data_3OV6 # _model_server_result.job_id ImoIPK_ZAF8NotBBBmmWIA _model_server_result.datetime_utc '2024-12-04 09:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ov6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OV6 # _exptl.entry_id 3OV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OV6 _cell.length_a 53.724 _cell.length_b 87.087 _cell.length_c 88.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 219 A CYS 102 1_555 A SG CYS 284 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 324 A CYS 207 1_555 A SG CYS 379 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf3 A SG CYS 28 A CYS 1025 1_555 A SG CYS 83 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 B C1 NAG . A NAG 1 1_555 A ND2 ASN 137 A ASN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 399 n n C1 O1 NAG sing 400 n n C1 O5 NAG sing 401 n n C1 H1 NAG sing 402 n n C2 C3 NAG sing 403 n n C2 N2 NAG sing 404 n n C2 H2 NAG sing 405 n n C3 C4 NAG sing 406 n n C3 O3 NAG sing 407 n n C3 H3 NAG sing 408 n n C4 C5 NAG sing 409 n n C4 O4 NAG sing 410 n n C4 H4 NAG sing 411 n n C5 C6 NAG sing 412 n n C5 O5 NAG sing 413 n n C5 H5 NAG sing 414 n n C6 O6 NAG sing 415 n n C6 H61 NAG sing 416 n n C6 H62 NAG sing 417 n n C7 C8 NAG sing 418 n n C7 N2 NAG sing 419 n n C7 O7 NAG doub 420 n n C8 H81 NAG sing 421 n n C8 H82 NAG sing 422 n n C8 H83 NAG sing 423 n n N2 HN2 NAG sing 424 n n O1 HO1 NAG sing 425 n n O3 HO3 NAG sing 426 n n O4 HO4 NAG sing 427 n n O6 HO6 NAG sing 428 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3OV6 _atom_sites.fract_transf_matrix[1][1] 0.018614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1 1 NAG NAG . C 3 D12 A 1 1104 1 D12 D12 . D 4 MK0 A 1 1105 1 MK0 MK0 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 1106 1 HOH HOH . E 5 HOH A 6 1107 6 HOH HOH . E 5 HOH A 7 1108 7 HOH HOH . E 5 HOH A 8 1109 8 HOH HOH . E 5 HOH A 9 1110 9 HOH HOH . E 5 HOH A 10 1111 10 HOH HOH . E 5 HOH A 11 1112 11 HOH HOH . E 5 HOH A 12 1113 12 HOH HOH . E 5 HOH A 13 1114 13 HOH HOH . E 5 HOH A 14 1115 14 HOH HOH . E 5 HOH A 15 1116 15 HOH HOH . E 5 HOH A 16 1117 16 HOH HOH . E 5 HOH A 17 1118 17 HOH HOH . E 5 HOH A 18 1119 18 HOH HOH . E 5 HOH A 19 1120 19 HOH HOH . E 5 HOH A 20 1121 20 HOH HOH . E 5 HOH A 21 1122 21 HOH HOH . E 5 HOH A 22 1123 22 HOH HOH . E 5 HOH A 23 1124 23 HOH HOH . E 5 HOH A 24 1125 24 HOH HOH . E 5 HOH A 25 1126 25 HOH HOH . E 5 HOH A 26 1127 26 HOH HOH . E 5 HOH A 27 1128 27 HOH HOH . E 5 HOH A 28 1129 28 HOH HOH . E 5 HOH A 29 1130 29 HOH HOH . E 5 HOH A 30 1131 30 HOH HOH . E 5 HOH A 31 1132 31 HOH HOH . E 5 HOH A 32 1133 32 HOH HOH . E 5 HOH A 33 1134 33 HOH HOH . E 5 HOH A 34 1135 34 HOH HOH . E 5 HOH A 35 1136 35 HOH HOH . E 5 HOH A 36 1137 36 HOH HOH . E 5 HOH A 37 1138 37 HOH HOH . E 5 HOH A 38 1139 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -12.527 47.209 -21.818 1 102.25 ? C1 NAG 1 A 1 HETATM 2 C C2 NAG . . . B 2 -12.822 48.674 -22.016 1 107.99 ? C2 NAG 1 A 1 HETATM 3 C C3 NAG . . . B 2 -11.74 49.482 -21.282 1 111.44 ? C3 NAG 1 A 1 HETATM 4 C C4 NAG . . . B 2 -11.747 49.119 -19.793 1 112.49 ? C4 NAG 1 A 1 HETATM 5 C C5 NAG . . . B 2 -11.793 47.58 -19.65 1 112.01 ? C5 NAG 1 A 1 HETATM 6 C C6 NAG . . . B 2 -11.904 47.048 -18.208 1 107.38 ? C6 NAG 1 A 1 HETATM 7 C C7 NAG . . . B 2 -12.292 49.209 -24.473 1 112.9 ? C7 NAG 1 A 1 HETATM 8 C C8 NAG . . . B 2 -13.02 49.396 -25.773 1 101.93 ? C8 NAG 1 A 1 HETATM 9 N N2 NAG . . . B 2 -13.107 48.931 -23.437 1 114.18 ? N2 NAG 1 A 1 HETATM 10 O O3 NAG . . . B 2 -11.9 50.877 -21.447 1 114.25 ? O3 NAG 1 A 1 HETATM 11 O O4 NAG . . . B 2 -10.606 49.685 -19.158 1 111.26 ? O4 NAG 1 A 1 HETATM 12 O O5 NAG . . . B 2 -12.793 46.962 -20.46 1 109.05 ? O5 NAG 1 A 1 HETATM 13 O O6 NAG . . . B 2 -13.048 47.497 -17.502 1 115.38 ? O6 NAG 1 A 1 HETATM 14 O O7 NAG . . . B 2 -11.066 49.326 -24.423 1 108.41 ? O7 NAG 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #