data_3OWF
#
_model_server_result.job_id            ES1ewrtjrFuXrGwHvQf01Q 
_model_server_result.datetime_utc      '2024-10-11 10:19:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3owf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":150}' 
#
_entry.id    3OWF 
#
_exptl.entry_id    3OWF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.188 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "THYMIDINE-3',5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OWF 
_cell.length_a            94.509 
_cell.length_b            94.509 
_cell.length_c            38.57 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OWF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -12.856667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc4 B O5P THP . A THP 150 1_555 C CA CA . A CA 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc5 C CA CA . A CA 151 1_555 E O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc6 C CA CA . A CA 151 1_555 E O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc7 C CA CA . A CA 151 1_555 E O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
#
_chem_comp.formula           'C10 H16 N2 O11 P2' 
_chem_comp.formula_weight    402.188 
_chem_comp.id                THP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2 O4P THP doub 281 n n 
P2 O5P THP sing 282 n n 
P2 O6P THP sing 283 n n 
P2 O5' THP sing 284 n n 
O5P HOP5 THP sing 285 n n 
O6P HOP6 THP sing 286 n n 
P1 O1P THP doub 287 n n 
P1 O2P THP sing 288 n n 
P1 O3P THP sing 289 n n 
P1 O3' THP sing 290 n n 
O2P HOP2 THP sing 291 n n 
O3P HOP3 THP sing 292 n n 
O5' C5' THP sing 293 n n 
C5' C4' THP sing 294 n n 
C5' "H5'1" THP sing 295 n n 
C5' "H5'2" THP sing 296 n n 
C4' O4' THP sing 297 n n 
C4' C3' THP sing 298 n n 
C4' H4' THP sing 299 n n 
O4' C1' THP sing 300 n n 
C3' O3' THP sing 301 n n 
C3' C2' THP sing 302 n n 
C3' H3' THP sing 303 n n 
C2' C1' THP sing 304 n n 
C2' "H2'1" THP sing 305 n n 
C2' "H2'2" THP sing 306 n n 
C1' N1 THP sing 307 n n 
C1' H1' THP sing 308 n n 
N1 C2 THP sing 309 n n 
N1 C6 THP sing 310 n n 
C2 O2 THP doub 311 n n 
C2 N3 THP sing 312 n n 
N3 C4 THP sing 313 n n 
N3 H3 THP sing 314 n n 
C4 O4 THP doub 315 n n 
C4 C5 THP sing 316 n n 
C5 C5M THP sing 317 n n 
C5 C6 THP doub 318 n n 
C5M H51 THP sing 319 n n 
C5M H52 THP sing 320 n n 
C5M H53 THP sing 321 n n 
C6 H6 THP sing 322 n n 
#
_atom_sites.entry_id                     3OWF 
_atom_sites.fract_transf_matrix[1][1]    0.010581 
_atom_sites.fract_transf_matrix[1][2]    0.006109 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025927 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 THP A 1 150 150 THP THP . 
C 3 CA A 1 151 151 CA CA . 
D 4 PO4 A 1 152 152 PO4 PO4 . 
E 5 HOH A 1 201 201 HOH HOH . 
E 5 HOH A 2 202 202 HOH HOH . 
E 5 HOH A 3 203 203 HOH HOH . 
E 5 HOH A 4 204 204 HOH HOH . 
E 5 HOH A 5 205 205 HOH HOH . 
E 5 HOH A 6 206 206 HOH HOH . 
E 5 HOH A 7 207 207 HOH HOH . 
E 5 HOH A 8 208 208 HOH HOH . 
E 5 HOH A 9 209 209 HOH HOH . 
E 5 HOH A 10 210 210 HOH HOH . 
E 5 HOH A 11 211 211 HOH HOH . 
E 5 HOH A 12 212 212 HOH HOH . 
E 5 HOH A 13 213 213 HOH HOH . 
E 5 HOH A 14 214 214 HOH HOH . 
E 5 HOH A 15 215 215 HOH HOH . 
E 5 HOH A 16 216 216 HOH HOH . 
E 5 HOH A 17 217 217 HOH HOH . 
E 5 HOH A 18 218 218 HOH HOH . 
E 5 HOH A 19 219 219 HOH HOH . 
E 5 HOH A 20 220 220 HOH HOH . 
E 5 HOH A 21 221 221 HOH HOH . 
E 5 HOH A 22 222 222 HOH HOH . 
E 5 HOH A 23 223 223 HOH HOH . 
E 5 HOH A 24 224 224 HOH HOH . 
E 5 HOH A 25 225 225 HOH HOH . 
E 5 HOH A 26 226 226 HOH HOH . 
E 5 HOH A 27 227 227 HOH HOH . 
E 5 HOH A 28 228 228 HOH HOH . 
E 5 HOH A 29 229 229 HOH HOH . 
E 5 HOH A 30 230 230 HOH HOH . 
E 5 HOH A 31 231 231 HOH HOH . 
E 5 HOH A 32 232 232 HOH HOH . 
E 5 HOH A 33 233 233 HOH HOH . 
E 5 HOH A 34 234 234 HOH HOH . 
E 5 HOH A 35 235 235 HOH HOH . 
E 5 HOH A 36 236 236 HOH HOH . 
E 5 HOH A 37 237 237 HOH HOH . 
E 5 HOH A 38 238 238 HOH HOH . 
E 5 HOH A 39 239 239 HOH HOH . 
E 5 HOH A 40 240 240 HOH HOH . 
E 5 HOH A 41 241 241 HOH HOH . 
E 5 HOH A 42 242 242 HOH HOH . 
E 5 HOH A 43 243 243 HOH HOH . 
E 5 HOH A 44 244 244 HOH HOH . 
E 5 HOH A 45 245 245 HOH HOH . 
E 5 HOH A 46 246 246 HOH HOH . 
E 5 HOH A 47 247 247 HOH HOH . 
E 5 HOH A 48 248 248 HOH HOH . 
E 5 HOH A 49 249 249 HOH HOH . 
E 5 HOH A 50 250 250 HOH HOH . 
E 5 HOH A 51 251 251 HOH HOH . 
E 5 HOH A 52 252 252 HOH HOH . 
E 5 HOH A 53 253 253 HOH HOH . 
E 5 HOH A 54 254 254 HOH HOH . 
E 5 HOH A 55 255 255 HOH HOH . 
E 5 HOH A 56 256 256 HOH HOH . 
E 5 HOH A 57 257 257 HOH HOH . 
E 5 HOH A 58 258 258 HOH HOH . 
E 5 HOH A 59 259 259 HOH HOH . 
E 5 HOH A 60 260 260 HOH HOH . 
E 5 HOH A 61 261 261 HOH HOH . 
E 5 HOH A 62 262 262 HOH HOH . 
E 5 HOH A 63 263 263 HOH HOH . 
E 5 HOH A 64 264 264 HOH HOH . 
E 5 HOH A 65 265 265 HOH HOH . 
E 5 HOH A 66 266 266 HOH HOH . 
E 5 HOH A 67 267 267 HOH HOH . 
E 5 HOH A 68 268 268 HOH HOH . 
E 5 HOH A 69 269 269 HOH HOH . 
E 5 HOH A 70 270 270 HOH HOH . 
E 5 HOH A 71 271 271 HOH HOH . 
E 5 HOH A 72 272 272 HOH HOH . 
E 5 HOH A 73 273 273 HOH HOH . 
E 5 HOH A 74 274 274 HOH HOH . 
E 5 HOH A 75 275 275 HOH HOH . 
E 5 HOH A 76 276 276 HOH HOH . 
E 5 HOH A 77 277 277 HOH HOH . 
E 5 HOH A 78 278 278 HOH HOH . 
E 5 HOH A 79 279 279 HOH HOH . 
E 5 HOH A 80 280 280 HOH HOH . 
E 5 HOH A 81 281 281 HOH HOH . 
E 5 HOH A 82 282 282 HOH HOH . 
E 5 HOH A 83 283 283 HOH HOH . 
E 5 HOH A 84 284 284 HOH HOH . 
E 5 HOH A 85 285 285 HOH HOH . 
E 5 HOH A 86 286 286 HOH HOH . 
E 5 HOH A 87 287 287 HOH HOH . 
E 5 HOH A 88 288 288 HOH HOH . 
E 5 HOH A 89 289 289 HOH HOH . 
E 5 HOH A 90 290 290 HOH HOH . 
E 5 HOH A 91 291 291 HOH HOH . 
E 5 HOH A 92 292 292 HOH HOH . 
E 5 HOH A 93 293 293 HOH HOH . 
E 5 HOH A 94 294 294 HOH HOH . 
E 5 HOH A 95 295 295 HOH HOH . 
E 5 HOH A 96 296 296 HOH HOH . 
E 5 HOH A 97 297 297 HOH HOH . 
E 5 HOH A 98 298 298 HOH HOH . 
E 5 HOH A 99 299 299 HOH HOH . 
E 5 HOH A 100 300 300 HOH HOH . 
E 5 HOH A 101 301 301 HOH HOH . 
E 5 HOH A 102 302 302 HOH HOH . 
E 5 HOH A 103 303 303 HOH HOH . 
E 5 HOH A 104 304 304 HOH HOH . 
E 5 HOH A 105 305 305 HOH HOH . 
E 5 HOH A 106 306 306 HOH HOH . 
E 5 HOH A 107 307 307 HOH HOH . 
E 5 HOH A 108 308 308 HOH HOH . 
E 5 HOH A 109 309 309 HOH HOH . 
E 5 HOH A 110 310 310 HOH HOH . 
E 5 HOH A 111 311 311 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2 THP . . . B 2 35.855 -28.796 0.279 1 15.1 ? P2 THP 150 A 1 
HETATM 2 O O4P THP . . . B 2 35.796 -29.862 1.354 1 13.77 ? O4P THP 150 A 1 
HETATM 3 O O5P THP . . . B 2 35.867 -27.36 0.875 1 15.53 ? O5P THP 150 A 1 
HETATM 4 O O6P THP . . . B 2 34.759 -29.02 -0.781 1 14.81 ? O6P THP 150 A 1 
HETATM 5 P P1 THP . . . B 2 42.364 -31.927 1 1 21.98 ? P1 THP 150 A 1 
HETATM 6 O O1P THP . . . B 2 43.629 -31.27 0.586 1 22.27 ? O1P THP 150 A 1 
HETATM 7 O O2P THP . . . B 2 42.375 -33.468 0.768 1 23.06 ? O2P THP 150 A 1 
HETATM 8 O O3P THP . . . B 2 41.856 -31.427 2.406 1 25.66 ? O3P THP 150 A 1 
HETATM 9 O O5' THP . . . B 2 37.232 -28.969 -0.571 1 14.35 ? O5' THP 150 A 1 
HETATM 10 C C5' THP . . . B 2 38.494 -28.919 0.098 1 14.08 ? C5' THP 150 A 1 
HETATM 11 C C4' THP . . . B 2 39.338 -30.045 -0.525 1 14.69 ? C4' THP 150 A 1 
HETATM 12 O O4' THP . . . B 2 39.316 -29.904 -1.961 1 15.99 ? O4' THP 150 A 1 
HETATM 13 C C3' THP . . . B 2 40.834 -30.018 -0.079 1 13.95 ? C3' THP 150 A 1 
HETATM 14 O O3' THP . . . B 2 41.212 -31.408 -0.078 1 18.97 ? O3' THP 150 A 1 
HETATM 15 C C2' THP . . . B 2 41.491 -29.266 -1.289 1 18.93 ? C2' THP 150 A 1 
HETATM 16 C C1' THP . . . B 2 40.647 -29.758 -2.48 1 14.45 ? C1' THP 150 A 1 
HETATM 17 N N1 THP . . . B 2 40.616 -28.716 -3.529 1 16.91 ? N1 THP 150 A 1 
HETATM 18 C C2 THP . . . B 2 41.519 -28.766 -4.554 1 17.69 ? C2 THP 150 A 1 
HETATM 19 O O2 THP . . . B 2 42.301 -29.722 -4.636 1 19.05 ? O2 THP 150 A 1 
HETATM 20 N N3 THP . . . B 2 41.581 -27.807 -5.521 1 16.69 ? N3 THP 150 A 1 
HETATM 21 C C4 THP . . . B 2 40.785 -26.721 -5.458 1 14.42 ? C4 THP 150 A 1 
HETATM 22 O O4 THP . . . B 2 40.913 -25.822 -6.304 1 14.86 ? O4 THP 150 A 1 
HETATM 23 C C5 THP . . . B 2 39.846 -26.632 -4.382 1 13.19 ? C5 THP 150 A 1 
HETATM 24 C C5M THP . . . B 2 38.846 -25.529 -4.354 1 10.94 ? C5M THP 150 A 1 
HETATM 25 C C6 THP . . . B 2 39.736 -27.655 -3.431 1 15.43 ? C6 THP 150 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           25 
#