 169 n n CAC CBC HEC sing 170 n n CAC HAC HEC sing 171 n n CBC HBC1 HEC sing 172 n n CBC HBC2 HEC sing 173 n n CBC HBC3 HEC sing 174 n n ND C1D HEC sing 175 n y ND C4D HEC sing 176 n y C1D C2D HEC doub 177 n y C2D C3D HEC sing 178 n y C2D CMD HEC sing 179 n n C3D C4D HEC doub 180 n y C3D CAD HEC sing 181 n n CMD HMD1 HEC sing 182 n n CMD HMD2 HEC sing 183 n n CMD HMD3 HEC sing 184 n n CAD CBD HEC sing 185 n n CAD HAD1 HEC sing 186 n n CAD HAD2 HEC sing 187 n n CBD CGD HEC sing 188 n n CBD HBD1 HEC sing 189 n n CBD HBD2 HEC sing 190 n n CGD O1D HEC doub 191 n n CGD O2D HEC sing 192 n n O2D H2D HEC sing 193 n n # _atom_sites.entry_id 3OUE _atom_sites.fract_transf_matrix[1][1] 0.02451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 2 SO4 A 1 501 501 SO4 SO4 . D 3 HEC A 1 607 607 HEC HEM . E 3 HEC A 1 608 608 HEC HEM . F 3 HEC A 1 609 609 HEC HEM . G 3 HEC A 1 610 610 HEC HEM . H 3 HEC A 1 611 611 HEC HEM . I 3 HEC A 1 612 612 HEC HEM . J 4 HOH A 1 401 401 HOH HOH . J 4 HOH A 2 402 402 HOH HOH . J 4 HOH A 3 404 404 HOH HOH . J 4 HOH A 4 405 405 HOH HOH . J 4 HOH A 5 406 406 HOH HOH . J 4 HOH A 6 407 407 HOH HOH . J 4 HOH A 7 408 408 HOH HOH . J 4 HOH A 8 409 409 HOH HOH . J 4 HOH A 9 410 410 HOH HOH . J 4 HOH A 10 411 411 HOH HOH . J 4 HOH A 11 412 412 HOH HOH . J 4 HOH A 12 413 413 HOH HOH . J 4 HOH A 13 414 414 HOH HOH . J 4 HOH A 14 415 415 HOH HOH . J 4 HOH A 15 416 416 HOH HOH . J 4 HOH A 16 417 417 HOH HOH . J 4 HOH A 17 418 418 HOH HOH . J 4 HOH A 18 419 419 HOH HOH . J 4 HOH A 19 420 420 HOH HOH . J 4 HOH A 20 422 422 HOH HOH . J 4 HOH A 21 423 423 HOH HOH . J 4 HOH A 22 424 424 HOH HOH . J 4 HOH A 23 426 426 HOH HOH . J 4 HOH A 24 427 427 HOH HOH . J 4 HOH A 25 428 428 HOH HOH . J 4 HOH A 26 429 429 HOH HOH . J 4 HOH A 27 430 430 HOH HOH . J 4 HOH A 28 431 431 HOH HOH . J 4 HOH A 29 432 432 HOH HOH . J 4 HOH A 30 433 433 HOH HOH . J 4 HOH A 31 434 434 HOH HOH . J 4 HOH A 32 436 436 HOH HOH . J 4 HOH A 33 437 437 HOH HOH . J 4 HOH A 34 438 438 HOH HOH . J 4 HOH A 35 440 440 HOH HOH . J 4 HOH A 36 441 441 HOH HOH . J 4 HOH A 37 442 442 HOH HOH . J 4 HOH A 38 443 443 HOH HOH . J 4 HOH A 39 444 444 HOH HOH . J 4 HOH A 40 445 445 HOH HOH . J 4 HOH A 41 446 446 HOH HOH . J 4 HOH A 42 447 447 HOH HOH . J 4 HOH A 43 448 448 HOH HOH . J 4 HOH A 44 449 449 HOH HOH . J 4 HOH A 45 450 450 HOH HOH . J 4 HOH A 46 451 451 HOH HOH . J 4 HOH A 47 452 452 HOH HOH . J 4 HOH A 48 453 453 HOH HOH . J 4 HOH A 49 454 454 HOH HOH . J 4 HOH A 50 455 455 HOH HOH . J 4 HOH A 51 456 456 HOH HOH . J 4 HOH A 52 457 457 HOH HOH . J 4 HOH A 53 458 458 HOH HOH . J 4 HOH A 54 459 459 HOH HOH . J 4 HOH A 55 460 460 HOH HOH . J 4 HOH A 56 462 462 HOH HOH . J 4 HOH A 57 463 463 HOH HOH . J 4 HOH A 58 464 464 HOH HOH . J 4 HOH A 59 465 465 HOH HOH . J 4 HOH A 60 466 466 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . I 3 28.124 18.596 32.954 1 32.34 ? FE HEC 612 A 1 HETATM 2 C CHA HEC . . . I 3 28.428 20.052 29.893 1 34.67 ? CHA HEC 612 A 1 HETATM 3 C CHB HEC . . . I 3 30.649 20.588 34.126 1 32.09 ? CHB HEC 612 A 1 HETATM 4 C CHC HEC . . . I 3 27.583 17.348 36.084 1 33.72 ? CHC HEC 612 A 1 HETATM 5 C CHD HEC . . . I 3 25.933 16.32 31.656 1 34.92 ? CHD HEC 612 A 1 HETATM 6 N NA HEC . . . I 3 29.22 20.052 32.209 1 32.27 ? NA HEC 612 A 1 HETATM 7 C C1A HEC . . . I 3 29.104 20.622 30.957 1 34.26 ? C1A HEC 612 A 1 HETATM 8 C C2A HEC . . . I 3 29.989 21.747 30.784 1 34.49 ? C2A HEC 612 A 1 HETATM 9 C C3A HEC . . . I 3 30.713 21.844 31.927 1 34.82 ? C3A HEC 612 A 1 HETATM 10 C C4A HEC . . . I 3 30.247 20.764 32.813 1 32.29 ? C4A HEC 612 A 1 HETATM 11 C CMA HEC . . . I 3 31.804 22.869 32.22 1 31.28 ? CMA HEC 612 A 1 HETATM 12 C CAA HEC . . . I 3 30.088 22.597 29.506 1 35.84 ? CAA HEC 612 A 1 HETATM 13 C CBA HEC . . . I 3 28.915 23.546 29.393 1 37.24 ? CBA HEC 612 A 1 HETATM 14 C CGA HEC . . . I 3 28.919 24.573 30.492 1 39.78 ? CGA HEC 612 A 1 HETATM 15 O O1A HEC . . . I 3 29.717 25.529 30.392 1 41.38 ? O1A HEC 612 A 1 HETATM 16 O O2A HEC . . . I 3 28.141 24.418 31.464 1 40.52 ? O2A HEC 612 A 1 HETATM 17 N NB HEC . . . I 3 28.875 18.94 34.722 1 33.31 ? NB HEC 612 A 1 HETATM 18 C C1B HEC . . . I 3 29.994 19.738 35.03 1 33.06 ? C1B HEC 612 A 1 HETATM 19 C C2B HEC . . . I 3 30.368 19.585 36.432 1 32.26 ? C2B HEC 612 A 1 HETATM 20 C C3B HEC . . . I 3 29.47 18.738 36.996 1 33.66 ? C3B HEC 612 A 1 HETATM 21 C C4B HEC . . . I 3 28.538 18.34 35.933 1 34.4 ? C4B HEC 612 A 1 HETATM 22 C CMB HEC . . . I 3 31.537 20.256 37.129 1 31.07 ? CMB HEC 612 A 1 HETATM 23 C CAB HEC . . . I 3 29.411 18.319 38.459 1 35.25 ? CAB HEC 612 A 1 HETATM 24 C CBB HEC . . . I 3 29.281 19.479 39.436 1 38.36 ? CBB HEC 612 A 1 HETATM 25 N NC HEC . . . I 3 26.995 17.182 33.72 1 33.06 ? NC HEC 612 A 1 HETATM 26 C C1C HEC . . . I 3 26.889 16.774 35.044 1 33.17 ? C1C HEC 612 A 1 HETATM 27 C C2C HEC . . . I 3 25.964 15.666 35.182 1 33.01 ? C2C HEC 612 A 1 HETATM 28 C C3C HEC . . . I 3 25.485 15.392 33.935 1 33.92 ? C3C HEC 612 A 1 HETATM 29 C C4C HEC . . . I 3 26.114 16.337 33.031 1 33.28 ? C4C HEC 612 A 1 HETATM 30 C CMC HEC . . . I 3 25.64 14.88 36.444 1 34.58 ? CMC HEC 612 A 1 HETATM 31 C CAC HEC . . . I 3 24.584 14.243 33.529 1 31.23 ? CAC HEC 612 A 1 HETATM 32 C CBC HEC . . . I 3 23.252 14.198 34.256 1 32.75 ? CBC HEC 612 A 1 HETATM 33 N ND HEC . . . I 3 27.456 18.197 31.168 1 33.56 ? ND HEC 612 A 1 HETATM 34 C C1D HEC . . . I 3 26.601 17.178 30.777 1 34.74 ? C1D HEC 612 A 1 HETATM 35 C C2D HEC . . . I 3 26.378 17.227 29.343 1 33.83 ? C2D HEC 612 A 1 HETATM 36 C C3D HEC . . . I 3 27.019 18.32 28.853 1 32.59 ? C3D HEC 612 A 1 HETATM 37 C C4D HEC . . . I 3 27.704 18.895 29.979 1 34.79 ? C4D HEC 612 A 1 HETATM 38 C CMD HEC . . . I 3 25.64 16.193 28.512 1 35.39 ? CMD HEC 612 A 1 HETATM 39 C CAD HEC . . . I 3 26.939 18.919 27.446 1 36.45 ? CAD HEC 612 A 1 HETATM 40 C CBD HEC . . . I 3 25.607 19.624 27.25 1 39.32 ? CBD HEC 612 A 1 HETATM 41 C CGD HEC . . . I 3 25.493 20.318 25.91 1 44.39 ? CGD HEC 612 A 1 HETATM 42 O O1D HEC . . . I 3 24.387 20.8 25.586 1 46.83 ? O1D HEC 612 A 1 HETATM 43 O O2D HEC . . . I 3 26.504 20.392 25.18 1 47.95 ? O2D HEC 612 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #