data_3OVL # _model_server_result.job_id uPIVaMif6r3xXfKDpxBrkg _model_server_result.datetime_utc '2025-02-05 12:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ovl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":79}' # _entry.id 3OVL # _exptl.entry_id 3OVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.406 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.98 _cell.angle_gamma 90 _cell.entry_id 3OVL _cell.length_a 55.056 _cell.length_b 4.831 _cell.length_c 22.127 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 0 4.831 0 3 'crystal symmetry operation' 1_575 x,y+2,z 1 0 0 0 1 0 0 0 1 0 9.662 0 4 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 -27.528 2.4155 0 5 'crystal symmetry operation' 4_465 -x-1/2,y+3/2,-z -1 0 0 0 1 0 0 0 -1 -27.528 7.2465 0 6 'crystal symmetry operation' 4_475 -x-1/2,y+5/2,-z -1 0 0 0 1 0 0 0 -1 -27.528 12.0775 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NZ LYS 6 A LYS 6 1_555 B ZN ZN . A ZN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 A O LYS 6 A LYS 6 1_555 C ZN ZN . A ZN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 B ZN ZN . A ZN 7 1_555 E O4 ORA . A ORA 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 B ZN ZN . A ZN 7 1_555 E S1 ORA . A ORA 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc5 C ZN ZN . A ZN 8 1_555 D OXT ACY . A ACY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? # _chem_comp.formula 'C16 H12 N2 O7 S2' _chem_comp.formula_weight 408.406 _chem_comp.id ORA _chem_comp.mon_nstd_flag . _chem_comp.name '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Orange G' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ORA doub 74 n y C1 C3 ORA sing 75 n y C1 H1 ORA sing 76 n n N1 N2 ORA doub 77 n n N1 C12 ORA sing 78 n n O1 S1 ORA sing 79 n n S1 O3 ORA doub 80 n n S1 O4 ORA doub 81 n n S1 C15 ORA sing 82 n n C2 C5 ORA sing 83 n y C2 H2 ORA sing 84 n n N2 C13 ORA sing 85 n n O2 S2 ORA sing 86 n n S2 O5 ORA doub 87 n n S2 O6 ORA doub 88 n n S2 C16 ORA sing 89 n n C3 C6 ORA doub 90 n y C3 H3 ORA sing 91 n n C4 C7 ORA doub 92 n y C4 C10 ORA sing 93 n y C4 H4 ORA sing 94 n n C5 C12 ORA doub 95 n y C5 H5 ORA sing 96 n n C6 C12 ORA sing 97 n y C6 H6 ORA sing 98 n n C7 C14 ORA sing 99 n y C7 H7 ORA sing 100 n n O7 C14 ORA sing 101 n n O7 HO7 ORA sing 102 n n C8 C10 ORA doub 103 n y C8 C15 ORA sing 104 n y C8 H8 ORA sing 105 n n C9 C15 ORA doub 106 n y C9 C16 ORA sing 107 n y C9 H9 ORA sing 108 n n C10 C11 ORA sing 109 n y C11 C13 ORA sing 110 n y C11 C16 ORA doub 111 n y C13 C14 ORA doub 112 n y O1 H11 ORA sing 113 n n O2 H12 ORA sing 114 n n # _atom_sites.entry_id 3OVL _atom_sites.fract_transf_matrix[1][1] 0.018163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004187 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.206996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.046379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 7 2 ZN ZN . C 2 ZN A 1 8 1 ZN ZN . D 3 ACY A 1 9 1 ACY ACY . E 4 ORA A 1 79 79 ORA ORA . F 5 HOH A 1 10 1 HOH HOH . F 5 HOH A 2 11 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ORA . . . E 4 -2.249 8.785 6.38 0.25 36.92 ? C1 ORA 79 A 1 HETATM 2 N N1 ORA . . . E 4 -1.432 4.79 5.471 0.25 33.27 ? N1 ORA 79 A 1 HETATM 3 O O1 ORA . . . E 4 -5.113 -2.222 7.94 0.25 33.75 ? O1 ORA 79 A 1 HETATM 4 S S1 ORA . . . E 4 -3.936 -1.858 8.761 0.25 32.06 ? S1 ORA 79 A 1 HETATM 5 C C2 ORA . . . E 4 -0.995 8.446 5.839 0.25 36.47 ? C2 ORA 79 A 1 HETATM 6 N N2 ORA . . . E 4 -1.396 3.962 6.443 0.25 32.44 ? N2 ORA 79 A 1 HETATM 7 O O2 ORA . . . E 4 -4.136 3.788 7.203 0.25 30.38 ? O2 ORA 79 A 1 HETATM 8 S S2 ORA . . . E 4 -3.242 3.196 8.224 0.25 30.16 ? S2 ORA 79 A 1 HETATM 9 C C3 ORA . . . E 4 -3.23 7.794 6.616 0.25 36.11 ? C3 ORA 79 A 1 HETATM 10 O O3 ORA . . . E 4 -3.072 -3.052 8.89 0.25 32.62 ? O3 ORA 79 A 1 HETATM 11 C C4 ORA . . . E 4 -0.566 -0.169 5.524 0.25 30.05 ? C4 ORA 79 A 1 HETATM 12 O O4 ORA . . . E 4 -4.369 -1.41 10.094 0.25 29.49 ? O4 ORA 79 A 1 HETATM 13 C C5 ORA . . . E 4 -0.721 7.115 5.536 0.25 35.97 ? C5 ORA 79 A 1 HETATM 14 O O5 ORA . . . E 4 -3.956 3.153 9.52 0.25 25.49 ? O5 ORA 79 A 1 HETATM 15 C C6 ORA . . . E 4 -2.956 6.465 6.311 0.25 35.48 ? C6 ORA 79 A 1 HETATM 16 O O6 ORA . . . E 4 -2.05 4.052 8.395 0.25 29.45 ? O6 ORA 79 A 1 HETATM 17 C C7 ORA . . . E 4 0.137 0.829 4.867 0.25 29.92 ? C7 ORA 79 A 1 HETATM 18 O O7 ORA . . . E 4 0.601 3.12 4.481 0.25 28.58 ? O7 ORA 79 A 1 HETATM 19 C C8 ORA . . . E 4 -2.196 -0.91 7.094 0.25 31.92 ? C8 ORA 79 A 1 HETATM 20 C C9 ORA . . . E 4 -3.479 0.652 8.388 0.25 30.72 ? C9 ORA 79 A 1 HETATM 21 C C10 ORA . . . E 4 -1.531 0.141 6.474 0.25 30.63 ? C10 ORA 79 A 1 HETATM 22 C C11 ORA . . . E 4 -1.836 1.462 6.807 0.25 30.67 ? C11 ORA 79 A 1 HETATM 23 C C12 ORA . . . E 4 -1.703 6.128 5.771 0.25 35.15 ? C12 ORA 79 A 1 HETATM 24 C C13 ORA . . . E 4 -1.128 2.566 6.146 0.25 31.32 ? C13 ORA 79 A 1 HETATM 25 C C14 ORA . . . E 4 -0.11 2.164 5.144 0.25 30.13 ? C14 ORA 79 A 1 HETATM 26 C C15 ORA . . . E 4 -3.167 -0.656 8.052 0.25 31.46 ? C15 ORA 79 A 1 HETATM 27 C C16 ORA . . . E 4 -2.824 1.715 7.773 0.25 30.33 ? C16 ORA 79 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #