data_3OW4 # _model_server_result.job_id Bmryw7BU6hcCwd4HzA-0HQ _model_server_result.datetime_utc '2024-12-26 18:48:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ow4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3OW4 # _exptl.entry_id 3OW4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-3-(1H-indol-3-yl)-1-{4-[(5S)-5-methyl-5,7-dihydrothieno[3,4-d]pyrimidin-4-yl]piperazin-1-yl}-1-oxopropan-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.93 _cell.angle_gamma 90 _cell.entry_id 3OW4 _cell.length_a 86.427 _cell.length_b 55.823 _cell.length_c 91.354 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OW4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 168 A LYS 307 1_555 A N TPO 169 A TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C TPO 169 A TPO 308 1_555 A N PHE 170 A PHE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C LYS 168 B LYS 307 1_555 B N TPO 169 B TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C TPO 169 B TPO 308 1_555 B N PHE 170 B PHE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C22 H26 N6 O S' _chem_comp.formula_weight 422.546 _chem_comp.id SMY _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-3-(1H-indol-3-yl)-1-{4-[(5S)-5-methyl-5,7-dihydrothieno[3,4-d]pyrimidin-4-yl]piperazin-1-yl}-1-oxopropan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SMY doub 290 n y N1 C6 SMY sing 291 n y C2 N3 SMY sing 292 n y N3 C4 SMY doub 293 n y C4 C5 SMY sing 294 n y C4 C7 SMY sing 295 n n C5 C6 SMY doub 296 n y C5 C9 SMY sing 297 n n C6 N11 SMY sing 298 n n C7 S8 SMY sing 299 n n S8 C9 SMY sing 300 n n C9 C10 SMY sing 301 n n N11 C12 SMY sing 302 n n N11 C16 SMY sing 303 n n C12 C13 SMY sing 304 n n C13 N14 SMY sing 305 n n N14 C15 SMY sing 306 n n N14 C17 SMY sing 307 n n C15 C16 SMY sing 308 n n C17 O18 SMY doub 309 n n C17 C19 SMY sing 310 n n C19 C20 SMY sing 311 n n C19 N30 SMY sing 312 n n C20 C21 SMY sing 313 n n C21 C22 SMY doub 314 n y C21 C25 SMY sing 315 n y C22 N23 SMY sing 316 n y N23 C24 SMY sing 317 n y C24 C25 SMY doub 318 n y C24 C26 SMY sing 319 n y C25 C29 SMY sing 320 n y C26 C27 SMY doub 321 n y C27 C28 SMY sing 322 n y C28 C29 SMY doub 323 n y C2 H2 SMY sing 324 n n C7 H7 SMY sing 325 n n C7 H7A SMY sing 326 n n C9 H9 SMY sing 327 n n C10 H10 SMY sing 328 n n C10 H10A SMY sing 329 n n C10 H10B SMY sing 330 n n C12 H12 SMY sing 331 n n C12 H12A SMY sing 332 n n C13 H13 SMY sing 333 n n C13 H13A SMY sing 334 n n C15 H15 SMY sing 335 n n C15 H15A SMY sing 336 n n C16 H16 SMY sing 337 n n C16 H16A SMY sing 338 n n C19 H19 SMY sing 339 n n C20 H20 SMY sing 340 n n C20 H20A SMY sing 341 n n C22 H22 SMY sing 342 n n N23 HN23 SMY sing 343 n n C26 H26 SMY sing 344 n n C27 H27 SMY sing 345 n n C28 H28 SMY sing 346 n n C29 H29 SMY sing 347 n n N30 HN30 SMY sing 348 n n N30 HN3A SMY sing 349 n n # _atom_sites.entry_id 3OW4 _atom_sites.fract_transf_matrix[1][1] 0.01157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002869 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SMY A 1 1 1 SMY SMY . F 3 SMY B 1 2 2 SMY SMY . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 6 6 HOH HOH . G 4 HOH A 4 8 8 HOH HOH . G 4 HOH A 5 9 9 HOH HOH . G 4 HOH A 6 10 10 HOH HOH . G 4 HOH A 7 14 14 HOH HOH . G 4 HOH A 8 15 15 HOH HOH . G 4 HOH A 9 16 16 HOH HOH . G 4 HOH A 10 17 17 HOH HOH . G 4 HOH A 11 18 18 HOH HOH . G 4 HOH A 12 19 19 HOH HOH . G 4 HOH A 13 21 21 HOH HOH . G 4 HOH A 14 22 22 HOH HOH . G 4 HOH A 15 23 23 HOH HOH . G 4 HOH A 16 24 24 HOH HOH . G 4 HOH A 17 25 25 HOH HOH . G 4 HOH A 18 26 26 HOH HOH . G 4 HOH A 19 28 28 HOH HOH . G 4 HOH A 20 29 29 HOH HOH . G 4 HOH A 21 30 30 HOH HOH . G 4 HOH A 22 31 31 HOH HOH . G 4 HOH A 23 33 33 HOH HOH . G 4 HOH A 24 35 35 HOH HOH . G 4 HOH A 25 38 38 HOH HOH . G 4 HOH A 26 39 39 HOH HOH . G 4 HOH A 27 44 44 HOH HOH . G 4 HOH A 28 45 45 HOH HOH . G 4 HOH A 29 46 46 HOH HOH . G 4 HOH A 30 48 48 HOH HOH . G 4 HOH A 31 49 49 HOH HOH . G 4 HOH A 32 50 50 HOH HOH . G 4 HOH A 33 52 52 HOH HOH . G 4 HOH A 34 53 53 HOH HOH . G 4 HOH A 35 54 54 HOH HOH . G 4 HOH A 36 60 60 HOH HOH . G 4 HOH A 37 61 61 HOH HOH . G 4 HOH A 38 62 62 HOH HOH . G 4 HOH A 39 63 63 HOH HOH . G 4 HOH A 40 64 64 HOH HOH . G 4 HOH A 41 65 65 HOH HOH . G 4 HOH A 42 66 66 HOH HOH . G 4 HOH A 43 68 68 HOH HOH . G 4 HOH A 44 69 69 HOH HOH . G 4 HOH A 45 73 73 HOH HOH . G 4 HOH A 46 74 74 HOH HOH . G 4 HOH A 47 75 75 HOH HOH . G 4 HOH A 48 78 78 HOH HOH . G 4 HOH A 49 79 79 HOH HOH . G 4 HOH A 50 80 80 HOH HOH . G 4 HOH A 51 82 82 HOH HOH . G 4 HOH A 52 87 87 HOH HOH . G 4 HOH A 53 90 90 HOH HOH . G 4 HOH A 54 91 91 HOH HOH . G 4 HOH A 55 93 93 HOH HOH . G 4 HOH A 56 95 95 HOH HOH . G 4 HOH A 57 96 96 HOH HOH . G 4 HOH A 58 97 97 HOH HOH . G 4 HOH A 59 98 98 HOH HOH . G 4 HOH A 60 99 99 HOH HOH . G 4 HOH A 61 103 103 HOH HOH . G 4 HOH A 62 105 105 HOH HOH . G 4 HOH A 63 107 107 HOH HOH . G 4 HOH A 64 109 109 HOH HOH . G 4 HOH A 65 110 110 HOH HOH . G 4 HOH A 66 112 112 HOH HOH . G 4 HOH A 67 117 117 HOH HOH . G 4 HOH A 68 119 119 HOH HOH . G 4 HOH A 69 120 120 HOH HOH . G 4 HOH A 70 123 123 HOH HOH . G 4 HOH A 71 124 124 HOH HOH . G 4 HOH A 72 127 127 HOH HOH . G 4 HOH A 73 130 130 HOH HOH . G 4 HOH A 74 132 132 HOH HOH . G 4 HOH A 75 133 133 HOH HOH . G 4 HOH A 76 481 1 HOH HOH . G 4 HOH A 77 482 140 HOH HOH . G 4 HOH A 78 483 142 HOH HOH . G 4 HOH A 79 484 143 HOH HOH . G 4 HOH A 80 485 148 HOH HOH . G 4 HOH A 81 486 151 HOH HOH . G 4 HOH A 82 487 156 HOH HOH . G 4 HOH A 83 488 157 HOH HOH . G 4 HOH A 84 489 158 HOH HOH . G 4 HOH A 85 490 159 HOH HOH . G 4 HOH A 86 491 161 HOH HOH . G 4 HOH A 87 492 163 HOH HOH . G 4 HOH A 88 493 167 HOH HOH . G 4 HOH A 89 494 168 HOH HOH . G 4 HOH A 90 495 170 HOH HOH . G 4 HOH A 91 496 172 HOH HOH . G 4 HOH A 92 497 173 HOH HOH . G 4 HOH A 93 498 174 HOH HOH . G 4 HOH A 94 499 177 HOH HOH . G 4 HOH A 95 500 147 HOH HOH . H 4 HOH B 1 5 5 HOH HOH . H 4 HOH B 2 7 7 HOH HOH . H 4 HOH B 3 11 11 HOH HOH . H 4 HOH B 4 12 12 HOH HOH . H 4 HOH B 5 13 13 HOH HOH . H 4 HOH B 6 20 20 HOH HOH . H 4 HOH B 7 27 27 HOH HOH . H 4 HOH B 8 32 32 HOH HOH . H 4 HOH B 9 34 34 HOH HOH . H 4 HOH B 10 36 36 HOH HOH . H 4 HOH B 11 37 37 HOH HOH . H 4 HOH B 12 40 40 HOH HOH . H 4 HOH B 13 41 41 HOH HOH . H 4 HOH B 14 42 42 HOH HOH . H 4 HOH B 15 43 43 HOH HOH . H 4 HOH B 16 47 47 HOH HOH . H 4 HOH B 17 51 51 HOH HOH . H 4 HOH B 18 55 55 HOH HOH . H 4 HOH B 19 56 56 HOH HOH . H 4 HOH B 20 57 57 HOH HOH . H 4 HOH B 21 58 58 HOH HOH . H 4 HOH B 22 59 59 HOH HOH . H 4 HOH B 23 67 67 HOH HOH . H 4 HOH B 24 71 71 HOH HOH . H 4 HOH B 25 76 76 HOH HOH . H 4 HOH B 26 81 81 HOH HOH . H 4 HOH B 27 83 83 HOH HOH . H 4 HOH B 28 85 85 HOH HOH . H 4 HOH B 29 86 86 HOH HOH . H 4 HOH B 30 88 88 HOH HOH . H 4 HOH B 31 89 89 HOH HOH . H 4 HOH B 32 94 94 HOH HOH . H 4 HOH B 33 100 100 HOH HOH . H 4 HOH B 34 101 101 HOH HOH . H 4 HOH B 35 102 102 HOH HOH . H 4 HOH B 36 104 104 HOH HOH . H 4 HOH B 37 106 106 HOH HOH . H 4 HOH B 38 108 108 HOH HOH . H 4 HOH B 39 111 111 HOH HOH . H 4 HOH B 40 116 116 HOH HOH . H 4 HOH B 41 118 118 HOH HOH . H 4 HOH B 42 122 122 HOH HOH . H 4 HOH B 43 125 125 HOH HOH . H 4 HOH B 44 126 126 HOH HOH . H 4 HOH B 45 128 128 HOH HOH . H 4 HOH B 46 129 129 HOH HOH . H 4 HOH B 47 131 131 HOH HOH . H 4 HOH B 48 134 134 HOH HOH . H 4 HOH B 49 135 135 HOH HOH . H 4 HOH B 50 136 136 HOH HOH . H 4 HOH B 51 137 137 HOH HOH . H 4 HOH B 52 138 138 HOH HOH . H 4 HOH B 53 139 139 HOH HOH . H 4 HOH B 54 481 2 HOH HOH . H 4 HOH B 55 482 144 HOH HOH . H 4 HOH B 56 483 145 HOH HOH . H 4 HOH B 57 484 146 HOH HOH . H 4 HOH B 58 485 149 HOH HOH . H 4 HOH B 59 486 150 HOH HOH . H 4 HOH B 60 487 152 HOH HOH . H 4 HOH B 61 488 153 HOH HOH . H 4 HOH B 62 489 154 HOH HOH . H 4 HOH B 63 490 160 HOH HOH . H 4 HOH B 64 491 164 HOH HOH . H 4 HOH B 65 492 165 HOH HOH . H 4 HOH B 66 493 166 HOH HOH . H 4 HOH B 67 494 169 HOH HOH . H 4 HOH B 68 495 171 HOH HOH . H 4 HOH B 69 496 175 HOH HOH . H 4 HOH B 70 497 176 HOH HOH . H 4 HOH B 71 498 178 HOH HOH . H 4 HOH B 72 499 179 HOH HOH . I 4 HOH C 1 92 92 HOH HOH . I 4 HOH C 2 155 155 HOH HOH . I 4 HOH C 3 162 162 HOH HOH . J 4 HOH D 1 77 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SMY . . . E 3 14.875 -3.917 15.365 1 41.76 ? N1 SMY 1 A 1 HETATM 2 C C2 SMY . . . E 3 16.103 -4.325 15.006 1 41 ? C2 SMY 1 A 1 HETATM 3 N N3 SMY . . . E 3 17.219 -3.585 14.967 1 40.72 ? N3 SMY 1 A 1 HETATM 4 C C4 SMY . . . E 3 17.105 -2.299 15.321 1 40.39 ? C4 SMY 1 A 1 HETATM 5 C C5 SMY . . . E 3 15.865 -1.768 15.705 1 41.59 ? C5 SMY 1 A 1 HETATM 6 C C6 SMY . . . E 3 14.731 -2.627 15.71 1 43.83 ? C6 SMY 1 A 1 HETATM 7 C C7 SMY . . . E 3 18.272 -1.347 15.317 1 38.94 ? C7 SMY 1 A 1 HETATM 8 S S8 SMY . . . E 3 17.53 0.282 15.626 1 39.05 ? S8 SMY 1 A 1 HETATM 9 C C9 SMY . . . E 3 15.853 -0.292 16.054 1 40.23 ? C9 SMY 1 A 1 HETATM 10 C C10 SMY . . . E 3 14.914 0.489 15.13 1 38.06 ? C10 SMY 1 A 1 HETATM 11 N N11 SMY . . . E 3 13.459 -2.233 16.113 1 46.41 ? N11 SMY 1 A 1 HETATM 12 C C12 SMY . . . E 3 13.348 -1.535 17.415 1 46.38 ? C12 SMY 1 A 1 HETATM 13 C C13 SMY . . . E 3 12.02 -0.808 17.636 1 46.26 ? C13 SMY 1 A 1 HETATM 14 N N14 SMY . . . E 3 10.952 -1.813 17.496 1 47.11 ? N14 SMY 1 A 1 HETATM 15 C C15 SMY . . . E 3 10.978 -2.55 16.219 1 45.46 ? C15 SMY 1 A 1 HETATM 16 C C16 SMY . . . E 3 12.348 -3.177 15.928 1 46.18 ? C16 SMY 1 A 1 HETATM 17 C C17 SMY . . . E 3 9.798 -1.683 18.193 1 48.1 ? C17 SMY 1 A 1 HETATM 18 O O18 SMY . . . E 3 8.855 -2.476 18.059 1 48.83 ? O18 SMY 1 A 1 HETATM 19 C C19 SMY . . . E 3 9.858 -1 19.532 1 48.72 ? C19 SMY 1 A 1 HETATM 20 C C20 SMY . . . E 3 8.997 0.274 19.609 1 47.99 ? C20 SMY 1 A 1 HETATM 21 C C21 SMY . . . E 3 9.335 1.475 18.734 1 48.27 ? C21 SMY 1 A 1 HETATM 22 C C22 SMY . . . E 3 10.079 2.585 19.055 1 48.72 ? C22 SMY 1 A 1 HETATM 23 N N23 SMY . . . E 3 10.178 3.536 18.007 1 48.04 ? N23 SMY 1 A 1 HETATM 24 C C24 SMY . . . E 3 9.453 3.001 16.981 1 49.26 ? C24 SMY 1 A 1 HETATM 25 C C25 SMY . . . E 3 8.923 1.766 17.37 1 48.99 ? C25 SMY 1 A 1 HETATM 26 C C26 SMY . . . E 3 9.21 3.518 15.687 1 49.66 ? C26 SMY 1 A 1 HETATM 27 C C27 SMY . . . E 3 8.409 2.749 14.806 1 49.69 ? C27 SMY 1 A 1 HETATM 28 C C28 SMY . . . E 3 7.87 1.497 15.204 1 49.39 ? C28 SMY 1 A 1 HETATM 29 C C29 SMY . . . E 3 8.125 0.992 16.497 1 48.66 ? C29 SMY 1 A 1 HETATM 30 N N30 SMY . . . E 3 9.497 -2.029 20.545 1 47.71 ? N30 SMY 1 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #