data_3OWY # _model_server_result.job_id 7WYcmXJ9RcY4AC9HQ5bTSA _model_server_result.datetime_utc '2024-11-28 02:53:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3owy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":200}' # _entry.id 3OWY # _exptl.entry_id 3OWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EQUILENIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.48 _cell.angle_gamma 90 _cell.entry_id 3OWY _cell.length_a 45.326 _cell.length_b 129.426 _cell.length_c 83.988 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,I,L,O,R 1 1 B,C,J,K,P,Q 2 1 E,H,M,N,S,V 3 1 F,G,T,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 104 A VAL 104 1_555 A N XCN 105 A XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C XCN 105 A XCN 105 1_555 A N ARG 106 A ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C VAL 104 B VAL 104 1_555 B N XCN 105 B XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C XCN 105 B XCN 105 1_555 B N ARG 106 B ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C VAL 104 C VAL 104 1_555 C N XCN 105 C XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C XCN 105 C XCN 105 1_555 C N ARG 106 C ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C VAL 104 D VAL 104 1_555 D N XCN 105 D XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C XCN 105 D XCN 105 1_555 D N ARG 106 D ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C VAL 104 E VAL 104 1_555 E N XCN 105 E XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C XCN 105 E XCN 105 1_555 E N ARG 106 E ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 F C VAL 104 F VAL 104 1_555 F N XCN 105 F XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 F C XCN 105 F XCN 105 1_555 F N ARG 106 F ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 G C VAL 104 G VAL 104 1_555 G N XCN 105 G XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 G C XCN 105 G XCN 105 1_555 G N ARG 106 G ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 H C VAL 104 H VAL 104 1_555 H N XCN 105 H XCN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 H C XCN 105 H XCN 105 1_555 H N ARG 106 H ARG 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C18 H18 O2' _chem_comp.formula_weight 266.334 _chem_comp.id EQU _chem_comp.mon_nstd_flag . _chem_comp.name EQUILENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EQU doub 83 n y C1 C6 EQU sing 84 n y C1 O1 EQU sing 85 n n C2 C3 EQU sing 86 n y C2 H2 EQU sing 87 n n C3 C4 EQU doub 88 n y C3 C10 EQU sing 89 n y C4 C5 EQU sing 90 n y C4 C13 EQU sing 91 n y C5 C6 EQU doub 92 n y C5 H5 EQU sing 93 n n C6 H6 EQU sing 94 n n C10 C11 EQU doub 95 n y C10 H10 EQU sing 96 n n C11 C12 EQU sing 97 n y C11 H11 EQU sing 98 n n C12 C13 EQU doub 99 n y C12 C16 EQU sing 100 n n C13 C19 EQU sing 101 n n C16 C17 EQU sing 102 n n C16 C24 EQU sing 103 n n C16 H16 EQU sing 104 n n C17 C18 EQU sing 105 n n C17 C26 EQU sing 106 n n C17 C27 EQU sing 107 n n C18 C19 EQU sing 108 n n C18 H181 EQU sing 109 n n C18 H182 EQU sing 110 n n C19 H191 EQU sing 111 n n C19 H192 EQU sing 112 n n C24 C25 EQU sing 113 n n C24 H241 EQU sing 114 n n C24 H242 EQU sing 115 n n C25 C26 EQU sing 116 n n C25 H251 EQU sing 117 n n C25 H252 EQU sing 118 n n C26 O26 EQU doub 119 n n C27 H271 EQU sing 120 n n C27 H272 EQU sing 121 n n C27 H273 EQU sing 122 n n O1 HO1 EQU sing 123 n n # _atom_sites.entry_id 3OWY _atom_sites.fract_transf_matrix[1][1] 0.022062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002505 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 EQU A 1 200 200 EQU EQU . J 2 EQU B 1 200 200 EQU EQU . K 2 EQU C 1 200 200 EQU EQU . L 2 EQU D 1 200 200 EQU EQU . M 2 EQU E 1 200 200 EQU EQU . N 2 EQU H 1 200 200 EQU EQU . O 3 HOH A 1 132 5 HOH HOH . O 3 HOH A 2 133 24 HOH HOH . O 3 HOH A 3 134 134 HOH HOH . O 3 HOH A 4 135 45 HOH HOH . O 3 HOH A 5 136 59 HOH HOH . O 3 HOH A 6 137 72 HOH HOH . O 3 HOH A 7 138 81 HOH HOH . O 3 HOH A 8 139 86 HOH HOH . O 3 HOH A 9 140 90 HOH HOH . O 3 HOH A 10 163 163 HOH HOH . O 3 HOH A 11 169 169 HOH HOH . O 3 HOH A 12 170 170 HOH HOH . P 3 HOH B 1 132 6 HOH HOH . P 3 HOH B 2 133 23 HOH HOH . P 3 HOH B 3 134 31 HOH HOH . P 3 HOH B 4 135 42 HOH HOH . P 3 HOH B 5 136 76 HOH HOH . P 3 HOH B 6 137 79 HOH HOH . P 3 HOH B 7 138 138 HOH HOH . P 3 HOH B 8 139 139 HOH HOH . P 3 HOH B 9 140 87 HOH HOH . P 3 HOH B 10 141 92 HOH HOH . P 3 HOH B 11 142 104 HOH HOH . P 3 HOH B 12 143 105 HOH HOH . P 3 HOH B 13 145 145 HOH HOH . P 3 HOH B 14 165 165 HOH HOH . P 3 HOH B 15 166 166 HOH HOH . Q 3 HOH C 1 132 19 HOH HOH . Q 3 HOH C 2 133 20 HOH HOH . Q 3 HOH C 3 134 27 HOH HOH . Q 3 HOH C 4 135 30 HOH HOH . Q 3 HOH C 5 136 36 HOH HOH . Q 3 HOH C 6 137 44 HOH HOH . Q 3 HOH C 7 138 50 HOH HOH . Q 3 HOH C 8 139 55 HOH HOH . Q 3 HOH C 9 140 93 HOH HOH . Q 3 HOH C 10 141 95 HOH HOH . Q 3 HOH C 11 142 100 HOH HOH . Q 3 HOH C 12 143 112 HOH HOH . Q 3 HOH C 13 144 113 HOH HOH . Q 3 HOH C 14 145 117 HOH HOH . Q 3 HOH C 15 146 119 HOH HOH . Q 3 HOH C 16 147 129 HOH HOH . Q 3 HOH C 17 149 149 HOH HOH . Q 3 HOH C 18 151 151 HOH HOH . Q 3 HOH C 19 171 171 HOH HOH . R 3 HOH D 1 132 8 HOH HOH . R 3 HOH D 2 133 10 HOH HOH . R 3 HOH D 3 134 18 HOH HOH . R 3 HOH D 4 135 29 HOH HOH . R 3 HOH D 5 136 41 HOH HOH . R 3 HOH D 6 137 137 HOH HOH . R 3 HOH D 7 138 53 HOH HOH . R 3 HOH D 8 139 57 HOH HOH . R 3 HOH D 9 140 61 HOH HOH . R 3 HOH D 10 141 66 HOH HOH . R 3 HOH D 11 142 70 HOH HOH . R 3 HOH D 12 143 143 HOH HOH . R 3 HOH D 13 144 78 HOH HOH . R 3 HOH D 14 145 85 HOH HOH . R 3 HOH D 15 146 94 HOH HOH . R 3 HOH D 16 147 102 HOH HOH . R 3 HOH D 17 148 106 HOH HOH . R 3 HOH D 18 149 111 HOH HOH . R 3 HOH D 19 150 126 HOH HOH . R 3 HOH D 20 151 128 HOH HOH . R 3 HOH D 21 161 161 HOH HOH . R 3 HOH D 22 162 162 HOH HOH . S 3 HOH E 1 132 9 HOH HOH . S 3 HOH E 2 133 12 HOH HOH . S 3 HOH E 3 134 15 HOH HOH . S 3 HOH E 4 135 28 HOH HOH . S 3 HOH E 5 136 136 HOH HOH . S 3 HOH E 6 137 39 HOH HOH . S 3 HOH E 7 138 43 HOH HOH . S 3 HOH E 8 139 62 HOH HOH . S 3 HOH E 9 140 82 HOH HOH . S 3 HOH E 10 141 141 HOH HOH . S 3 HOH E 11 142 89 HOH HOH . S 3 HOH E 12 143 109 HOH HOH . S 3 HOH E 13 144 122 HOH HOH . S 3 HOH E 14 145 125 HOH HOH . S 3 HOH E 15 146 146 HOH HOH . S 3 HOH E 16 172 172 HOH HOH . T 3 HOH F 1 132 16 HOH HOH . T 3 HOH F 2 133 26 HOH HOH . T 3 HOH F 3 134 33 HOH HOH . T 3 HOH F 4 135 49 HOH HOH . T 3 HOH F 5 136 54 HOH HOH . T 3 HOH F 6 137 68 HOH HOH . T 3 HOH F 7 138 74 HOH HOH . T 3 HOH F 8 139 75 HOH HOH . T 3 HOH F 9 140 84 HOH HOH . T 3 HOH F 10 141 99 HOH HOH . T 3 HOH F 11 142 103 HOH HOH . T 3 HOH F 12 143 114 HOH HOH . T 3 HOH F 13 144 116 HOH HOH . T 3 HOH F 14 147 147 HOH HOH . T 3 HOH F 15 152 152 HOH HOH . T 3 HOH F 16 154 154 HOH HOH . U 3 HOH G 1 132 4 HOH HOH . U 3 HOH G 2 133 13 HOH HOH . U 3 HOH G 3 134 37 HOH HOH . U 3 HOH G 4 135 46 HOH HOH . U 3 HOH G 5 136 47 HOH HOH . U 3 HOH G 6 137 51 HOH HOH . U 3 HOH G 7 138 77 HOH HOH . U 3 HOH G 8 139 108 HOH HOH . U 3 HOH G 9 140 124 HOH HOH . U 3 HOH G 10 141 127 HOH HOH . U 3 HOH G 11 142 130 HOH HOH . U 3 HOH G 12 148 148 HOH HOH . U 3 HOH G 13 157 157 HOH HOH . U 3 HOH G 14 159 159 HOH HOH . U 3 HOH G 15 164 164 HOH HOH . U 3 HOH G 16 167 167 HOH HOH . U 3 HOH G 17 168 168 HOH HOH . V 3 HOH H 1 132 21 HOH HOH . V 3 HOH H 2 133 32 HOH HOH . V 3 HOH H 3 134 34 HOH HOH . V 3 HOH H 4 135 64 HOH HOH . V 3 HOH H 5 136 65 HOH HOH . V 3 HOH H 6 137 71 HOH HOH . V 3 HOH H 7 138 73 HOH HOH . V 3 HOH H 8 139 80 HOH HOH . V 3 HOH H 9 140 107 HOH HOH . V 3 HOH H 10 141 115 HOH HOH . V 3 HOH H 11 142 120 HOH HOH . V 3 HOH H 12 143 121 HOH HOH . V 3 HOH H 13 144 144 HOH HOH . V 3 HOH H 14 145 123 HOH HOH . V 3 HOH H 15 150 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EQU . . . I 2 21.539 5.638 9.046 1 40.79 ? C1 EQU 200 A 1 HETATM 2 C C2 EQU . . . I 2 22.064 5.181 7.834 1 44.95 ? C2 EQU 200 A 1 HETATM 3 C C3 EQU . . . I 2 22.997 4.145 7.826 1 43.48 ? C3 EQU 200 A 1 HETATM 4 C C4 EQU . . . I 2 23.401 3.561 9.132 1 44.96 ? C4 EQU 200 A 1 HETATM 5 C C5 EQU . . . I 2 22.859 4.043 10.315 1 42.37 ? C5 EQU 200 A 1 HETATM 6 C C6 EQU . . . I 2 21.932 5.08 10.262 1 45.97 ? C6 EQU 200 A 1 HETATM 7 C C10 EQU . . . I 2 23.543 3.656 6.633 1 37.2 ? C10 EQU 200 A 1 HETATM 8 C C11 EQU . . . I 2 24.477 2.618 6.627 1 38.68 ? C11 EQU 200 A 1 HETATM 9 C C12 EQU . . . I 2 24.904 2.019 7.812 1 43.15 ? C12 EQU 200 A 1 HETATM 10 C C13 EQU . . . I 2 24.389 2.461 9.132 1 41.32 ? C13 EQU 200 A 1 HETATM 11 C C16 EQU . . . I 2 25.88 0.921 7.838 1 55.14 ? C16 EQU 200 A 1 HETATM 12 C C17 EQU . . . I 2 25.374 -0.084 8.856 1 57.97 ? C17 EQU 200 A 1 HETATM 13 C C18 EQU . . . I 2 25.545 0.474 10.261 1 51.79 ? C18 EQU 200 A 1 HETATM 14 C C19 EQU . . . I 2 24.833 1.827 10.443 1 42.01 ? C19 EQU 200 A 1 HETATM 15 C C24 EQU . . . I 2 26.025 0.122 6.546 1 59.24 ? C24 EQU 200 A 1 HETATM 16 C C25 EQU . . . I 2 26.516 -1.26 7.012 1 64.92 ? C25 EQU 200 A 1 HETATM 17 C C26 EQU . . . I 2 26.222 -1.265 8.498 1 63.82 ? C26 EQU 200 A 1 HETATM 18 C C27 EQU . . . I 2 23.929 -0.479 8.582 1 66.09 ? C27 EQU 200 A 1 HETATM 19 O O1 EQU . . . I 2 20.631 6.652 9.05 1 27.7 ? O1 EQU 200 A 1 HETATM 20 O O26 EQU . . . I 2 26.896 -1.885 9.311 1 65.97 ? O26 EQU 200 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 626 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #