data_3OV6 # _model_server_result.job_id BmgEy5QYMXvCvTcC5gYc-Q _model_server_result.datetime_utc '2024-12-04 09:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ov6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1104}' # _entry.id 3OV6 # _exptl.entry_id 3OV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OV6 _cell.length_a 53.724 _cell.length_b 87.087 _cell.length_c 88.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 219 A CYS 102 1_555 A SG CYS 284 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 324 A CYS 207 1_555 A SG CYS 379 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf3 A SG CYS 28 A CYS 1025 1_555 A SG CYS 83 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 B C1 NAG . A NAG 1 1_555 A ND2 ASN 137 A ASN 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.662 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 83 n n C1 H11 D12 sing 84 n n C1 H12 D12 sing 85 n n C1 H13 D12 sing 86 n n C2 C3 D12 sing 87 n n C2 H21 D12 sing 88 n n C2 H22 D12 sing 89 n n C3 C4 D12 sing 90 n n C3 H31 D12 sing 91 n n C3 H32 D12 sing 92 n n C4 C5 D12 sing 93 n n C4 H41 D12 sing 94 n n C4 H42 D12 sing 95 n n C5 C6 D12 sing 96 n n C5 H51 D12 sing 97 n n C5 H52 D12 sing 98 n n C6 C7 D12 sing 99 n n C6 H61 D12 sing 100 n n C6 H62 D12 sing 101 n n C7 C8 D12 sing 102 n n C7 H71 D12 sing 103 n n C7 H72 D12 sing 104 n n C8 C9 D12 sing 105 n n C8 H81 D12 sing 106 n n C8 H82 D12 sing 107 n n C9 C10 D12 sing 108 n n C9 H91 D12 sing 109 n n C9 H92 D12 sing 110 n n C10 C11 D12 sing 111 n n C10 H101 D12 sing 112 n n C10 H102 D12 sing 113 n n C11 C12 D12 sing 114 n n C11 H111 D12 sing 115 n n C11 H112 D12 sing 116 n n C12 H121 D12 sing 117 n n C12 H122 D12 sing 118 n n C12 H123 D12 sing 119 n n # _atom_sites.entry_id 3OV6 _atom_sites.fract_transf_matrix[1][1] 0.018614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1 1 NAG NAG . C 3 D12 A 1 1104 1 D12 D12 . D 4 MK0 A 1 1105 1 MK0 MK0 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 1106 1 HOH HOH . E 5 HOH A 6 1107 6 HOH HOH . E 5 HOH A 7 1108 7 HOH HOH . E 5 HOH A 8 1109 8 HOH HOH . E 5 HOH A 9 1110 9 HOH HOH . E 5 HOH A 10 1111 10 HOH HOH . E 5 HOH A 11 1112 11 HOH HOH . E 5 HOH A 12 1113 12 HOH HOH . E 5 HOH A 13 1114 13 HOH HOH . E 5 HOH A 14 1115 14 HOH HOH . E 5 HOH A 15 1116 15 HOH HOH . E 5 HOH A 16 1117 16 HOH HOH . E 5 HOH A 17 1118 17 HOH HOH . E 5 HOH A 18 1119 18 HOH HOH . E 5 HOH A 19 1120 19 HOH HOH . E 5 HOH A 20 1121 20 HOH HOH . E 5 HOH A 21 1122 21 HOH HOH . E 5 HOH A 22 1123 22 HOH HOH . E 5 HOH A 23 1124 23 HOH HOH . E 5 HOH A 24 1125 24 HOH HOH . E 5 HOH A 25 1126 25 HOH HOH . E 5 HOH A 26 1127 26 HOH HOH . E 5 HOH A 27 1128 27 HOH HOH . E 5 HOH A 28 1129 28 HOH HOH . E 5 HOH A 29 1130 29 HOH HOH . E 5 HOH A 30 1131 30 HOH HOH . E 5 HOH A 31 1132 31 HOH HOH . E 5 HOH A 32 1133 32 HOH HOH . E 5 HOH A 33 1134 33 HOH HOH . E 5 HOH A 34 1135 34 HOH HOH . E 5 HOH A 35 1136 35 HOH HOH . E 5 HOH A 36 1137 36 HOH HOH . E 5 HOH A 37 1138 37 HOH HOH . E 5 HOH A 38 1139 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . C 3 -16.967 32.333 -32.519 1 66.11 ? C1 D12 1104 A 1 HETATM 2 C C2 D12 . . . C 3 -16.981 31.565 -33.829 1 69.63 ? C2 D12 1104 A 1 HETATM 3 C C3 D12 . . . C 3 -15.836 30.555 -33.905 1 70.05 ? C3 D12 1104 A 1 HETATM 4 C C4 D12 . . . C 3 -16.045 29.562 -35.051 1 72.62 ? C4 D12 1104 A 1 HETATM 5 C C5 D12 . . . C 3 -15.012 28.431 -35.083 1 69.54 ? C5 D12 1104 A 1 HETATM 6 C C6 D12 . . . C 3 -13.897 28.699 -36.097 1 72.94 ? C6 D12 1104 A 1 HETATM 7 C C7 D12 . . . C 3 -12.806 27.622 -36.096 1 70.25 ? C7 D12 1104 A 1 HETATM 8 C C8 D12 . . . C 3 -11.774 27.812 -37.211 1 72.46 ? C8 D12 1104 A 1 HETATM 9 C C9 D12 . . . C 3 -11.146 29.203 -37.135 1 80.97 ? C9 D12 1104 A 1 HETATM 10 C C10 D12 . . . C 3 -10.153 29.512 -38.251 1 84.15 ? C10 D12 1104 A 1 HETATM 11 C C11 D12 . . . C 3 -10.027 31.019 -38.456 1 77.93 ? C11 D12 1104 A 1 HETATM 12 C C12 D12 . . . C 3 -8.966 31.595 -37.551 1 76.39 ? C12 D12 1104 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #