data_3OUM
#
_model_server_result.job_id            F6z9QHWZNV3qLZQYgzdwQw 
_model_server_result.datetime_utc      '2024-11-15 05:50:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oum 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":234}' 
#
_entry.id    3OUM 
#
_exptl.entry_id    3OUM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              193.163 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,6-dimethylpyrimido[5,4-e][1,2,4]triazine-5,7(1H,6H)-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OUM 
_cell.length_a            111.008 
_cell.length_b            111.008 
_cell.length_c            57.438 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OUM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 16 A ARG 16 1_555 A N MSE 17 A MSE 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 17 A MSE 17 1_555 A N LEU 18 A LEU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C ASN 23 A ASN 23 1_555 A N MSE 24 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 24 A MSE 24 1_555 A N LEU 25 A LEU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C GLN 202 A GLN 202 1_555 A N MSE 203 A MSE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C MSE 203 A MSE 203 1_555 A N GLU 204 A GLU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A NE2 HIS 60 A HIS 60 1_555 B MN MN . A MN 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc2 A OE1 GLU 113 A GLU 113 1_555 B MN MN . A MN 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 A OE1 GLU 138 A GLU 138 1_555 B MN MN . A MN 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc4 B MN MN . A MN 233 1_555 C O1 TOF . A TOF 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 B MN MN . A MN 233 1_555 D O HOH . A HOH 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
#
_chem_comp.formula           'C7 H7 N5 O2' 
_chem_comp.formula_weight    193.163 
_chem_comp.id                TOF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,6-dimethylpyrimido[5,4-e][1,2,4]triazine-5,7(1H,6H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Toxoflavin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 TOF doub 306 n n 
C1 C2 TOF sing 307 n n 
C1 N10 TOF sing 308 n n 
C2 N3 TOF doub 309 n n 
C2 C7 TOF sing 310 n n 
O2 C9 TOF doub 311 n n 
N3 C4 TOF sing 312 n n 
C4 N5 TOF doub 313 n n 
N5 N6 TOF sing 314 n n 
N6 C7 TOF sing 315 n n 
N6 C11 TOF sing 316 n n 
C7 N8 TOF doub 317 n n 
N8 C9 TOF sing 318 n n 
C9 N10 TOF sing 319 n n 
N10 C12 TOF sing 320 n n 
C4 H4 TOF sing 321 n n 
C11 H11 TOF sing 322 n n 
C11 H11A TOF sing 323 n n 
C11 H11B TOF sing 324 n n 
C12 H12 TOF sing 325 n n 
C12 H12A TOF sing 326 n n 
C12 H12B TOF sing 327 n n 
#
_atom_sites.entry_id                     3OUM 
_atom_sites.fract_transf_matrix[1][1]    0.009008 
_atom_sites.fract_transf_matrix[1][2]    0.005201 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 233 1 MN MN . 
C 3 TOF A 1 234 1 TOF TOX . 
D 4 HOH A 1 235 1 HOH HOH . 
D 4 HOH A 2 236 2 HOH HOH . 
D 4 HOH A 3 237 3 HOH HOH . 
D 4 HOH A 4 238 4 HOH HOH . 
D 4 HOH A 5 239 5 HOH HOH . 
D 4 HOH A 6 240 6 HOH HOH . 
D 4 HOH A 7 241 7 HOH HOH . 
D 4 HOH A 8 242 8 HOH HOH . 
D 4 HOH A 9 243 9 HOH HOH . 
D 4 HOH A 10 244 10 HOH HOH . 
D 4 HOH A 11 245 11 HOH HOH . 
D 4 HOH A 12 246 12 HOH HOH . 
D 4 HOH A 13 247 13 HOH HOH . 
D 4 HOH A 14 248 14 HOH HOH . 
D 4 HOH A 15 249 15 HOH HOH . 
D 4 HOH A 16 250 16 HOH HOH . 
D 4 HOH A 17 251 17 HOH HOH . 
D 4 HOH A 18 252 18 HOH HOH . 
D 4 HOH A 19 253 19 HOH HOH . 
D 4 HOH A 20 254 20 HOH HOH . 
D 4 HOH A 21 255 21 HOH HOH . 
D 4 HOH A 22 256 22 HOH HOH . 
D 4 HOH A 23 257 23 HOH HOH . 
D 4 HOH A 24 258 24 HOH HOH . 
D 4 HOH A 25 259 25 HOH HOH . 
D 4 HOH A 26 260 26 HOH HOH . 
D 4 HOH A 27 261 27 HOH HOH . 
D 4 HOH A 28 262 28 HOH HOH . 
D 4 HOH A 29 263 29 HOH HOH . 
D 4 HOH A 30 264 30 HOH HOH . 
D 4 HOH A 31 265 31 HOH HOH . 
D 4 HOH A 32 266 32 HOH HOH . 
D 4 HOH A 33 267 33 HOH HOH . 
D 4 HOH A 34 268 34 HOH HOH . 
D 4 HOH A 35 269 35 HOH HOH . 
D 4 HOH A 36 270 36 HOH HOH . 
D 4 HOH A 37 271 37 HOH HOH . 
D 4 HOH A 38 272 38 HOH HOH . 
D 4 HOH A 39 273 39 HOH HOH . 
D 4 HOH A 40 274 40 HOH HOH . 
D 4 HOH A 41 275 41 HOH HOH . 
D 4 HOH A 42 276 42 HOH HOH . 
D 4 HOH A 43 277 43 HOH HOH . 
D 4 HOH A 44 278 44 HOH HOH . 
D 4 HOH A 45 279 45 HOH HOH . 
D 4 HOH A 46 280 46 HOH HOH . 
D 4 HOH A 47 281 47 HOH HOH . 
D 4 HOH A 48 282 48 HOH HOH . 
D 4 HOH A 49 283 49 HOH HOH . 
D 4 HOH A 50 284 50 HOH HOH . 
D 4 HOH A 51 285 51 HOH HOH . 
D 4 HOH A 52 286 52 HOH HOH . 
D 4 HOH A 53 287 53 HOH HOH . 
D 4 HOH A 54 288 54 HOH HOH . 
D 4 HOH A 55 289 55 HOH HOH . 
D 4 HOH A 56 290 56 HOH HOH . 
D 4 HOH A 57 291 57 HOH HOH . 
D 4 HOH A 58 292 58 HOH HOH . 
D 4 HOH A 59 293 59 HOH HOH . 
D 4 HOH A 60 294 60 HOH HOH . 
D 4 HOH A 61 295 61 HOH HOH . 
D 4 HOH A 62 296 62 HOH HOH . 
D 4 HOH A 63 297 63 HOH HOH . 
D 4 HOH A 64 298 64 HOH HOH . 
D 4 HOH A 65 299 65 HOH HOH . 
D 4 HOH A 66 300 66 HOH HOH . 
D 4 HOH A 67 301 67 HOH HOH . 
D 4 HOH A 68 302 68 HOH HOH . 
D 4 HOH A 69 303 69 HOH HOH . 
D 4 HOH A 70 304 70 HOH HOH . 
D 4 HOH A 71 305 71 HOH HOH . 
D 4 HOH A 72 306 72 HOH HOH . 
D 4 HOH A 73 307 73 HOH HOH . 
D 4 HOH A 74 308 74 HOH HOH . 
D 4 HOH A 75 309 75 HOH HOH . 
D 4 HOH A 76 310 76 HOH HOH . 
D 4 HOH A 77 311 77 HOH HOH . 
D 4 HOH A 78 312 78 HOH HOH . 
D 4 HOH A 79 313 79 HOH HOH . 
D 4 HOH A 80 314 80 HOH HOH . 
D 4 HOH A 81 315 81 HOH HOH . 
D 4 HOH A 82 316 82 HOH HOH . 
D 4 HOH A 83 317 83 HOH HOH . 
D 4 HOH A 84 318 84 HOH HOH . 
D 4 HOH A 85 319 85 HOH HOH . 
D 4 HOH A 86 320 86 HOH HOH . 
D 4 HOH A 87 321 87 HOH HOH . 
D 4 HOH A 88 322 88 HOH HOH . 
D 4 HOH A 89 323 89 HOH HOH . 
D 4 HOH A 90 324 90 HOH HOH . 
D 4 HOH A 91 325 91 HOH HOH . 
D 4 HOH A 92 326 92 HOH HOH . 
D 4 HOH A 93 327 93 HOH HOH . 
D 4 HOH A 94 328 94 HOH HOH . 
D 4 HOH A 95 329 95 HOH HOH . 
D 4 HOH A 96 330 96 HOH HOH . 
D 4 HOH A 97 331 97 HOH HOH . 
D 4 HOH A 98 332 98 HOH HOH . 
D 4 HOH A 99 333 99 HOH HOH . 
D 4 HOH A 100 334 100 HOH HOH . 
D 4 HOH A 101 335 101 HOH HOH . 
D 4 HOH A 102 336 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TOF . . . C 3 -203.262 126.698 22.409 1 32.83 ? C1 TOF 234 A 1 
HETATM 2 O O1 TOF . . . C 3 -203.516 125.491 22.384 1 28.49 ? O1 TOF 234 A 1 
HETATM 3 C C2 TOF . . . C 3 -204.302 127.722 22.048 1 32.4 ? C2 TOF 234 A 1 
HETATM 4 O O2 TOF . . . C 3 -200.594 129.029 23.155 1 30.66 ? O2 TOF 234 A 1 
HETATM 5 N N3 TOF . . . C 3 -205.504 127.328 21.69 1 33.5 ? N3 TOF 234 A 1 
HETATM 6 C C4 TOF . . . C 3 -206.462 128.31 21.357 1 34.52 ? C4 TOF 234 A 1 
HETATM 7 N N5 TOF . . . C 3 -206.266 129.605 21.37 1 33.33 ? N5 TOF 234 A 1 
HETATM 8 N N6 TOF . . . C 3 -204.98 130.028 21.748 1 34.15 ? N6 TOF 234 A 1 
HETATM 9 C C7 TOF . . . C 3 -203.93 129.171 22.106 1 32.45 ? C7 TOF 234 A 1 
HETATM 10 N N8 TOF . . . C 3 -202.694 129.525 22.479 1 31.75 ? N8 TOF 234 A 1 
HETATM 11 C C9 TOF . . . C 3 -201.705 128.607 22.82 1 32.51 ? C9 TOF 234 A 1 
HETATM 12 N N10 TOF . . . C 3 -201.997 127.214 22.791 1 32.88 ? N10 TOF 234 A 1 
HETATM 13 C C11 TOF . . . C 3 -204.709 131.487 21.78 1 33.14 ? C11 TOF 234 A 1 
HETATM 14 C C12 TOF . . . C 3 -200.938 126.247 23.156 1 32.03 ? C12 TOF 234 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           14 
#