data_3OVQ
#
_model_server_result.job_id            MJvkUN_IdfljJi5sCbviSw 
_model_server_result.datetime_utc      '2024-10-18 06:22:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ovq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":230}' 
#
_entry.id    3OVQ 
#
_exptl.entry_id    3OVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBULOSE-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.88 
_cell.angle_gamma         90 
_cell.entry_id            3OVQ 
_cell.length_a            61.785 
_cell.length_b            43.535 
_cell.length_c            72.269 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OVQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 217 A CYS 217 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 217 A CYS 217 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 5 B CYS 5 1_555 B SG CYS 217 B CYS 217 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 5 B CYS 5 1_555 B SG CYS 217 B CYS 217 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A NE2 HIS 35 A HIS 35 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 A OD1 ASP 37 A ASP 37 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 A ND1 HIS 70 A HIS 70 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc4 A OD2 ASP 175 A ASP 175 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc5 C FE FE2 . A FE2 229 1_555 D O4 5RP . A 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc6 C FE FE2 . A FE2 229 1_555 D O13 5RP . A 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc7 B NE2 HIS 35 B HIS 35 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc8 B OD1 ASP 37 B ASP 37 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc9 B ND1 HIS 70 B HIS 70 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc10 B OD2 ASP 175 B ASP 175 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc11 I FE FE2 . B FE2 229 1_555 J O4 5RP . B 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc12 I FE FE2 . B FE2 229 1_555 J O13 5RP . B 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                5RP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBULOSE-5-PHOSPHATE 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 5RP sing 1 n n 
C2 O1 5RP sing 2 n n 
C2 H21 5RP sing 3 n n 
C2 H22 5RP sing 4 n n 
C3 C5 5RP sing 5 n n 
C3 O4 5RP doub 6 n n 
C5 O13 5RP sing 7 n n 
C5 C6 5RP sing 8 n n 
C5 H5 5RP sing 9 n n 
O13 H13 5RP sing 10 n n 
C6 O14 5RP sing 11 n n 
C6 C7 5RP sing 12 n n 
C6 H6 5RP sing 13 n n 
O14 H14 5RP sing 14 n n 
C7 O8 5RP sing 15 n n 
C7 H71 5RP sing 16 n n 
C7 H72 5RP sing 17 n n 
O8 P9 5RP sing 18 n n 
P9 O12 5RP doub 19 n n 
P9 O11 5RP sing 20 n n 
P9 O10 5RP sing 21 n n 
O11 H11 5RP sing 22 n n 
O10 H10 5RP sing 23 n n 
O1 HO1 5RP sing 24 n n 
#
_atom_sites.entry_id                     3OVQ 
_atom_sites.fract_transf_matrix[1][1]    0.016185 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001382 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02297 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE2 A 1 229 229 FE2 FE2 . 
D 3 5RP A 1 230 230 5RP 5RP . 
E 4 XPE A 1 231 231 XPE XPE . 
F 4 XPE A 1 232 232 XPE XPE . 
G 4 XPE A 1 233 233 XPE XPE . 
H 4 XPE A 1 234 234 XPE XPE . 
I 2 FE2 B 1 229 229 FE2 FE2 . 
J 3 5RP B 1 230 230 5RP 5RP . 
K 4 XPE B 1 231 231 XPE XPE . 
L 4 XPE B 1 232 232 XPE XPE . 
M 4 XPE B 1 233 233 XPE XPE . 
N 5 HOH A 1 235 235 HOH HOH . 
N 5 HOH A 2 236 236 HOH HOH . 
N 5 HOH A 3 237 237 HOH HOH . 
N 5 HOH A 4 238 238 HOH HOH . 
N 5 HOH A 5 239 239 HOH HOH . 
N 5 HOH A 6 240 240 HOH HOH . 
N 5 HOH A 7 241 241 HOH HOH . 
N 5 HOH A 8 242 242 HOH HOH . 
N 5 HOH A 9 243 243 HOH HOH . 
N 5 HOH A 10 244 244 HOH HOH . 
N 5 HOH A 11 245 245 HOH HOH . 
N 5 HOH A 12 246 246 HOH HOH . 
N 5 HOH A 13 247 247 HOH HOH . 
N 5 HOH A 14 248 248 HOH HOH . 
N 5 HOH A 15 249 249 HOH HOH . 
N 5 HOH A 16 250 250 HOH HOH . 
N 5 HOH A 17 251 251 HOH HOH . 
N 5 HOH A 18 252 252 HOH HOH . 
N 5 HOH A 19 253 253 HOH HOH . 
N 5 HOH A 20 254 254 HOH HOH . 
N 5 HOH A 21 255 255 HOH HOH . 
N 5 HOH A 22 256 256 HOH HOH . 
N 5 HOH A 23 257 257 HOH HOH . 
N 5 HOH A 24 258 258 HOH HOH . 
