data_3OVZ # _model_server_result.job_id 0JIS6mXxpSK1q3ap1sYFEA _model_server_result.datetime_utc '2024-12-04 07:20:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ovz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OVZ # _exptl.entry_id 3OVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.804 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1S)-3-amino-1-ethyl-2,3-dioxopropyl]-2-chloro-4-(pyridin-2-ylmethoxy)-3-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OVZ _cell.length_a 55.741 _cell.length_b 55.741 _cell.length_c 128.916 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 22 1_555 A SG CYS 61 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 54 A CYS 56 1_555 A SG CYS 94 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 153 A CYS 155 1_555 A SG CYS 202 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C19 H17 Cl F3 N3 O4' _chem_comp.formula_weight 443.804 _chem_comp.id O96 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1S)-3-amino-1-ethyl-2,3-dioxopropyl]-2-chloro-4-(pyridin-2-ylmethoxy)-3-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 O96 sing 237 n n N1 HN1 O96 sing 238 n n N1 HN1A O96 sing 239 n n C4 O47 O96 doub 240 n n C5 C4 O96 sing 241 n n C5 C6 O96 sing 242 n n C6 C39 O96 sing 243 n n C6 H6 O96 sing 244 n n N8 C6 O96 sing 245 n n N8 C10 O96 sing 246 n n N8 HN8 O96 sing 247 n n C10 O38 O96 doub 248 n n C11 C10 O96 sing 249 n n C11 C12 O96 sing 250 n y C12 H12 O96 sing 251 n n C14 C12 O96 doub 252 n y C14 H14 O96 sing 253 n n C16 C14 O96 sing 254 n y C17 C16 O96 doub 255 n y C17 C18 O96 sing 256 n y C18 C11 O96 doub 257 n y CL19 C18 O96 sing 258 n n C20 C17 O96 sing 259 n n C20 F23 O96 sing 260 n n F21 C20 O96 sing 261 n n F22 C20 O96 sing 262 n n O24 C16 O96 sing 263 n n O24 C25 O96 sing 264 n n C25 H25 O96 sing 265 n n C25 H25A O96 sing 266 n n C28 C25 O96 sing 267 n n C28 C36 O96 sing 268 n y N29 C28 O96 doub 269 n y C30 N29 O96 sing 270 n y C30 C32 O96 doub 271 n y C30 H30 O96 sing 272 n n C32 C34 O96 sing 273 n y C32 H32 O96 sing 274 n n C34 C36 O96 doub 275 n y C34 H34 O96 sing 276 n n C36 H36 O96 sing 277 n n C39 C42 O96 sing 278 n n C39 H39 O96 sing 279 n n C39 H39A O96 sing 280 n n C42 H42 O96 sing 281 n n C42 H42A O96 sing 282 n n C42 H42B O96 sing 283 n n O46 C5 O96 doub 284 n n # _atom_sites.entry_id 3OVZ _atom_sites.fract_transf_matrix[1][1] 0.01794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O96 A 1 1 1 O96 O96 . C 3 SO4 A 1 216 1 SO4 SO4 . D 3 SO4 A 1 2 2 SO4 SO4 . E 4 HOH A 1 217 1 HOH HOH . E 4 HOH A 2 218 2 HOH HOH . E 4 HOH A 3 219 3 HOH HOH . E 4 HOH A 4 220 4 HOH HOH . E 4 HOH A 5 221 5 HOH HOH . E 4 HOH A 6 222 6 HOH HOH . E 4 HOH A 7 223 7 HOH HOH . E 4 HOH A 8 224 9 HOH HOH . E 4 HOH A 9 225 10 HOH HOH . E 4 HOH A 10 226 11 HOH HOH . E 4 HOH A 11 227 12 HOH HOH . E 4 HOH A 12 228 13 HOH HOH . E 4 HOH A 13 229 14 HOH HOH . E 4 HOH A 14 230 15 HOH HOH . E 4 HOH A 15 231 16 HOH HOH . E 4 HOH A 16 232 17 HOH HOH . E 4 HOH A 17 233 18 HOH HOH . E 4 HOH A 18 234 19 HOH HOH . E 4 HOH A 19 235 20 HOH HOH . E 4 HOH A 20 236 21 HOH HOH . E 4 HOH A 21 237 22 HOH HOH . E 4 HOH A 22 238 23 HOH HOH . E 4 HOH A 23 239 24 HOH HOH . E 4 HOH A 24 240 25 HOH HOH . E 4 HOH A 25 241 26 HOH HOH . E 4 HOH A 26 242 27 HOH HOH . E 4 HOH A 27 243 28 HOH HOH . E 4 HOH A 28 244 29 HOH HOH . E 4 HOH A 29 245 30 HOH HOH . E 4 HOH A 30 246 31 HOH HOH . E 4 HOH A 31 247 32 HOH HOH . E 4 HOH A 32 248 33 HOH HOH . E 4 HOH A 33 249 34 HOH HOH . E 4 HOH A 34 250 35 HOH HOH . E 4 HOH A 35 251 36 HOH HOH . E 4 HOH A 36 252 37 HOH HOH . E 4 HOH A 37 253 38 HOH HOH . E 4 HOH A 38 254 39 HOH HOH . E 4 HOH A 39 255 40 HOH HOH . E 4 HOH A 40 256 41 HOH HOH . E 4 HOH A 41 257 42 HOH HOH . E 4 HOH A 42 258 43 HOH HOH . E 4 HOH A 43 259 44 HOH HOH . E 4 HOH A 44 260 45 HOH HOH . E 4 HOH A 45 261 47 HOH HOH . E 4 HOH A 46 262 48 HOH HOH . E 4 HOH A 47 263 49 HOH HOH . E 4 HOH A 48 264 50 HOH HOH . E 4 HOH A 49 265 51 HOH HOH . E 4 HOH A 50 266 53 HOH HOH . E 4 HOH A 51 267 54 HOH HOH . E 4 HOH A 52 268 55 HOH HOH . E 4 HOH A 53 269 56 HOH HOH . E 4 HOH A 54 270 57 HOH HOH . E 4 HOH A 55 271 58 HOH HOH . E 4 HOH A 56 272 59 HOH HOH . E 4 HOH A 57 273 60 HOH HOH . E 4 HOH A 58 274 61 HOH HOH . E 4 HOH A 59 275 62 HOH HOH . E 4 HOH A 60 276 63 HOH HOH . E 4 HOH A 61 277 64 HOH HOH . E 4 HOH A 62 278 65 HOH HOH . E 4 HOH A 63 279 67 HOH HOH . E 4 HOH A 64 280 69 HOH HOH . E 4 HOH A 65 281 70 HOH HOH . E 4 HOH A 66 282 71 HOH HOH . E 4 HOH A 67 283 72 HOH HOH . E 4 HOH A 68 284 73 HOH HOH . E 4 HOH A 69 285 74 HOH HOH . E 4 HOH A 70 286 75 HOH HOH . E 4 HOH A 71 287 76 HOH HOH . E 4 HOH A 72 288 77 HOH HOH . E 4 HOH A 73 289 78 HOH HOH . E 4 HOH A 74 290 79 HOH HOH . E 4 HOH A 75 291 80 HOH HOH . E 4 HOH A 76 292 81 HOH HOH . E 4 HOH A 77 293 82 HOH HOH . E 4 HOH A 78 294 84 HOH HOH . E 4 HOH A 79 295 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O96 . . . B 2 11.327 -20.538 -2.92 1 27.52 ? N1 O96 1 A 1 HETATM 2 C C4 O96 . . . B 2 10.06 -20.152 -2.587 1 30.49 ? C4 O96 1 A 1 HETATM 3 C C5 O96 . . . B 2 9.56 -19.005 -3.496 1 30.31 ? C5 O96 1 A 1 HETATM 4 C C6 O96 . . . B 2 10.458 -17.746 -3.468 1 29.64 ? C6 O96 1 A 1 HETATM 5 N N8 O96 . . . B 2 9.936 -16.654 -4.305 1 30.37 ? N8 O96 1 A 1 HETATM 6 C C10 O96 . . . B 2 10.633 -16.013 -5.314 1 32.21 ? C10 O96 1 A 1 HETATM 7 C C11 O96 . . . B 2 9.869 -14.927 -5.927 1 31.9 ? C11 O96 1 A 1 HETATM 8 C C12 O96 . . . B 2 9.986 -13.681 -5.32 1 33.97 ? C12 O96 1 A 1 HETATM 9 C C14 O96 . . . B 2 9.26 -12.606 -5.818 1 33.73 ? C14 O96 1 A 1 HETATM 10 C C16 O96 . . . B 2 8.399 -12.763 -6.93 1 33 ? C16 O96 1 A 1 HETATM 11 C C17 O96 . . . B 2 8.272 -14.004 -7.55 1 32.74 ? C17 O96 1 A 1 HETATM 12 C C18 O96 . . . B 2 9.004 -15.071 -7.011 1 33.21 ? C18 O96 1 A 1 HETATM 13 CL CL19 O96 . . . B 2 8.862 -16.607 -7.716 1 34.18 ? CL19 O96 1 A 1 HETATM 14 C C20 O96 . . . B 2 7.316 -14.166 -8.709 1 34.58 ? C20 O96 1 A 1 HETATM 15 F F21 O96 . . . B 2 7.772 -14.474 -9.944 1 38.67 ? F21 O96 1 A 1 HETATM 16 F F22 O96 . . . B 2 6.491 -15.176 -8.41 1 39.61 ? F22 O96 1 A 1 HETATM 17 F F23 O96 . . . B 2 6.47 -13.129 -8.957 1 38.76 ? F23 O96 1 A 1 HETATM 18 O O24 O96 . . . B 2 7.65 -11.79 -7.513 1 31.87 ? O24 O96 1 A 1 HETATM 19 C C25 O96 . . . B 2 7.767 -10.465 -7.003 1 35.66 ? C25 O96 1 A 1 HETATM 20 C C28 O96 . . . B 2 7.089 -9.469 -7.893 1 35.67 ? C28 O96 1 A 1 HETATM 21 N N29 O96 . . . B 2 7.26 -8.181 -7.539 1 36.96 ? N29 O96 1 A 1 HETATM 22 C C30 O96 . . . B 2 6.672 -7.247 -8.324 1 38.65 ? C30 O96 1 A 1 HETATM 23 C C32 O96 . . . B 2 5.925 -7.55 -9.446 1 37.43 ? C32 O96 1 A 1 HETATM 24 C C34 O96 . . . B 2 5.788 -8.864 -9.804 1 37.09 ? C34 O96 1 A 1 HETATM 25 C C36 O96 . . . B 2 6.363 -9.838 -9.009 1 36.07 ? C36 O96 1 A 1 HETATM 26 O O38 O96 . . . B 2 11.759 -16.305 -5.701 1 31.79 ? O38 O96 1 A 1 HETATM 27 C C39 O96 . . . B 2 10.609 -17.239 -2.013 1 27.77 ? C39 O96 1 A 1 HETATM 28 C C42 O96 . . . B 2 11.743 -16.236 -1.872 1 20.92 ? C42 O96 1 A 1 HETATM 29 O O46 O96 . . . B 2 8.183 -18.759 -3.218 1 29.16 ? O46 O96 1 A 1 HETATM 30 O O47 O96 . . . B 2 9.424 -20.7 -1.701 1 32.09 ? O47 O96 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #