data_3OUI # _model_server_result.job_id LWGSxUvLqtNrPzR3tlc-AA _model_server_result.datetime_utc '2024-11-12 20:27:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3OUI # _exptl.entry_id 3OUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(5,6-dichloro-1H-benzimidazol-2-yl)carbonyl]glycine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OUI _cell.length_a 40.006 _cell.length_b 67.795 _cell.length_c 79.092 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 201 1_555 A SG CYS 29 A CYS 208 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.61 ? metalc ? metalc1 D FE FE2 . A FE2 1 1_555 H O HOH . A HOH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 D FE FE2 . A FE2 1 1_555 A NE2 HIS 134 A HIS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc3 D FE FE2 . A FE2 1 1_555 A OD2 ASP 136 A ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 D FE FE2 . A FE2 1 1_555 A NE2 HIS 195 A HIS 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 D FE FE2 . A FE2 1 1_555 E N15 42Z . A 42Z 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 D FE FE2 . A FE2 1 1_555 E O34 42Z . A 42Z 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C10 H7 Cl2 N3 O3' _chem_comp.formula_weight 288.087 _chem_comp.id 42Z _chem_comp.mon_nstd_flag . _chem_comp.name N-[(5,6-dichloro-1H-benzimidazol-2-yl)carbonyl]glycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 42Z doub 1 n y C1 C6 42Z sing 2 n y C1 H1 42Z sing 3 n n C3 C2 42Z sing 4 n y N15 C2 42Z sing 5 n y N13 C3 42Z sing 6 n y C3 C4 42Z doub 7 n y C6 CL3 42Z sing 8 n n C4 C5 42Z sing 9 n y C4 H4 42Z sing 10 n n C5 CL4 42Z sing 11 n n C5 C6 42Z doub 12 n y N13 C14 42Z sing 13 n y C24 C14 42Z sing 14 n n C14 N15 42Z doub 15 n y N26 C24 42Z sing 16 n n C24 O34 42Z doub 17 n n C43 N26 42Z sing 18 n n N26 HN26 42Z sing 19 n n O32 C28 42Z doub 20 n n O30 C28 42Z sing 21 n n C28 C43 42Z sing 22 n n O30 HO30 42Z sing 23 n n C43 H43 42Z sing 24 n n C43 H43A 42Z sing 25 n n N13 HN13 42Z sing 26 n n # _atom_sites.entry_id 3OUI _atom_sites.fract_transf_matrix[1][1] 0.024996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 901 901 ACT ACT . C 2 ACT A 1 903 903 ACT ACT . D 3 FE2 A 1 1 1 FE2 FE2 . E 4 42Z A 1 393 1 42Z 42Z . F 4 42Z A 1 2 2 42Z 42Z . G 5 PEG A 1 902 902 PEG PEG . H 6 HOH A 1 3 3 HOH HOH . H 6 HOH A 2 4 4 HOH HOH . H 6 HOH A 3 5 5 HOH HOH . H 6 HOH A 4 6 6 HOH HOH . H 6 HOH A 5 8 8 HOH HOH . H 6 HOH A 6 9 9 HOH HOH . H 6 HOH A 7 10 10 HOH HOH . H 6 HOH A 8 11 11 HOH HOH . H 6 HOH A 9 12 12 HOH HOH . H 6 HOH A 10 13 13 HOH HOH . H 6 HOH A 11 15 15 HOH HOH . H 6 HOH A 12 16 16 HOH HOH . H 6 HOH A 13 17 17 HOH HOH . H 6 HOH A 14 19 19 HOH HOH . H 6 HOH A 15 20 20 HOH HOH . H 6 HOH A 16 22 22 HOH HOH . H 6 HOH A 17 23 23 HOH HOH . H 6 HOH A 18 24 24 HOH HOH . H 6 HOH A 19 25 25 HOH HOH . H 6 HOH A 20 26 26 HOH HOH . H 6 HOH A 21 27 27 HOH HOH . H 6 HOH A 22 28 28 HOH HOH . H 6 HOH A 23 29 29 HOH HOH . H 6 HOH A 24 30 30 HOH HOH . H 6 HOH A 25 31 31 HOH HOH . H 6 HOH A 26 32 32 HOH HOH . H 6 HOH A 27 33 33 HOH HOH . H 6 HOH A 28 34 34 HOH HOH . H 6 HOH A 29 35 35 HOH HOH . H 6 HOH A 30 36 36 HOH HOH . H 6 HOH A 31 37 37 HOH HOH . H 6 HOH A 32 38 38 HOH HOH . H 6 HOH A 33 39 39 HOH HOH . H 6 HOH A 34 40 40 HOH HOH . H 6 HOH A 35 41 41 HOH HOH . H 6 HOH A 36 42 42 HOH HOH . H 6 HOH A 37 43 43 HOH HOH . H 6 HOH A 38 44 44 HOH HOH . H 6 HOH A 39 46 46 HOH HOH . H 6 HOH A 40 47 47 HOH HOH . H 6 HOH A 41 48 48 HOH HOH . H 6 HOH A 42 49 49 HOH HOH . H 6 HOH A 43 50 50 HOH HOH . H 6 HOH A 44 51 51 HOH HOH . H 6 HOH A 45 52 52 HOH HOH . H 6 HOH A 46 53 53 HOH HOH . H 6 HOH A 47 54 54 HOH HOH . H 6 HOH A 48 55 55 HOH HOH . H 6 HOH A 49 58 58 HOH HOH . H 6 HOH A 50 60 60 HOH HOH . H 6 HOH A 51 61 61 HOH HOH . H 6 HOH A 52 63 63 HOH HOH . H 6 HOH A 53 65 65 HOH HOH . H 6 HOH A 54 66 66 HOH HOH . H 6 HOH A 55 68 68 HOH HOH . H 6 HOH A 56 71 71 HOH HOH . H 6 HOH A 57 72 72 HOH HOH . H 6 HOH A 58 73 73 HOH HOH . H 6 HOH A 59 74 74 HOH HOH . H 6 HOH A 60 76 76 HOH HOH . H 6 HOH A 61 77 77 HOH HOH . H 6 HOH A 62 78 78 HOH HOH . H 6 HOH A 63 79 79 HOH HOH . H 6 HOH A 64 81 81 HOH HOH . H 6 HOH A 65 82 82 HOH HOH . H 6 HOH A 66 83 83 HOH HOH . H 6 HOH A 67 85 85 HOH HOH . H 6 HOH A 68 86 86 HOH HOH . H 6 HOH A 69 89 89 HOH HOH . H 6 HOH A 70 94 94 HOH HOH . H 6 HOH A 71 95 95 HOH HOH . H 6 HOH A 72 96 96 HOH HOH . H 6 HOH A 73 98 98 HOH HOH . H 6 HOH A 74 99 99 HOH HOH . H 6 HOH A 75 101 101 HOH HOH . H 6 HOH A 76 105 105 HOH HOH . H 6 HOH A 77 107 107 HOH HOH . H 6 HOH A 78 108 108 HOH HOH . H 6 HOH A 79 109 109 HOH HOH . H 6 HOH A 80 110 110 HOH HOH . H 6 HOH A 81 111 111 HOH HOH . H 6 HOH A 82 112 112 HOH HOH . H 6 HOH A 83 113 113 HOH HOH . H 6 HOH A 84 115 115 HOH HOH . H 6 HOH A 85 116 116 HOH HOH . H 6 HOH A 86 118 118 HOH HOH . H 6 HOH A 87 119 119 HOH HOH . H 6 HOH A 88 120 120 HOH HOH . H 6 HOH A 89 121 121 HOH HOH . H 6 HOH A 90 122 122 HOH HOH . H 6 HOH A 91 123 123 HOH HOH . H 6 HOH A 92 124 124 HOH HOH . H 6 HOH A 93 125 125 HOH HOH . H 6 HOH A 94 126 126 HOH HOH . H 6 HOH A 95 128 128 HOH HOH . H 6 HOH A 96 129 129 HOH HOH . H 6 HOH A 97 131 131 HOH HOH . H 6 HOH A 98 132 132 HOH HOH . H 6 HOH A 99 394 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 42Z . . . F 4 25.27 -19.743 -18.852 1 26.52 ? C1 42Z 2 A 1 HETATM 2 C C2 42Z . . . F 4 25.939 -19.291 -19.963 1 25.85 ? C2 42Z 2 A 1 HETATM 3 C C3 42Z . . . F 4 25.3 -18.372 -20.923 1 25.78 ? C3 42Z 2 A 1 HETATM 4 CL CL3 42Z . . . F 4 23.103 -19.915 -17.204 1 25.53 ? CL3 42Z 2 A 1 HETATM 5 C C4 42Z . . . F 4 24.002 -17.94 -20.712 1 23.12 ? C4 42Z 2 A 1 HETATM 6 CL CL4 42Z . . . F 4 21.652 -17.916 -19.257 1 25.05 ? CL4 42Z 2 A 1 HETATM 7 C C5 42Z . . . F 4 23.332 -18.398 -19.59 1 23.97 ? C5 42Z 2 A 1 HETATM 8 C C6 42Z . . . F 4 23.976 -19.319 -18.641 1 22.68 ? C6 42Z 2 A 1 HETATM 9 N N13 42Z . . . F 4 26.219 -18.141 -21.873 1 27.96 ? N13 42Z 2 A 1 HETATM 10 C C14 42Z . . . F 4 27.332 -18.84 -21.563 1 29.39 ? C14 42Z 2 A 1 HETATM 11 N N15 42Z . . . F 4 27.177 -19.541 -20.42 1 28.23 ? N15 42Z 2 A 1 HETATM 12 C C24 42Z . . . F 4 28.588 -18.865 -22.337 1 33.28 ? C24 42Z 2 A 1 HETATM 13 N N26 42Z . . . F 4 28.744 -17.964 -23.311 1 36.27 ? N26 42Z 2 A 1 HETATM 14 C C28 42Z . . . F 4 29.745 -18.419 -25.508 1 41.04 ? C28 42Z 2 A 1 HETATM 15 O O30 42Z . . . F 4 28.737 -19.057 -25.808 1 41.74 ? O30 42Z 2 A 1 HETATM 16 O O32 42Z . . . F 4 30.677 -18.203 -26.443 1 41.79 ? O32 42Z 2 A 1 HETATM 17 O O34 42Z . . . F 4 29.428 -19.714 -22.04 1 32.62 ? O34 42Z 2 A 1 HETATM 18 C C43 42Z . . . F 4 29.951 -17.873 -24.113 1 37.9 ? C43 42Z 2 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 18 #