N 5 HOH A 25 259 259 HOH HOH . 
N 5 HOH A 26 260 260 HOH HOH . 
N 5 HOH A 27 261 261 HOH HOH . 
N 5 HOH A 28 262 262 HOH HOH . 
N 5 HOH A 29 263 263 HOH HOH . 
N 5 HOH A 30 264 264 HOH HOH . 
N 5 HOH A 31 265 265 HOH HOH . 
N 5 HOH A 32 266 266 HOH HOH . 
N 5 HOH A 33 267 267 HOH HOH . 
N 5 HOH A 34 268 268 HOH HOH . 
N 5 HOH A 35 269 269 HOH HOH . 
N 5 HOH A 36 270 270 HOH HOH . 
N 5 HOH A 37 271 271 HOH HOH . 
N 5 HOH A 38 272 272 HOH HOH . 
N 5 HOH A 39 273 273 HOH HOH . 
N 5 HOH A 40 274 274 HOH HOH . 
N 5 HOH A 41 275 275 HOH HOH . 
N 5 HOH A 42 276 276 HOH HOH . 
N 5 HOH A 43 277 277 HOH HOH . 
N 5 HOH A 44 278 278 HOH HOH . 
N 5 HOH A 45 279 279 HOH HOH . 
N 5 HOH A 46 280 280 HOH HOH . 
N 5 HOH A 47 281 281 HOH HOH . 
N 5 HOH A 48 282 282 HOH HOH . 
N 5 HOH A 49 283 283 HOH HOH . 
N 5 HOH A 50 284 284 HOH HOH . 
N 5 HOH A 51 285 285 HOH HOH . 
N 5 HOH A 52 286 286 HOH HOH . 
N 5 HOH A 53 287 287 HOH HOH . 
N 5 HOH A 54 288 288 HOH HOH . 
N 5 HOH A 55 289 289 HOH HOH . 
N 5 HOH A 56 290 290 HOH HOH . 
N 5 HOH A 57 291 291 HOH HOH . 
N 5 HOH A 58 292 292 HOH HOH . 
N 5 HOH A 59 293 293 HOH HOH . 
N 5 HOH A 60 294 294 HOH HOH . 
N 5 HOH A 61 295 295 HOH HOH . 
N 5 HOH A 62 296 296 HOH HOH . 
N 5 HOH A 63 297 297 HOH HOH . 
N 5 HOH A 64 298 298 HOH HOH . 
N 5 HOH A 65 299 299 HOH HOH . 
N 5 HOH A 66 300 300 HOH HOH . 
N 5 HOH A 67 301 301 HOH HOH . 
N 5 HOH A 68 302 302 HOH HOH . 
N 5 HOH A 69 303 303 HOH HOH . 
O 5 HOH B 1 234 234 HOH HOH . 
O 5 HOH B 2 235 235 HOH HOH . 
O 5 HOH B 3 236 236 HOH HOH . 
O 5 HOH B 4 237 237 HOH HOH . 
O 5 HOH B 5 238 238 HOH HOH . 
O 5 HOH B 6 239 239 HOH HOH . 
O 5 HOH B 7 240 240 HOH HOH . 
O 5 HOH B 8 241 241 HOH HOH . 
O 5 HOH B 9 242 242 HOH HOH . 
O 5 HOH B 10 243 243 HOH HOH . 
O 5 HOH B 11 244 244 HOH HOH . 
O 5 HOH B 12 245 245 HOH HOH . 
O 5 HOH B 13 246 246 HOH HOH . 
O 5 HOH B 14 247 247 HOH HOH . 
O 5 HOH B 15 248 248 HOH HOH . 
O 5 HOH B 16 249 249 HOH HOH . 
O 5 HOH B 17 250 250 HOH HOH . 
O 5 HOH B 18 251 251 HOH HOH . 
O 5 HOH B 19 252 252 HOH HOH . 
O 5 HOH B 20 253 253 HOH HOH . 
O 5 HOH B 21 254 254 HOH HOH . 
O 5 HOH B 22 255 255 HOH HOH . 
O 5 HOH B 23 256 256 HOH HOH . 
O 5 HOH B 24 257 257 HOH HOH . 
O 5 HOH B 25 258 258 HOH HOH . 
O 5 HOH B 26 259 259 HOH HOH . 
O 5 HOH B 27 260 260 HOH HOH . 
O 5 HOH B 28 261 261 HOH HOH . 
O 5 HOH B 29 262 262 HOH HOH . 
O 5 HOH B 30 263 263 HOH HOH . 
O 5 HOH B 31 264 264 HOH HOH . 
O 5 HOH B 32 265 265 HOH HOH . 
O 5 HOH B 33 266 266 HOH HOH . 
O 5 HOH B 34 267 267 HOH HOH . 
O 5 HOH B 35 268 268 HOH HOH . 
O 5 HOH B 36 269 269 HOH HOH . 
O 5 HOH B 37 270 270 HOH HOH . 
O 5 HOH B 38 271 271 HOH HOH . 
O 5 HOH B 39 272 272 HOH HOH . 
O 5 HOH B 40 273 273 HOH HOH . 
O 5 HOH B 41 274 274 HOH HOH . 
O 5 HOH B 42 275 275 HOH HOH . 
O 5 HOH B 43 276 276 HOH HOH . 
O 5 HOH B 44 277 277 HOH HOH . 
O 5 HOH B 45 278 278 HOH HOH . 
O 5 HOH B 46 279 279 HOH HOH . 
O 5 HOH B 47 280 280 HOH HOH . 
O 5 HOH B 48 281 281 HOH HOH . 
O 5 HOH B 49 282 282 HOH HOH . 
O 5 HOH B 50 283 283 HOH HOH . 
O 5 HOH B 51 284 284 HOH HOH . 
O 5 HOH B 52 285 285 HOH HOH . 
O 5 HOH B 53 286 286 HOH HOH . 
O 5 HOH B 54 287 287 HOH HOH . 
O 5 HOH B 55 288 288 HOH HOH . 
O 5 HOH B 56 289 289 HOH HOH . 
O 5 HOH B 57 290 290 HOH HOH . 
O 5 HOH B 58 291 291 HOH HOH . 
O 5 HOH B 59 292 292 HOH HOH . 
O 5 HOH B 60 293 293 HOH HOH . 
O 5 HOH B 61 294 294 HOH HOH . 
O 5 HOH B 62 295 295 HOH HOH . 
O 5 HOH B 63 296 296 HOH HOH . 
O 5 HOH B 64 297 297 HOH HOH . 
O 5 HOH B 65 298 298 HOH HOH . 
O 5 HOH B 66 299 299 HOH HOH . 
O 5 HOH B 67 300 300 HOH HOH . 
O 5 HOH B 68 301 301 HOH HOH . 
O 5 HOH B 69 302 302 HOH HOH . 
O 5 HOH B 70 303 303 HOH HOH . 
O 5 HOH B 71 304 304 HOH HOH . 
O 5 HOH B 72 305 305 HOH HOH . 
O 5 HOH B 73 306 306 HOH HOH . 
O 5 HOH B 74 307 307 HOH HOH . 
O 5 HOH B 75 308 308 HOH HOH . 
O 5 HOH B 76 309 309 HOH HOH . 
O 5 HOH B 77 310 310 HOH HOH . 
O 5 HOH B 78 311 311 HOH HOH . 
O 5 HOH B 79 312 312 HOH HOH . 
O 5 HOH B 80 313 313 HOH HOH . 
O 5 HOH B 81 314 314 HOH HOH . 
O 5 HOH B 82 315 315 HOH HOH . 
O 5 HOH B 83 316 316 HOH HOH . 
O 5 HOH B 84 317 317 HOH HOH . 
O 5 HOH B 85 318 318 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 5RP . . . D 3 8.534 7.511 20.522 1 28.23 ? C2 5RP 230 A 1 
HETATM 2 C C3 5RP . . . D 3 9.674 6.911 21.308 1 31.84 ? C3 5RP 230 A 1 
HETATM 3 C C5 5RP . . . D 3 10.921 7.711 21.614 1 35.34 ? C5 5RP 230 A 1 
HETATM 4 O O13 5RP . . . D 3 11.737 7.025 22.585 1 21.27 ? O13 5RP 230 A 1 
HETATM 5 C C6 5RP . . . D 3 10.593 9.129 22.093 1 40.33 ? C6 5RP 230 A 1 
HETATM 6 O O14 5RP . . . D 3 10.011 9.888 21.031 1 49.94 ? O14 5RP 230 A 1 
HETATM 7 C C7 5RP . . . D 3 11.837 9.9 22.524 1 43.3 ? C7 5RP 230 A 1 
HETATM 8 O O8 5RP . . . D 3 11.922 11.063 21.698 1 47.77 ? O8 5RP 230 A 1 
HETATM 9 P P9 5RP . . . D 3 11.635 12.572 22.217 1 34.44 ? P9 5RP 230 A 1 
HETATM 10 O O12 5RP . . . D 3 12.425 12.671 23.502 1 27.77 ? O12 5RP 230 A 1 
HETATM 11 O O11 5RP . . . D 3 12.206 13.404 21.089 1 35.15 ? O11 5RP 230 A 1 
HETATM 12 O O10 5RP . . . D 3 10.145 12.675 22.372 1 32.51 ? O10 5RP 230 A 1 
HETATM 13 O O4 5RP . . . D 3 9.563 5.75 21.674 1 26.66 ? O4 5RP 230 A 1 
HETATM 14 O O1 5RP . . . D 3 7.74 6.422 20.033 1 25.63 ? O1 5RP 230 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#