data_3OUJ
#
_model_server_result.job_id            JxlP0WbMpQuZi1GasYkHwA 
_model_server_result.datetime_utc      '2024-11-23 17:35:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ouj 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":417}' 
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_entry.id    3OUJ 
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_exptl.entry_id    3OUJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OUJ 
_cell.length_a            72.298 
_cell.length_b            72.298 
_cell.length_c            46.496 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3OUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O HOH . A HOH 23 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc2 A NE2 HIS 134 A HIS 313 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc3 A OD1 ASP 136 A ASP 315 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc4 A NE2 HIS 195 A HIS 374 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc5 D O5 AKG . A AKG 417 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 D O1 AKG . A AKG 417 1_555 C FE FE2 . A FE2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     3OUJ 
_atom_sites.fract_transf_matrix[1][1]    0.013832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1 1 SO4 SO4 . 
C 3 FE2 A 1 601 601 FE2 FE2 . 
D 4 AKG A 1 417 601 AKG AKG . 
E 5 HOH A 1 2 2 HOH HOH . 
E 5 HOH A 2 3 3 HOH HOH . 
E 5 HOH A 3 4 4 HOH HOH . 
E 5 HOH A 4 5 5 HOH HOH . 
E 5 HOH A 5 6 6 HOH HOH . 
E 5 HOH A 6 7 7 HOH HOH . 
E 5 HOH A 7 8 8 HOH HOH . 
E 5 HOH A 8 9 9 HOH HOH . 
E 5 HOH A 9 10 10 HOH HOH . 
E 5 HOH A 10 11 11 HOH HOH . 
E 5 HOH A 11 12 12 HOH HOH . 
E 5 HOH A 12 13 13 HOH HOH . 
E 5 HOH A 13 14 14 HOH HOH . 
E 5 HOH A 14 15 15 HOH HOH . 
E 5 HOH A 15 16 16 HOH HOH . 
E 5 HOH A 16 17 17 HOH HOH . 
E 5 HOH A 17 18 18 HOH HOH . 
E 5 HOH A 18 19 19 HOH HOH . 
E 5 HOH A 19 20 20 HOH HOH . 
E 5 HOH A 20 21 21 HOH HOH . 
E 5 HOH A 21 22 22 HOH HOH . 
E 5 HOH A 22 23 23 HOH HOH . 
E 5 HOH A 23 24 24 HOH HOH . 
E 5 HOH A 24 25 25 HOH HOH . 
E 5 HOH A 25 26 26 HOH HOH . 
E 5 HOH A 26 27 27 HOH HOH . 
E 5 HOH A 27 28 28 HOH HOH . 
E 5 HOH A 28 29 29 HOH HOH . 
E 5 HOH A 29 30 30 HOH HOH . 
E 5 HOH A 30 31 31 HOH HOH . 
E 5 HOH A 31 32 32 HOH HOH . 
E 5 HOH A 32 33 33 HOH HOH . 
E 5 HOH A 33 34 34 HOH HOH . 
E 5 HOH A 34 35 35 HOH HOH . 
E 5 HOH A 35 36 36 HOH HOH . 
E 5 HOH A 36 37 37 HOH HOH . 
E 5 HOH A 37 38 38 HOH HOH . 
E 5 HOH A 38 39 39 HOH HOH . 
E 5 HOH A 39 40 40 HOH HOH . 
E 5 HOH A 40 41 41 HOH HOH . 
E 5 HOH A 41 42 42 HOH HOH . 
E 5 HOH A 42 43 43 HOH HOH . 
E 5 HOH A 43 44 44 HOH HOH . 
E 5 HOH A 44 45 45 HOH HOH . 
E 5 HOH A 45 46 46 HOH HOH . 
E 5 HOH A 46 47 47 HOH HOH . 
E 5 HOH A 47 48 48 HOH HOH . 
E 5 HOH A 48 49 49 HOH HOH . 
E 5 HOH A 49 50 50 HOH HOH . 
E 5 HOH A 50 51 51 HOH HOH . 
E 5 HOH A 51 52 52 HOH HOH . 
E 5 HOH A 52 53 53 HOH HOH . 
E 5 HOH A 53 418 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . D 4 14.212 24.798 -5.466 1 36.51 ? C1 AKG 417 A 1 
HETATM 2 O O1 AKG . . . D 4 13.639 24.369 -6.514 1 36.65 ? O1 AKG 417 A 1 
HETATM 3 O O2 AKG . . . D 4 15.09 24.121 -4.887 1 35.45 ? O2 AKG 417 A 1 
HETATM 4 C C2 AKG . . . D 4 13.849 26.112 -4.899 1 36.12 ? C2 AKG 417 A 1 
HETATM 5 O O5 AKG . . . D 4 13.197 26.91 -5.559 1 34.1 ? O5 AKG 417 A 1 
HETATM 6 C C3 AKG . . . D 4 14.263 26.481 -3.484 1 35.95 ? C3 AKG 417 A 1 
HETATM 7 C C4 AKG . . . D 4 13.277 27.5 -2.914 1 34.91 ? C4 AKG 417 A 1 
HETATM 8 C C5 AKG . . . D 4 13.619 27.9 -1.497 1 34.48 ? C5 AKG 417 A 1 
HETATM 9 O O3 AKG . . . D 4 14.411 27.2 -0.828 1 34.1 ? O3 AKG 417 A 1 
HETATM 10 O O4 AKG . . . D 4 13.082 28.931 -1.038 1 32.46 ? O4 AKG 417 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#