data_3OVN # _model_server_result.job_id gA5DdelIpeT0HqpjnsOg9A _model_server_result.datetime_utc '2024-11-22 13:46:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ovn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1001}' # _entry.id 3OVN # _exptl.entry_id 3OVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OVN _cell.length_a 59.75 _cell.length_b 59.704 _cell.length_c 81.818 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 J N N ? 5 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC D 1 SUC 2 n C FRU 2 C 2 FRU D 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 GLC . C GLC 1 1_555 C O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 sing metalc ? metalc1 A SG CYS 16 A CYS 65 1_555 F CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 A SG CYS 16 A CYS 65 1_555 G CD CD . A CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A NE2 HIS 18 A HIS 67 1_555 F CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 A OE1 GLU 43 A GLU 92 1_555 F CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc5 A OE2 GLU 43 A GLU 92 1_555 G CD CD . A CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 A OD2 ASP 67 A ASP 116 1_555 G CD CD . A CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 L O HOH . A HOH 214 1_555 G CD CD . A CD 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc8 L O HOH . A HOH 217 1_555 F CD CD . A CD 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc9 M O HOH . B HOH 40 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc10 M O HOH . B HOH 43 1_555 K CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc11 B SG CYS 16 B CYS 65 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc12 B SG CYS 16 B CYS 65 1_555 K CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc13 B NE2 HIS 18 B HIS 67 1_555 K CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc14 B OE2 GLU 43 B GLU 92 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 B OE1 GLU 43 B GLU 92 1_555 K CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc16 B OD2 ASP 67 B ASP 116 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc17 M O HOH . B HOH 214 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc18 M O HOH . B HOH 217 1_555 J CD CD . B CD 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc19 M O HOH . B HOH 217 1_555 K CD CD . B CD 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OVN _atom_sites.fract_transf_matrix[1][1] 0.016736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SO4 A 1 1 1 SO4 SO4 . E 4 MPV A 1 213 1 MPV MPA . F 5 CD A 1 1003 1003 CD CD . G 5 CD A 1 1004 1004 CD CD . H 3 SO4 B 1 2 2 SO4 SO4 . I 4 MPV B 1 213 1 MPV MPA . J 5 CD B 1 1001 1001 CD CD . K 5 CD B 1 1002 1002 CD CD . L 6 HOH A 1 5 5 HOH HOH . L 6 HOH A 2 7 7 HOH HOH . L 6 HOH A 3 8 8 HOH HOH . L 6 HOH A 4 10 10 HOH HOH . L 6 HOH A 5 13 13 HOH HOH . L 6 HOH A 6 14 14 HOH HOH . L 6 HOH A 7 15 15 HOH HOH . L 6 HOH A 8 16 16 HOH HOH . L 6 HOH A 9 18 18 HOH HOH . L 6 HOH A 10 20 20 HOH HOH . L 6 HOH A 11 24 24 HOH HOH . L 6 HOH A 12 25 25 HOH HOH . L 6 HOH A 13 27 27 HOH HOH . L 6 HOH A 14 28 28 HOH HOH . L 6 HOH A 15 31 31 HOH HOH . L 6 HOH A 16 32 32 HOH HOH . L 6 HOH A 17 33 33 HOH HOH . L 6 HOH A 18 38 38 HOH HOH . L 6 HOH A 19 44 44 HOH HOH . L 6 HOH A 20 49 49 HOH HOH . L 6 HOH A 21 214 1 HOH HOH . L 6 HOH A 22 215 51 HOH HOH . L 6 HOH A 23 216 52 HOH HOH . L 6 HOH A 24 217 53 HOH HOH . L 6 HOH A 25 218 56 HOH HOH . L 6 HOH A 26 219 57 HOH HOH . M 6 HOH B 1 3 3 HOH HOH . M 6 HOH B 2 4 4 HOH HOH . M 6 HOH B 3 6 6 HOH HOH . M 6 HOH B 4 9 9 HOH HOH . M 6 HOH B 5 11 11 HOH HOH . M 6 HOH B 6 12 12 HOH HOH . M 6 HOH B 7 17 17 HOH HOH . M 6 HOH B 8 19 19 HOH HOH . M 6 HOH B 9 21 21 HOH HOH . M 6 HOH B 10 22 22 HOH HOH . M 6 HOH B 11 23 23 HOH HOH . M 6 HOH B 12 26 26 HOH HOH . M 6 HOH B 13 29 29 HOH HOH . M 6 HOH B 14 30 30 HOH HOH . M 6 HOH B 15 34 34 HOH HOH . M 6 HOH B 16 35 35 HOH HOH . M 6 HOH B 17 36 36 HOH HOH . M 6 HOH B 18 37 37 HOH HOH . M 6 HOH B 19 39 39 HOH HOH . M 6 HOH B 20 40 40 HOH HOH . M 6 HOH B 21 41 41 HOH HOH . M 6 HOH B 22 42 42 HOH HOH . M 6 HOH B 23 43 43 HOH HOH . M 6 HOH B 24 45 45 HOH HOH . M 6 HOH B 25 46 46 HOH HOH . M 6 HOH B 26 47 47 HOH HOH . M 6 HOH B 27 48 48 HOH HOH . M 6 HOH B 28 214 2 HOH HOH . M 6 HOH B 29 215 50 HOH HOH . M 6 HOH B 30 216 54 HOH HOH . M 6 HOH B 31 217 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 12.105 _atom_site.Cartn_y -8.616 _atom_site.Cartn_z -7.115 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #