data_3OV1 # _model_server_result.job_id gmB0zf4oXyd9CqrUfdOlLw _model_server_result.datetime_utc '2024-11-04 22:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ov1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":174}' # _entry.id 3OV1 # _exptl.entry_id 3OV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OV1 _cell.length_a 42.131 _cell.length_b 42.131 _cell.length_c 108.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PTR 2 B PTR 2 1_555 B N 1AC 3 B 1AC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 B C 1AC 3 B 1AC 3 1_555 B N ASN 4 B ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C ASN 4 B ASN 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 F NA NA . A NA 8 1_555 A O VAL 58 A VAL 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc2 F NA NA . A NA 8 1_555 G O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 140 n n C1 C2 GOL sing 141 n n C1 H11 GOL sing 142 n n C1 H12 GOL sing 143 n n O1 HO1 GOL sing 144 n n C2 O2 GOL sing 145 n n C2 C3 GOL sing 146 n n C2 H2 GOL sing 147 n n O2 HO2 GOL sing 148 n n C3 O3 GOL sing 149 n n C3 H31 GOL sing 150 n n C3 H32 GOL sing 151 n n O3 HO3 GOL sing 152 n n # _atom_sites.entry_id 3OV1 _atom_sites.fract_transf_matrix[1][1] 0.023735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 174 174 GOL GOL . D 3 GOL A 1 6 6 GOL GOL . E 4 FMT A 1 7 7 FMT FMT . F 5 NA A 1 8 8 NA NA . G 6 HOH A 1 9 9 HOH HOH . G 6 HOH A 2 10 10 HOH HOH . G 6 HOH A 3 11 11 HOH HOH . G 6 HOH A 4 12 12 HOH HOH . G 6 HOH A 5 13 13 HOH HOH . G 6 HOH A 6 14 14 HOH HOH . G 6 HOH A 7 15 15 HOH HOH . G 6 HOH A 8 16 16 HOH HOH . G 6 HOH A 9 17 17 HOH HOH . G 6 HOH A 10 18 18 HOH HOH . G 6 HOH A 11 19 19 HOH HOH . G 6 HOH A 12 20 20 HOH HOH . G 6 HOH A 13 21 21 HOH HOH . G 6 HOH A 14 22 22 HOH HOH . G 6 HOH A 15 24 24 HOH HOH . G 6 HOH A 16 25 25 HOH HOH . G 6 HOH A 17 26 26 HOH HOH . G 6 HOH A 18 27 27 HOH HOH . G 6 HOH A 19 28 28 HOH HOH . G 6 HOH A 20 29 29 HOH HOH . G 6 HOH A 21 30 30 HOH HOH . G 6 HOH A 22 31 31 HOH HOH . G 6 HOH A 23 32 32 HOH HOH . G 6 HOH A 24 33 33 HOH HOH . G 6 HOH A 25 34 34 HOH HOH . G 6 HOH A 26 35 35 HOH HOH . G 6 HOH A 27 36 36 HOH HOH . G 6 HOH A 28 37 37 HOH HOH . G 6 HOH A 29 38 38 HOH HOH . G 6 HOH A 30 39 39 HOH HOH . G 6 HOH A 31 40 40 HOH HOH . G 6 HOH A 32 41 41 HOH HOH . G 6 HOH A 33 43 43 HOH HOH . G 6 HOH A 34 44 44 HOH HOH . G 6 HOH A 35 45 45 HOH HOH . G 6 HOH A 36 46 46 HOH HOH . G 6 HOH A 37 47 47 HOH HOH . G 6 HOH A 38 48 48 HOH HOH . G 6 HOH A 39 49 49 HOH HOH . G 6 HOH A 40 50 50 HOH HOH . G 6 HOH A 41 51 51 HOH HOH . G 6 HOH A 42 52 52 HOH HOH . G 6 HOH A 43 170 53 HOH HOH . G 6 HOH A 44 171 54 HOH HOH . G 6 HOH A 45 177 177 HOH HOH . G 6 HOH A 46 178 178 HOH HOH . G 6 HOH A 47 179 179 HOH HOH . G 6 HOH A 48 180 180 HOH HOH . G 6 HOH A 49 181 181 HOH HOH . G 6 HOH A 50 182 182 HOH HOH . G 6 HOH A 51 183 183 HOH HOH . G 6 HOH A 52 184 184 HOH HOH . G 6 HOH A 53 185 185 HOH HOH . G 6 HOH A 54 186 186 HOH HOH . G 6 HOH A 55 187 187 HOH HOH . G 6 HOH A 56 188 188 HOH HOH . G 6 HOH A 57 189 189 HOH HOH . G 6 HOH A 58 190 190 HOH HOH . G 6 HOH A 59 191 191 HOH HOH . G 6 HOH A 60 192 192 HOH HOH . G 6 HOH A 61 193 193 HOH HOH . G 6 HOH A 62 194 194 HOH HOH . G 6 HOH A 63 196 196 HOH HOH . G 6 HOH A 64 197 197 HOH HOH . G 6 HOH A 65 198 198 HOH HOH . G 6 HOH A 66 199 199 HOH HOH . G 6 HOH A 67 200 200 HOH HOH . G 6 HOH A 68 201 201 HOH HOH . G 6 HOH A 69 202 202 HOH HOH . G 6 HOH A 70 203 203 HOH HOH . G 6 HOH A 71 204 204 HOH HOH . G 6 HOH A 72 205 205 HOH HOH . G 6 HOH A 73 206 206 HOH HOH . G 6 HOH A 74 207 207 HOH HOH . G 6 HOH A 75 208 208 HOH HOH . G 6 HOH A 76 209 209 HOH HOH . G 6 HOH A 77 210 210 HOH HOH . G 6 HOH A 78 211 211 HOH HOH . G 6 HOH A 79 212 212 HOH HOH . G 6 HOH A 80 213 213 HOH HOH . G 6 HOH A 81 214 214 HOH HOH . G 6 HOH A 82 215 215 HOH HOH . G 6 HOH A 83 216 216 HOH HOH . G 6 HOH A 84 217 217 HOH HOH . G 6 HOH A 85 218 218 HOH HOH . G 6 HOH A 86 219 219 HOH HOH . G 6 HOH A 87 220 220 HOH HOH . G 6 HOH A 88 222 222 HOH HOH . G 6 HOH A 89 223 223 HOH HOH . G 6 HOH A 90 224 224 HOH HOH . G 6 HOH A 91 225 225 HOH HOH . G 6 HOH A 92 226 226 HOH HOH . G 6 HOH A 93 227 227 HOH HOH . G 6 HOH A 94 228 228 HOH HOH . G 6 HOH A 95 229 229 HOH HOH . G 6 HOH A 96 230 230 HOH HOH . G 6 HOH A 97 231 231 HOH HOH . G 6 HOH A 98 232 232 HOH HOH . G 6 HOH A 99 233 233 HOH HOH . G 6 HOH A 100 234 234 HOH HOH . G 6 HOH A 101 235 235 HOH HOH . G 6 HOH A 102 236 236 HOH HOH . H 6 HOH B 1 23 23 HOH HOH . H 6 HOH B 2 42 42 HOH HOH . H 6 HOH B 3 175 175 HOH HOH . H 6 HOH B 4 176 176 HOH HOH . H 6 HOH B 5 195 195 HOH HOH . H 6 HOH B 6 221 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -0.532 10.227 1.559 1 21.91 ? C1 GOL 174 A 1 HETATM 2 O O1 GOL . . . C 3 0.122 10.708 2.645 1 40.42 ? O1 GOL 174 A 1 HETATM 3 C C2 GOL . . . C 3 -0.79 11.367 0.592 1 30.85 ? C2 GOL 174 A 1 HETATM 4 O O2 GOL . . . C 3 0.205 12.48 0.533 1 41.02 ? O2 GOL 174 A 1 HETATM 5 C C3 GOL . . . C 3 -0.178 10.458 -0.353 1 35.81 ? C3 GOL 174 A 1 HETATM 6 O O3 GOL . . . C 3 -0.494 11.041 -1.435 1 24.31 ? O3 GOL 174 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #