data_3OUQ # _model_server_result.job_id on3ceQUMo6zneQ_-4yIeWg _model_server_result.datetime_utc '2024-12-01 19:20:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ouq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 3OUQ # _exptl.entry_id 3OUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OUQ _cell.length_a 63 _cell.length_b 84.2 _cell.length_c 100.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 63 0 100.9 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 31 A CYS 31 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 A SG CYS 34 A CYS 34 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale3 A SG CYS 58 A CYS 58 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale4 A SG CYS 61 A CYS 61 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale5 A SG CYS 76 A CYS 76 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale6 A SG CYS 79 A CYS 79 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale7 A SG CYS 112 A CYS 112 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale8 A SG CYS 115 A CYS 115 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale9 A SG CYS 138 A CYS 138 1_555 F CAB HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? covale ? covale10 A SG CYS 141 A CYS 141 1_555 F CAC HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale11 A SG CYS 154 A CYS 154 1_555 G CAB HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? covale ? covale12 A SG CYS 157 A CYS 157 1_555 G CAC HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc1 A NE2 HIS 20 A HIS 20 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A NE2 HIS 23 A HIS 23 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A NE2 HIS 35 A HIS 35 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc4 A SD MET 49 A MET 49 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 A NE2 HIS 62 A HIS 62 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc6 A NE2 HIS 80 A HIS 80 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 A NE2 HIS 101 A HIS 101 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc8 A NE2 HIS 104 A HIS 104 1_555 F FE HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc9 A NE2 HIS 116 A HIS 116 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc10 A SD MET 129 A MET 129 1_555 G FE HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc11 A NE2 HIS 142 A HIS 142 1_555 F FE HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 A NE2 HIS 158 A HIS 158 1_555 G FE HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 3OUQ _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEM . F 2 HEC A 1 605 605 HEC HEM . G 2 HEC A 1 606 606 HEC HEM . H 3 HOH A 1 201 201 HOH HOH . H 3 HOH A 2 202 202 HOH HOH . H 3 HOH A 3 203 203 HOH HOH . H 3 HOH A 4 204 204 HOH HOH . H 3 HOH A 5 205 205 HOH HOH . H 3 HOH A 6 206 206 HOH HOH . H 3 HOH A 7 207 207 HOH HOH . H 3 HOH A 8 208 208 HOH HOH . H 3 HOH A 9 209 209 HOH HOH . H 3 HOH A 10 210 210 HOH HOH . H 3 HOH A 11 211 211 HOH HOH . H 3 HOH A 12 212 212 HOH HOH . H 3 HOH A 13 213 213 HOH HOH . H 3 HOH A 14 214 214 HOH HOH . H 3 HOH A 15 215 215 HOH HOH . H 3 HOH A 16 216 216 HOH HOH . H 3 HOH A 17 217 217 HOH HOH . H 3 HOH A 18 218 218 HOH HOH . H 3 HOH A 19 219 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 21.535 35.208 64.506 1 38.96 ? FE HEC 602 A 1 HETATM 2 C CHA HEC . . . C 2 24.579 36.798 64.789 1 35.71 ? CHA HEC 602 A 1 HETATM 3 C CHB HEC . . . C 2 23.113 32.652 62.811 1 33.68 ? CHB HEC 602 A 1 HETATM 4 C CHC HEC . . . C 2 18.561 33.488 64.255 1 32.87 ? CHC HEC 602 A 1 HETATM 5 C CHD HEC . . . C 2 20.028 37.807 66.02 1 35.8 ? CHD HEC 602 A 1 HETATM 6 N NA HEC . . . C 2 23.417 34.825 63.943 1 34.84 ? NA HEC 602 A 1 HETATM 7 C C1A HEC . . . C 2 24.544 35.563 64.195 1 35.59 ? C1A HEC 602 A 1 HETATM 8 C C2A HEC . . . C 2 25.727 34.924 63.697 1 37.31 ? C2A HEC 602 A 1 HETATM 9 C C3A HEC . . . C 2 25.321 33.802 63.105 1 35.29 ? C3A HEC 602 A 1 HETATM 10 C C4A HEC . . . C 2 23.89 33.733 63.236 1 34.22 ? C4A HEC 602 A 1 HETATM 11 C CMA HEC . . . C 2 26.266 32.868 62.38 1 36.6 ? CMA HEC 602 A 1 HETATM 12 C CAA HEC . . . C 2 27.157 35.46 63.726 1 38.42 ? CAA HEC 602 A 1 HETATM 13 C CBA HEC . . . C 2 27.976 34.826 64.823 1 41.63 ? CBA HEC 602 A 1 HETATM 14 C CGA HEC . . . C 2 29.374 35.391 64.892 1 43.46 ? CGA HEC 602 A 1 HETATM 15 O O1A HEC . . . C 2 29.516 36.62 64.768 1 47.45 ? O1A HEC 602 A 1 HETATM 16 O O2A HEC . . . C 2 30.328 34.613 65.081 1 44.99 ? O2A HEC 602 A 1 HETATM 17 N NB HEC . . . C 2 20.948 33.445 63.727 1 35.95 ? NB HEC 602 A 1 HETATM 18 C C1B HEC . . . C 2 21.742 32.503 63.051 1 34.01 ? C1B HEC 602 A 1 HETATM 19 C C2B HEC . . . C 2 20.924 31.394 62.589 1 33.35 ? C2B HEC 602 A 1 HETATM 20 C C3B HEC . . . C 2 19.639 31.618 62.966 1 33.05 ? C3B HEC 602 A 1 HETATM 21 C C4B HEC . . . C 2 19.661 32.897 63.685 1 34.8 ? C4B HEC 602 A 1 HETATM 22 C CMB HEC . . . C 2 21.362 30.194 61.785 1 33.94 ? CMB HEC 602 A 1 HETATM 23 C CAB HEC . . . C 2 18.397 30.777 62.611 1 33.5 ? CAB HEC 602 A 1 HETATM 24 C CBB HEC . . . C 2 18.438 29.259 62.768 1 28.86 ? CBB HEC 602 A 1 HETATM 25 N NC HEC . . . C 2 19.713 35.524 65.08 1 35.87 ? NC HEC 602 A 1 HETATM 26 C C1C HEC . . . C 2 18.602 34.694 64.937 1 35.7 ? C1C HEC 602 A 1 HETATM 27 C C2C HEC . . . C 2 17.412 35.32 65.511 1 35.85 ? C2C HEC 602 A 1 HETATM 28 C C3C HEC . . . C 2 17.813 36.541 65.979 1 36.35 ? C3C HEC 602 A 1 HETATM 29 C C4C HEC . . . C 2 19.241 36.671 65.707 1 36.67 ? C4C HEC 602 A 1 HETATM 30 C CMC HEC . . . C 2 15.995 34.755 65.47 1 32.96 ? CMC HEC 602 A 1 HETATM 31 C CAC HEC . . . C 2 16.936 37.671 66.487 1 37.41 ? CAC HEC 602 A 1 HETATM 32 C CBC HEC . . . C 2 15.875 37.314 67.505 1 38.36 ? CBC HEC 602 A 1 HETATM 33 N ND HEC . . . C 2 22.188 36.946 65.206 1 35.55 ? ND HEC 602 A 1 HETATM 34 C C1D HEC . . . C 2 21.414 37.934 65.769 1 35.39 ? C1D HEC 602 A 1 HETATM 35 C C2D HEC . . . C 2 22.26 39.039 66.195 1 35.6 ? C2D HEC 602 A 1 HETATM 36 C C3D HEC . . . C 2 23.583 38.727 66.001 1 37.9 ? C3D HEC 602 A 1 HETATM 37 C C4D HEC . . . C 2 23.491 37.44 65.296 1 36.68 ? C4D HEC 602 A 1 HETATM 38 C CMD HEC . . . C 2 21.704 40.356 66.702 1 36.04 ? CMD HEC 602 A 1 HETATM 39 C CAD HEC . . . C 2 24.789 39.367 66.723 1 41.87 ? CAD HEC 602 A 1 HETATM 40 C CBD HEC . . . C 2 25.923 40.252 66.144 1 50.22 ? CBD HEC 602 A 1 HETATM 41 C CGD HEC . . . C 2 27.052 39.462 65.447 1 54.31 ? CGD HEC 602 A 1 HETATM 42 O O1D HEC . . . C 2 27.552 38.468 66.028 1 54.45 ? O1D HEC 602 A 1 HETATM 43 O O2D HEC . . . C 2 27.453 39.848 64.323 1 55.41 ? O2D HEC 602 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #