data_3OVQ # _model_server_result.job_id CYnwTntY7Tt0lvBEI0GXmA _model_server_result.datetime_utc '2024-11-23 23:25:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ovq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":231}' # _entry.id 3OVQ # _exptl.entry_id 3OVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.541 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.88 _cell.angle_gamma 90 _cell.entry_id 3OVQ _cell.length_a 61.785 _cell.length_b 43.535 _cell.length_c 72.269 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 217 A CYS 217 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 217 A CYS 217 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 5 B CYS 5 1_555 B SG CYS 217 B CYS 217 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 5 B CYS 5 1_555 B SG CYS 217 B CYS 217 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 35 A HIS 35 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A OD1 ASP 37 A ASP 37 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A ND1 HIS 70 A HIS 70 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 A OD2 ASP 175 A ASP 175 1_555 C FE FE2 . A FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 C FE FE2 . A FE2 229 1_555 D O4 5RP . A 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc6 C FE FE2 . A FE2 229 1_555 D O13 5RP . A 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 B NE2 HIS 35 B HIS 35 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B OD1 ASP 37 B ASP 37 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc9 B ND1 HIS 70 B HIS 70 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 B OD2 ASP 175 B ASP 175 1_555 I FE FE2 . B FE2 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc11 I FE FE2 . B FE2 229 1_555 J O4 5RP . B 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc12 I FE FE2 . B FE2 229 1_555 J O13 5RP . B 5RP 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C20 H42 O11' _chem_comp.formula_weight 458.541 _chem_comp.id XPE _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DECAETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 XPE sing 400 n n O1 HO1 XPE sing 401 n n C2 C3 XPE sing 402 n n C2 H21 XPE sing 403 n n C2 H22 XPE sing 404 n n C3 O4 XPE sing 405 n n C3 H31A XPE sing 406 n n C3 H32 XPE sing 407 n n O4 C5 XPE sing 408 n n C5 C6 XPE sing 409 n n C5 H51 XPE sing 410 n n C5 H52 XPE sing 411 n n C6 O7 XPE sing 412 n n C6 H61 XPE sing 413 n n C6 H62 XPE sing 414 n n O7 C8 XPE sing 415 n n C8 C9 XPE sing 416 n n C8 H81 XPE sing 417 n n C8 H82 XPE sing 418 n n C9 O10 XPE sing 419 n n C9 H91 XPE sing 420 n n C9 H92 XPE sing 421 n n O10 C11 XPE sing 422 n n C11 C12 XPE sing 423 n n C11 H111 XPE sing 424 n n C11 H112 XPE sing 425 n n C12 O13 XPE sing 426 n n C12 H121 XPE sing 427 n n C12 H122 XPE sing 428 n n O13 C14 XPE sing 429 n n C14 C15 XPE sing 430 n n C14 H141 XPE sing 431 n n C14 H142 XPE sing 432 n n C15 O16 XPE sing 433 n n C15 H151 XPE sing 434 n n C15 H152 XPE sing 435 n n O16 C17 XPE sing 436 n n C17 C18 XPE sing 437 n n C17 H171 XPE sing 438 n n C17 H172 XPE sing 439 n n C18 O19 XPE sing 440 n n C18 H181 XPE sing 441 n n C18 H182 XPE sing 442 n n O19 C20 XPE sing 443 n n C20 C21 XPE sing 444 n n C20 H201 XPE sing 445 n n C20 H202 XPE sing 446 n n C21 O22 XPE sing 447 n n C21 H211 XPE sing 448 n n C21 H212 XPE sing 449 n n O22 C23 XPE sing 450 n n C23 C24 XPE sing 451 n n C23 H231 XPE sing 452 n n C23 H232 XPE sing 453 n n C24 O25 XPE sing 454 n n C24 H241 XPE sing 455 n n C24 H242 XPE sing 456 n n O25 C26 XPE sing 457 n n C26 C27 XPE sing 458 n n C26 H261 XPE sing 459 n n C26 H262 XPE sing 460 n n C27 O28 XPE sing 461 n n C27 H271 XPE sing 462 n n C27 H272 XPE sing 463 n n O28 C29 XPE sing 464 n n C29 C30 XPE sing 465 n n C29 H291 XPE sing 466 n n C29 H292 XPE sing 467 n n C30 O31 XPE sing 468 n n C30 H301 XPE sing 469 n n C30 H302 XPE sing 470 n n O31 H31 XPE sing 471 n n # _atom_sites.entry_id 3OVQ _atom_sites.fract_transf_matrix[1][1] 0.016185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 229 229 FE2 FE2 . D 3 5RP A 1 230 230 5RP 5RP . E 4 XPE A 1 231 231 XPE XPE . F 4 XPE A 1 232 232 XPE XPE . G 4 XPE A 1 233 233 XPE XPE . H 4 XPE A 1 234 234 XPE XPE . I 2 FE2 B 1 229 229 FE2 FE2 . J 3 5RP B 1 230 230 5RP 5RP . K 4 XPE B 1 231 231 XPE XPE . L 4 XPE B 1 232 232 XPE XPE . M 4 XPE B 1 233 233 XPE XPE . N 5 HOH A 1 235 235 HOH HOH . N 5 HOH A 2 236 236 HOH HOH . N 5 HOH A 3 237 237 HOH HOH . N 5 HOH A 4 238 238 HOH HOH . N 5 HOH A 5 239 239 HOH HOH . N 5 HOH A 6 240 240 HOH HOH . N 5 HOH A 7 241 241 HOH HOH . N 5 HOH A 8 242 242 HOH HOH . N 5 HOH A 9 243 243 HOH HOH . N 5 HOH A 10 244 244 HOH HOH . N 5 HOH A 11 245 245 HOH HOH . N 5 HOH A 12 246 246 HOH HOH . N 5 HOH A 13 247 247 HOH HOH . N 5 HOH A 14 248 248 HOH HOH . N 5 HOH A 15 249 249 HOH HOH . N 5 HOH A 16 250 250 HOH HOH . N 5 HOH A 17 251 251 HOH HOH . N 5 HOH A 18 252 252 HOH HOH . N 5 HOH A 19 253 253 HOH HOH . N 5 HOH A 20 254 254 HOH HOH . N 5 HOH A 21 255 255 HOH HOH . N 5 HOH A 22 256 256 HOH HOH . N 5 HOH A 23 257 257 HOH HOH . N 5 HOH A 24 258 258 HOH HOH . N 5 HOH A 25 259 259 HOH HOH . N 5 HOH A 26 260 260 HOH HOH . N 5 HOH A 27 261 261 HOH HOH . N 5 HOH A 28 262 262 HOH HOH . N 5 HOH A 29 263 263 HOH HOH . N 5 HOH A 30 264 264 HOH HOH . N 5 HOH A 31 265 265 HOH HOH . N 5 HOH A 32 266 266 HOH HOH . N 5 HOH A 33 267 267 HOH HOH . N 5 HOH A 34 268 268 HOH HOH . N 5 HOH A 35 269 269 HOH HOH . N 5 HOH A 36 270 270 HOH HOH . N 5 HOH A 37 271 271 HOH HOH . N 5 HOH A 38 272 272 HOH HOH . N 5 HOH A 39 273 273 HOH HOH . N 5 HOH A 40 274 274 HOH HOH . N 5 HOH A 41 275 275 HOH HOH . N 5 HOH A 42 276 276 HOH HOH . N 5 HOH A 43 277 277 HOH HOH . N 5 HOH A 44 278 278 HOH HOH . N 5 HOH A 45 279 279 HOH HOH . N 5 HOH A 46 280 280 HOH HOH . N 5 HOH A 47 281 281 HOH HOH . N 5 HOH A 48 282 282 HOH HOH . N 5 HOH A 49 283 283 HOH HOH . N 5 HOH A 50 284 284 HOH HOH . N 5 HOH A 51 285 285 HOH HOH . N 5 HOH A 52 286 286 HOH HOH . N 5 HOH A 53 287 287 HOH HOH . N 5 HOH A 54 288 288 HOH HOH . N 5 HOH A 55 289 289 HOH HOH . N 5 HOH A 56 290 290 HOH HOH . N 5 HOH A 57 291 291 HOH HOH . N 5 HOH A 58 292 292 HOH HOH . N 5 HOH A 59 293 293 HOH HOH . N 5 HOH A 60 294 294 HOH HOH . N 5 HOH A 61 295 295 HOH HOH . N 5 HOH A 62 296 296 HOH HOH . N 5 HOH A 63 297 297 HOH HOH . N 5 HOH A 64 298 298 HOH HOH . N 5 HOH A 65 299 299 HOH HOH . N 5 HOH A 66 300 300 HOH HOH . N 5 HOH A 67 301 301 HOH HOH . N 5 HOH A 68 302 302 HOH HOH . N 5 HOH A 69 303 303 HOH HOH . O 5 HOH B 1 234 234 HOH HOH . O 5 HOH B 2 235 235 HOH HOH . O 5 HOH B 3 236 236 HOH HOH . O 5 HOH B 4 237 237 HOH HOH . O 5 HOH B 5 238 238 HOH HOH . O 5 HOH B 6 239 239 HOH HOH . O 5 HOH B 7 240 240 HOH HOH . O 5 HOH B 8 241 241 HOH HOH . O 5 HOH B 9 242 242 HOH HOH . O 5 HOH B 10 243 243 HOH HOH . O 5 HOH B 11 244 244 HOH HOH . O 5 HOH B 12 245 245 HOH HOH . O 5 HOH B 13 246 246 HOH HOH . O 5 HOH B 14 247 247 HOH HOH . O 5 HOH B 15 248 248 HOH HOH . O 5 HOH B 16 249 249 HOH HOH . O 5 HOH B 17 250 250 HOH HOH . O 5 HOH B 18 251 251 HOH HOH . O 5 HOH B 19 252 252 HOH HOH . O 5 HOH B 20 253 253 HOH HOH . O 5 HOH B 21 254 254 HOH HOH . O 5 HOH B 22 255 255 HOH HOH . O 5 HOH B 23 256 256 HOH HOH . O 5 HOH B 24 257 257 HOH HOH . O 5 HOH B 25 258 258 HOH HOH . O 5 HOH B 26 259 259 HOH HOH . O 5 HOH B 27 260 260 HOH HOH . O 5 HOH B 28 261 261 HOH HOH . O 5 HOH B 29 262 262 HOH HOH . O 5 HOH B 30 263 263 HOH HOH . O 5 HOH B 31 264 264 HOH HOH . O 5 HOH B 32 265 265 HOH HOH . O 5 HOH B 33 266 266 HOH HOH . O 5 HOH B 34 267 267 HOH HOH . O 5 HOH B 35 268 268 HOH HOH . O 5 HOH B 36 269 269 HOH HOH . O 5 HOH B 37 270 270 HOH HOH . O 5 HOH B 38 271 271 HOH HOH . O 5 HOH B 39 272 272 HOH HOH . O 5 HOH B 40 273 273 HOH HOH . O 5 HOH B 41 274 274 HOH HOH . O 5 HOH B 42 275 275 HOH HOH . O 5 HOH B 43 276 276 HOH HOH . O 5 HOH B 44 277 277 HOH HOH . O 5 HOH B 45 278 278 HOH HOH . O 5 HOH B 46 279 279 HOH HOH . O 5 HOH B 47 280 280 HOH HOH . O 5 HOH B 48 281 281 HOH HOH . O 5 HOH B 49 282 282 HOH HOH . O 5 HOH B 50 283 283 HOH HOH . O 5 HOH B 51 284 284 HOH HOH . O 5 HOH B 52 285 285 HOH HOH . O 5 HOH B 53 286 286 HOH HOH . O 5 HOH B 54 287 287 HOH HOH . O 5 HOH B 55 288 288 HOH HOH . O 5 HOH B 56 289 289 HOH HOH . O 5 HOH B 57 290 290 HOH HOH . O 5 HOH B 58 291 291 HOH HOH . O 5 HOH B 59 292 292 HOH HOH . O 5 HOH B 60 293 293 HOH HOH . O 5 HOH B 61 294 294 HOH HOH . O 5 HOH B 62 295 295 HOH HOH . O 5 HOH B 63 296 296 HOH HOH . O 5 HOH B 64 297 297 HOH HOH . O 5 HOH B 65 298 298 HOH HOH . O 5 HOH B 66 299 299 HOH HOH . O 5 HOH B 67 300 300 HOH HOH . O 5 HOH B 68 301 301 HOH HOH . O 5 HOH B 69 302 302 HOH HOH . O 5 HOH B 70 303 303 HOH HOH . O 5 HOH B 71 304 304 HOH HOH . O 5 HOH B 72 305 305 HOH HOH . O 5 HOH B 73 306 306 HOH HOH . O 5 HOH B 74 307 307 HOH HOH . O 5 HOH B 75 308 308 HOH HOH . O 5 HOH B 76 309 309 HOH HOH . O 5 HOH B 77 310 310 HOH HOH . O 5 HOH B 78 311 311 HOH HOH . O 5 HOH B 79 312 312 HOH HOH . O 5 HOH B 80 313 313 HOH HOH . O 5 HOH B 81 314 314 HOH HOH . O 5 HOH B 82 315 315 HOH HOH . O 5 HOH B 83 316 316 HOH HOH . O 5 HOH B 84 317 317 HOH HOH . O 5 HOH B 85 318 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 XPE . . . E 4 18.722 0.717 37.48 1 63.89 ? C3 XPE 231 A 1 HETATM 2 O O4 XPE . . . E 4 18.766 0.78 36.053 1 64.42 ? O4 XPE 231 A 1 HETATM 3 C C5 XPE . . . E 4 19.123 -0.471 35.471 1 51.1 ? C5 XPE 231 A 1 HETATM 4 C C6 XPE . . . E 4 19.437 -0.288 33.989 1 46.1 ? C6 XPE 231 A 1 HETATM 5 O O7 XPE . . . E 4 20.611 0.509 33.846 1 50.45 ? O7 XPE 231 A 1 HETATM 6 C C8 XPE . . . E 4 21.45 0.049 32.796 1 45.69 ? C8 XPE 231 A 1 HETATM 7 C C9 XPE . . . E 4 22.638 0.989 32.631 1 51.16 ? C9 XPE 231 A 1 HETATM 8 O O10 XPE . . . E 4 23.545 0.836 33.718 1 56.45 ? O10 XPE 231 A 1 HETATM 9 C C11 XPE . . . E 4 24.461 1.925 33.798 1 59.16 ? C11 XPE 231 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #