data_3OVJ # _model_server_result.job_id 7LnY6xgx2_6gLOja1ZhNtA _model_server_result.datetime_utc '2025-07-08 04:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ovj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":50}' # _entry.id 3OVJ # _exptl.entry_id 3OVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 62.28 _cell.angle_beta 88.59 _cell.angle_gamma 88.45 _cell.entry_id 3OVJ _cell.length_a 9.536 _cell.length_b 26.008 _cell.length_c 25.803 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C16 H12 N2 O7 S2' _chem_comp.formula_weight 408.406 _chem_comp.id ORA _chem_comp.mon_nstd_flag . _chem_comp.name '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Orange G' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ORA doub 60 n y C1 C3 ORA sing 61 n y C1 H1 ORA sing 62 n n N1 N2 ORA doub 63 n n N1 C12 ORA sing 64 n n O1 S1 ORA sing 65 n n S1 O3 ORA doub 66 n n S1 O4 ORA doub 67 n n S1 C15 ORA sing 68 n n C2 C5 ORA sing 69 n y C2 H2 ORA sing 70 n n N2 C13 ORA sing 71 n n O2 S2 ORA sing 72 n n S2 O5 ORA doub 73 n n S2 O6 ORA doub 74 n n S2 C16 ORA sing 75 n n C3 C6 ORA doub 76 n y C3 H3 ORA sing 77 n n C4 C7 ORA doub 78 n y C4 C10 ORA sing 79 n y C4 H4 ORA sing 80 n n C5 C12 ORA doub 81 n y C5 H5 ORA sing 82 n n C6 C12 ORA sing 83 n y C6 H6 ORA sing 84 n n C7 C14 ORA sing 85 n y C7 H7 ORA sing 86 n n O7 C14 ORA sing 87 n n O7 HO7 ORA sing 88 n n C8 C10 ORA doub 89 n y C8 C15 ORA sing 90 n y C8 H8 ORA sing 91 n n C9 C15 ORA doub 92 n y C9 C16 ORA sing 93 n y C9 H9 ORA sing 94 n n C10 C11 ORA sing 95 n y C11 C13 ORA sing 96 n y C11 C16 ORA doub 97 n y C13 C14 ORA doub 98 n y O1 H11 ORA sing 99 n n O2 H12 ORA sing 100 n n # _atom_sites.entry_id 3OVJ _atom_sites.fract_transf_matrix[1][1] 0.104866 _atom_sites.fract_transf_matrix[1][2] -0.002843 _atom_sites.fract_transf_matrix[1][3] -0.001414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038464 _atom_sites.fract_transf_matrix[2][3] -0.020193 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.043785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ORA B 1 49 49 ORA ORA . F 2 ORA D 1 50 50 ORA ORA . G 3 HOH A 1 7 1 HOH HOH . H 3 HOH B 1 7 7 HOH HOH . H 3 HOH B 2 8 8 HOH HOH . H 3 HOH B 3 9 9 HOH HOH . H 3 HOH B 4 10 3 HOH HOH . H 3 HOH B 5 11 11 HOH HOH . H 3 HOH B 6 12 4 HOH HOH . H 3 HOH B 7 13 5 HOH HOH . H 3 HOH B 8 14 6 HOH HOH . I 3 HOH C 1 10 10 HOH HOH . J 3 HOH D 1 7 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ORA . . . F 2 4.178 0.067 -25.12 1 19.6 ? C1 ORA 50 D 1 HETATM 2 N N1 ORA . . . F 2 0.266 -0.221 -26.521 1 17.92 ? N1 ORA 50 D 1 HETATM 3 O O1 ORA . . . F 2 -4.247 -5.59 -31.253 1 37.19 ? O1 ORA 50 D 1 HETATM 4 S S1 ORA . . . F 2 -4.723 -5.151 -29.927 1 34.45 ? S1 ORA 50 D 1 HETATM 5 C C2 ORA . . . F 2 3.703 -1.139 -25.631 1 16.22 ? C2 ORA 50 D 1 HETATM 6 N N2 ORA . . . F 2 -0.066 -0.583 -27.66 1 20.81 ? N2 ORA 50 D 1 HETATM 7 O O2 ORA . . . F 2 0.783 -2.376 -29.297 1 21.17 ? O2 ORA 50 D 1 HETATM 8 S S2 ORA . . . F 2 -0.086 -3.449 -28.785 1 23.07 ? S2 ORA 50 D 1 HETATM 9 C C3 ORA . . . F 2 3.354 1.183 -25.082 1 15.75 ? C3 ORA 50 D 1 HETATM 10 O O3 ORA . . . F 2 -4.629 -6.286 -28.989 1 37.22 ? O3 ORA 50 D 1 HETATM 11 C C4 ORA . . . F 2 -4.319 -0.507 -28.2 1 16.91 ? C4 ORA 50 D 1 HETATM 12 O O4 ORA . . . F 2 -6.147 -4.746 -30.005 1 39.44 ? O4 ORA 50 D 1 HETATM 13 C C5 ORA . . . F 2 2.405 -1.236 -26.097 1 16.3 ? C5 ORA 50 D 1 HETATM 14 O O5 ORA . . . F 2 0.361 -3.736 -27.417 1 24.59 ? O5 ORA 50 D 1 HETATM 15 C C6 ORA . . . F 2 2.054 1.085 -25.554 1 18.4 ? C6 ORA 50 D 1 HETATM 16 O O6 ORA . . . F 2 0.105 -4.602 -29.676 1 22.54 ? O6 ORA 50 D 1 HETATM 17 C C7 ORA . . . F 2 -3.655 0.595 -27.706 1 20.93 ? C7 ORA 50 D 1 HETATM 18 O O7 ORA . . . F 2 -1.654 1.666 -27.06 1 29.85 ? O7 ORA 50 D 1 HETATM 19 C C8 ORA . . . F 2 -4.424 -2.718 -29.006 1 22.12 ? C8 ORA 50 D 1 HETATM 20 C C9 ORA . . . F 2 -2.471 -4.075 -29.273 1 23.98 ? C9 ORA 50 D 1 HETATM 21 C C10 ORA . . . F 2 -3.638 -1.671 -28.528 1 20.57 ? C10 ORA 50 D 1 HETATM 22 C C11 ORA . . . F 2 -2.242 -1.8 -28.406 1 19.21 ? C11 ORA 50 D 1 HETATM 23 C C12 ORA . . . F 2 1.582 -0.118 -26.071 1 17.67 ? C12 ORA 50 D 1 HETATM 24 C C13 ORA . . . F 2 -1.493 -0.64 -27.883 1 19.08 ? C13 ORA 50 D 1 HETATM 25 C C14 ORA . . . F 2 -2.288 0.559 -27.544 1 21.57 ? C14 ORA 50 D 1 HETATM 26 C C15 ORA . . . F 2 -3.845 -3.925 -29.382 1 29.21 ? C15 ORA 50 D 1 HETATM 27 C C16 ORA . . . F 2 -1.65 -3.048 -28.798 1 22.97 ? C16 ORA 50 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 1417 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #