data_3OVU
#
_model_server_result.job_id            boiOG_Hm-YyaPXrYx9GggA 
_model_server_result.datetime_utc      '2025-08-07 06:49:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ovu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":142}' 
#
_entry.id    3OVU 
#
_exptl.entry_id    3OVU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OVU 
_cell.length_a            68.638 
_cell.length_b            71.659 
_cell.length_c            82.058 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OVU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NE2 HIS 58 C HIS 58 1_555 D FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc2 C NE2 HIS 89 C HIS 89 1_555 D FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3OVU 
_atom_sites.fract_transf_matrix[1][1]    0.014569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012187 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 HEM C 1 142 1 HEM HEM . 
E 5 HOH B 1 2 2 HOH HOH . 
E 5 HOH B 2 3 3 HOH HOH . 
F 5 HOH C 1 143 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 4 -6.491 12.934 25.727 1 65.73 ? CHA HEM 142 C 1 
HETATM 2 C CHB HEM . . . D 4 -7.036 13.575 20.936 1 66.33 ? CHB HEM 142 C 1 
HETATM 3 C CHC HEM . . . D 4 -6.403 18.365 21.481 1 65.51 ? CHC HEM 142 C 1 
HETATM 4 C CHD HEM . . . D 4 -5.837 17.775 26.274 1 65.46 ? CHD HEM 142 C 1 
HETATM 5 C C1A HEM . . . D 4 -6.694 12.692 24.384 1 66.12 ? C1A HEM 142 C 1 
HETATM 6 C C2A HEM . . . D 4 -6.922 11.395 23.778 1 66.85 ? C2A HEM 142 C 1 
HETATM 7 C C3A HEM . . . D 4 -7.072 11.569 22.463 1 66.66 ? C3A HEM 142 C 1 
HETATM 8 C C4A HEM . . . D 4 -6.944 12.984 22.178 1 66.35 ? C4A HEM 142 C 1 
HETATM 9 C CMA HEM . . . D 4 -7.336 10.456 21.426 1 66.83 ? CMA HEM 142 C 1 
HETATM 10 C CAA HEM . . . D 4 -6.983 10.041 24.519 1 67.26 ? CAA HEM 142 C 1 
HETATM 11 C CBA HEM . . . D 4 -8.428 9.707 24.875 1 67.51 ? CBA HEM 142 C 1 
HETATM 12 C CGA HEM . . . D 4 -8.548 8.23 25.136 1 67.74 ? CGA HEM 142 C 1 
HETATM 13 O O1A HEM . . . D 4 -8.086 7.778 26.214 1 67.13 ? O1A HEM 142 C 1 
HETATM 14 O O2A HEM . . . D 4 -9.103 7.507 24.268 1 68.52 ? O2A HEM 142 C 1 
HETATM 15 C C1B HEM . . . D 4 -6.913 14.921 20.665 1 65.83 ? C1B HEM 142 C 1 
HETATM 16 C C2B HEM . . . D 4 -7.009 15.544 19.36 1 65.59 ? C2B HEM 142 C 1 
HETATM 17 C C3B HEM . . . D 4 -6.836 16.858 19.512 1 65.44 ? C3B HEM 142 C 1 
HETATM 18 C C4B HEM . . . D 4 -6.623 17.125 20.92 1 65.57 ? C4B HEM 142 C 1 
HETATM 19 C CMB HEM . . . D 4 -7.268 14.815 18.023 1 65.24 ? CMB HEM 142 C 1 
HETATM 20 C CAB HEM . . . D 4 -6.854 17.913 18.385 1 65.36 ? CAB HEM 142 C 1 
HETATM 21 C CBB HEM . . . D 4 -8.003 18.239 17.787 1 65.52 ? CBB HEM 142 C 1 
HETATM 22 C C1C HEM . . . D 4 -6.195 18.624 22.818 1 65.24 ? C1C HEM 142 C 1 
HETATM 23 C C2C HEM . . . D 4 -5.956 19.926 23.403 1 65.02 ? C2C HEM 142 C 1 
HETATM 24 C C3C HEM . . . D 4 -5.799 19.766 24.718 1 65.7 ? C3C HEM 142 C 1 
HETATM 25 C C4C HEM . . . D 4 -5.932 18.354 25.024 1 65.71 ? C4C HEM 142 C 1 
HETATM 26 C CMC HEM . . . D 4 -5.895 21.268 22.641 1 64.01 ? CMC HEM 142 C 1 
HETATM 27 C CAC HEM . . . D 4 -5.525 20.898 25.734 1 66.13 ? CAC HEM 142 C 1 
HETATM 28 C CBC HEM . . . D 4 -4.334 20.974 26.338 1 65.56 ? CBC HEM 142 C 1 
HETATM 29 C C1D HEM . . . D 4 -5.958 16.433 26.583 1 65.62 ? C1D HEM 142 C 1 
HETATM 30 C C2D HEM . . . D 4 -5.85 15.872 27.912 1 65.48 ? C2D HEM 142 C 1 
HETATM 31 C C3D HEM . . . D 4 -6.052 14.36 27.74 1 65.76 ? C3D HEM 142 C 1 
HETATM 32 C C4D HEM . . . D 4 -6.266 14.158 26.324 1 65.42 ? C4D HEM 142 C 1 
HETATM 33 C CMD HEM . . . D 4 -5.586 16.631 29.23 1 64.72 ? CMD HEM 142 C 1 
HETATM 34 C CAD HEM . . . D 4 -6.038 13.287 28.853 1 66.82 ? CAD HEM 142 C 1 
HETATM 35 C CBD HEM . . . D 4 -4.872 12.321 28.651 1 67.58 ? CBD HEM 142 C 1 
HETATM 36 C CGD HEM . . . D 4 -4.767 11.408 29.844 1 68.51 ? CGD HEM 142 C 1 
HETATM 37 O O1D HEM . . . D 4 -4.262 11.861 30.904 1 69.24 ? O1D HEM 142 C 1 
HETATM 38 O O2D HEM . . . D 4 -5.189 10.226 29.738 1 68.49 ? O2D HEM 142 C 1 
HETATM 39 N NA HEM . . . D 4 -6.71 13.636 23.375 1 66.05 ? NA HEM 142 C 1 
HETATM 40 N NB HEM . . . D 4 -6.675 15.918 21.595 1 66 ? NB HEM 142 C 1 
HETATM 41 N NC HEM . . . D 4 -6.172 17.689 23.837 1 65.77 ? NC HEM 142 C 1 
HETATM 42 N ND HEM . . . D 4 -6.202 15.395 25.685 1 65.78 ? ND HEM 142 C 1 
HETATM 43 FE FE HEM . . . D 4 -6.441 15.653 23.645 1 66.53 ? FE HEM 142 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#