data_3OXH # _model_server_result.job_id lB8etaDURr3dsZu_xR9xKw _model_server_result.datetime_utc '2024-11-08 04:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 3OXH # _exptl.entry_id 3OXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.146 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description Xylitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OXH _cell.length_a 81.597 _cell.length_b 81.981 _cell.length_c 36.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 10 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id -11 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id HG _struct_conn.ptnr2_label_comp_id PMB _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PMB _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.06 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H12 O5' _chem_comp.formula_weight 152.146 _chem_comp.id XYL _chem_comp.mon_nstd_flag . _chem_comp.name Xylitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-Xylitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XYL sing 392 n n C1 O1 XYL sing 393 n n C1 H11 XYL sing 394 n n C1 H12 XYL sing 395 n n C2 C3 XYL sing 396 n n C2 O2 XYL sing 397 n n C2 H2 XYL sing 398 n n C3 C4 XYL sing 399 n n C3 O3 XYL sing 400 n n C3 H3 XYL sing 401 n n C4 C5 XYL sing 402 n n C4 O4 XYL sing 403 n n C4 H4 XYL sing 404 n n C5 O5 XYL sing 405 n n C5 H51 XYL sing 406 n n C5 H52 XYL sing 407 n n O1 HO1 XYL sing 408 n n O2 HO2 XYL sing 409 n n O3 HO3 XYL sing 410 n n O4 HO4 XYL sing 411 n n O5 HO5 XYL sing 412 n n # _atom_sites.entry_id 3OXH _atom_sites.fract_transf_matrix[1][1] 0.012255 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 303 303 CL CL . C 2 CL A 1 304 304 CL CL . D 3 PMB A 1 301 301 PMB PMB . E 4 XYL A 1 302 302 XYL XYL . F 5 HOH A 1 262 262 HOH HOH . F 5 HOH A 2 263 263 HOH HOH . F 5 HOH A 3 264 264 HOH HOH . F 5 HOH A 4 265 265 HOH HOH . F 5 HOH A 5 266 266 HOH HOH . F 5 HOH A 6 267 267 HOH HOH . F 5 HOH A 7 268 268 HOH HOH . F 5 HOH A 8 269 269 HOH HOH . F 5 HOH A 9 270 270 HOH HOH . F 5 HOH A 10 271 271 HOH HOH . F 5 HOH A 11 272 1 HOH HOH . F 5 HOH A 12 273 2 HOH HOH . F 5 HOH A 13 274 3 HOH HOH . F 5 HOH A 14 275 4 HOH HOH . F 5 HOH A 15 276 5 HOH HOH . F 5 HOH A 16 277 6 HOH HOH . F 5 HOH A 17 278 7 HOH HOH . F 5 HOH A 18 279 8 HOH HOH . F 5 HOH A 19 280 9 HOH HOH . F 5 HOH A 20 281 10 HOH HOH . F 5 HOH A 21 282 11 HOH HOH . F 5 HOH A 22 283 12 HOH HOH . F 5 HOH A 23 284 13 HOH HOH . F 5 HOH A 24 285 14 HOH HOH . F 5 HOH A 25 286 15 HOH HOH . F 5 HOH A 26 287 16 HOH HOH . F 5 HOH A 27 288 17 HOH HOH . F 5 HOH A 28 289 18 HOH HOH . F 5 HOH A 29 290 19 HOH HOH . F 5 HOH A 30 291 20 HOH HOH . F 5 HOH A 31 292 21 HOH HOH . F 5 HOH A 32 293 22 HOH HOH . F 5 HOH A 33 294 23 HOH HOH . F 5 HOH A 34 295 24 HOH HOH . F 5 HOH A 35 296 25 HOH HOH . F 5 HOH A 36 297 26 HOH HOH . F 5 HOH A 37 298 27 HOH HOH . F 5 HOH A 38 299 28 HOH HOH . F 5 HOH A 39 300 29 HOH HOH . F 5 HOH A 40 305 30 HOH HOH . F 5 HOH A 41 306 31 HOH HOH . F 5 HOH A 42 307 32 HOH HOH . F 5 HOH A 43 308 33 HOH HOH . F 5 HOH A 44 309 34 HOH HOH . F 5 HOH A 45 310 35 HOH HOH . F 5 HOH A 46 311 36 HOH HOH . F 5 HOH A 47 312 37 HOH HOH . F 5 HOH A 48 313 38 HOH HOH . F 5 HOH A 49 314 39 HOH HOH . F 5 HOH A 50 315 40 HOH HOH . F 5 HOH A 51 316 41 HOH HOH . F 5 HOH A 52 317 42 HOH HOH . F 5 HOH A 53 318 43 HOH HOH . F 5 HOH A 54 319 44 HOH HOH . F 5 HOH A 55 320 45 HOH HOH . F 5 HOH A 56 321 46 HOH HOH . F 5 HOH A 57 322 47 HOH HOH . F 5 HOH A 58 323 48 HOH HOH . F 5 HOH A 59 324 49 HOH HOH . F 5 HOH A 60 325 50 HOH HOH . F 5 HOH A 61 326 51 HOH HOH . F 5 HOH A 62 327 52 HOH HOH . F 5 HOH A 63 328 53 HOH HOH . F 5 HOH A 64 329 54 HOH HOH . F 5 HOH A 65 330 55 HOH HOH . F 5 HOH A 66 331 56 HOH HOH . F 5 HOH A 67 332 57 HOH HOH . F 5 HOH A 68 333 58 HOH HOH . F 5 HOH A 69 334 59 HOH HOH . F 5 HOH A 70 335 60 HOH HOH . F 5 HOH A 71 336 61 HOH HOH . F 5 HOH A 72 337 62 HOH HOH . F 5 HOH A 73 338 63 HOH HOH . F 5 HOH A 74 339 64 HOH HOH . F 5 HOH A 75 340 65 HOH HOH . F 5 HOH A 76 341 66 HOH HOH . F 5 HOH A 77 342 67 HOH HOH . F 5 HOH A 78 343 68 HOH HOH . F 5 HOH A 79 344 69 HOH HOH . F 5 HOH A 80 345 70 HOH HOH . F 5 HOH A 81 346 71 HOH HOH . F 5 HOH A 82 347 72 HOH HOH . F 5 HOH A 83 348 73 HOH HOH . F 5 HOH A 84 349 74 HOH HOH . F 5 HOH A 85 350 75 HOH HOH . F 5 HOH A 86 351 76 HOH HOH . F 5 HOH A 87 352 77 HOH HOH . F 5 HOH A 88 353 78 HOH HOH . F 5 HOH A 89 354 79 HOH HOH . F 5 HOH A 90 355 80 HOH HOH . F 5 HOH A 91 356 81 HOH HOH . F 5 HOH A 92 357 82 HOH HOH . F 5 HOH A 93 358 83 HOH HOH . F 5 HOH A 94 359 84 HOH HOH . F 5 HOH A 95 360 85 HOH HOH . F 5 HOH A 96 361 86 HOH HOH . F 5 HOH A 97 362 87 HOH HOH . F 5 HOH A 98 363 88 HOH HOH . F 5 HOH A 99 364 89 HOH HOH . F 5 HOH A 100 365 90 HOH HOH . F 5 HOH A 101 366 91 HOH HOH . F 5 HOH A 102 367 92 HOH HOH . F 5 HOH A 103 368 93 HOH HOH . F 5 HOH A 104 369 94 HOH HOH . F 5 HOH A 105 370 95 HOH HOH . F 5 HOH A 106 371 96 HOH HOH . F 5 HOH A 107 372 97 HOH HOH . F 5 HOH A 108 373 98 HOH HOH . F 5 HOH A 109 374 99 HOH HOH . F 5 HOH A 110 375 100 HOH HOH . F 5 HOH A 111 376 101 HOH HOH . F 5 HOH A 112 377 102 HOH HOH . F 5 HOH A 113 378 103 HOH HOH . F 5 HOH A 114 379 104 HOH HOH . F 5 HOH A 115 380 105 HOH HOH . F 5 HOH A 116 381 106 HOH HOH . F 5 HOH A 117 382 107 HOH HOH . F 5 HOH A 118 383 108 HOH HOH . F 5 HOH A 119 384 109 HOH HOH . F 5 HOH A 120 385 110 HOH HOH . F 5 HOH A 121 386 111 HOH HOH . F 5 HOH A 122 387 112 HOH HOH . F 5 HOH A 123 388 113 HOH HOH . F 5 HOH A 124 389 114 HOH HOH . F 5 HOH A 125 390 115 HOH HOH . F 5 HOH A 126 391 116 HOH HOH . F 5 HOH A 127 392 117 HOH HOH . F 5 HOH A 128 393 118 HOH HOH . F 5 HOH A 129 394 119 HOH HOH . F 5 HOH A 130 395 120 HOH HOH . F 5 HOH A 131 396 121 HOH HOH . F 5 HOH A 132 397 122 HOH HOH . F 5 HOH A 133 398 123 HOH HOH . F 5 HOH A 134 399 124 HOH HOH . F 5 HOH A 135 400 125 HOH HOH . F 5 HOH A 136 401 126 HOH HOH . F 5 HOH A 137 402 127 HOH HOH . F 5 HOH A 138 403 128 HOH HOH . F 5 HOH A 139 404 129 HOH HOH . F 5 HOH A 140 405 130 HOH HOH . F 5 HOH A 141 406 131 HOH HOH . F 5 HOH A 142 407 132 HOH HOH . F 5 HOH A 143 408 133 HOH HOH . F 5 HOH A 144 409 134 HOH HOH . F 5 HOH A 145 410 135 HOH HOH . F 5 HOH A 146 411 136 HOH HOH . F 5 HOH A 147 412 137 HOH HOH . F 5 HOH A 148 413 138 HOH HOH . F 5 HOH A 149 414 139 HOH HOH . F 5 HOH A 150 415 140 HOH HOH . F 5 HOH A 151 416 141 HOH HOH . F 5 HOH A 152 417 142 HOH HOH . F 5 HOH A 153 418 143 HOH HOH . F 5 HOH A 154 419 144 HOH HOH . F 5 HOH A 155 420 145 HOH HOH . F 5 HOH A 156 421 146 HOH HOH . F 5 HOH A 157 422 147 HOH HOH . F 5 HOH A 158 423 148 HOH HOH . F 5 HOH A 159 424 149 HOH HOH . F 5 HOH A 160 425 150 HOH HOH . F 5 HOH A 161 426 151 HOH HOH . F 5 HOH A 162 427 152 HOH HOH . F 5 HOH A 163 428 153 HOH HOH . F 5 HOH A 164 429 154 HOH HOH . F 5 HOH A 165 430 155 HOH HOH . F 5 HOH A 166 431 156 HOH HOH . F 5 HOH A 167 432 157 HOH HOH . F 5 HOH A 168 433 158 HOH HOH . F 5 HOH A 169 434 159 HOH HOH . F 5 HOH A 170 435 160 HOH HOH . F 5 HOH A 171 436 161 HOH HOH . F 5 HOH A 172 437 162 HOH HOH . F 5 HOH A 173 438 163 HOH HOH . F 5 HOH A 174 439 164 HOH HOH . F 5 HOH A 175 440 165 HOH HOH . F 5 HOH A 176 441 166 HOH HOH . F 5 HOH A 177 442 167 HOH HOH . F 5 HOH A 178 443 168 HOH HOH . F 5 HOH A 179 444 169 HOH HOH . F 5 HOH A 180 445 170 HOH HOH . F 5 HOH A 181 446 171 HOH HOH . F 5 HOH A 182 447 172 HOH HOH . F 5 HOH A 183 448 173 HOH HOH . F 5 HOH A 184 449 174 HOH HOH . F 5 HOH A 185 450 175 HOH HOH . F 5 HOH A 186 451 176 HOH HOH . F 5 HOH A 187 452 177 HOH HOH . F 5 HOH A 188 453 178 HOH HOH . F 5 HOH A 189 454 179 HOH HOH . F 5 HOH A 190 455 180 HOH HOH . F 5 HOH A 191 456 181 HOH HOH . F 5 HOH A 192 457 182 HOH HOH . F 5 HOH A 193 458 183 HOH HOH . F 5 HOH A 194 459 184 HOH HOH . F 5 HOH A 195 460 185 HOH HOH . F 5 HOH A 196 461 186 HOH HOH . F 5 HOH A 197 462 187 HOH HOH . F 5 HOH A 198 463 188 HOH HOH . F 5 HOH A 199 464 189 HOH HOH . F 5 HOH A 200 465 190 HOH HOH . F 5 HOH A 201 466 191 HOH HOH . F 5 HOH A 202 467 192 HOH HOH . F 5 HOH A 203 468 193 HOH HOH . F 5 HOH A 204 469 194 HOH HOH . F 5 HOH A 205 470 195 HOH HOH . F 5 HOH A 206 471 196 HOH HOH . F 5 HOH A 207 472 197 HOH HOH . F 5 HOH A 208 473 198 HOH HOH . F 5 HOH A 209 474 199 HOH HOH . F 5 HOH A 210 475 200 HOH HOH . F 5 HOH A 211 476 201 HOH HOH . F 5 HOH A 212 477 202 HOH HOH . F 5 HOH A 213 478 203 HOH HOH . F 5 HOH A 214 479 204 HOH HOH . F 5 HOH A 215 480 205 HOH HOH . F 5 HOH A 216 481 206 HOH HOH . F 5 HOH A 217 482 207 HOH HOH . F 5 HOH A 218 483 208 HOH HOH . F 5 HOH A 219 484 209 HOH HOH . F 5 HOH A 220 485 210 HOH HOH . F 5 HOH A 221 486 211 HOH HOH . F 5 HOH A 222 487 212 HOH HOH . F 5 HOH A 223 488 213 HOH HOH . F 5 HOH A 224 489 214 HOH HOH . F 5 HOH A 225 490 215 HOH HOH . F 5 HOH A 226 491 216 HOH HOH . F 5 HOH A 227 492 217 HOH HOH . F 5 HOH A 228 493 218 HOH HOH . F 5 HOH A 229 494 219 HOH HOH . F 5 HOH A 230 495 220 HOH HOH . F 5 HOH A 231 496 221 HOH HOH . F 5 HOH A 232 497 222 HOH HOH . F 5 HOH A 233 498 223 HOH HOH . F 5 HOH A 234 499 224 HOH HOH . F 5 HOH A 235 500 225 HOH HOH . F 5 HOH A 236 501 226 HOH HOH . F 5 HOH A 237 502 227 HOH HOH . F 5 HOH A 238 503 228 HOH HOH . F 5 HOH A 239 504 229 HOH HOH . F 5 HOH A 240 505 230 HOH HOH . F 5 HOH A 241 506 231 HOH HOH . F 5 HOH A 242 507 232 HOH HOH . F 5 HOH A 243 508 233 HOH HOH . F 5 HOH A 244 509 234 HOH HOH . F 5 HOH A 245 510 235 HOH HOH . F 5 HOH A 246 511 236 HOH HOH . F 5 HOH A 247 512 237 HOH HOH . F 5 HOH A 248 513 238 HOH HOH . F 5 HOH A 249 514 239 HOH HOH . F 5 HOH A 250 515 240 HOH HOH . F 5 HOH A 251 516 241 HOH HOH . F 5 HOH A 252 517 242 HOH HOH . F 5 HOH A 253 518 243 HOH HOH . F 5 HOH A 254 519 244 HOH HOH . F 5 HOH A 255 520 245 HOH HOH . F 5 HOH A 256 521 246 HOH HOH . F 5 HOH A 257 522 247 HOH HOH . F 5 HOH A 258 523 248 HOH HOH . F 5 HOH A 259 524 249 HOH HOH . F 5 HOH A 260 525 250 HOH HOH . F 5 HOH A 261 526 251 HOH HOH . F 5 HOH A 262 527 252 HOH HOH . F 5 HOH A 263 528 253 HOH HOH . F 5 HOH A 264 529 254 HOH HOH . F 5 HOH A 265 530 255 HOH HOH . F 5 HOH A 266 531 256 HOH HOH . F 5 HOH A 267 532 257 HOH HOH . F 5 HOH A 268 533 258 HOH HOH . F 5 HOH A 269 534 259 HOH HOH . F 5 HOH A 270 535 260 HOH HOH . F 5 HOH A 271 536 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYL . . . E 4 19.567 25.27 -1.211 1 21.62 ? C1 XYL 302 A 1 HETATM 2 C C2 XYL . . . E 4 19.083 24.447 -0.004 1 22.83 ? C2 XYL 302 A 1 HETATM 3 C C3 XYL . . . E 4 17.579 24.643 0.237 1 24.08 ? C3 XYL 302 A 1 HETATM 4 C C4 XYL . . . E 4 17.096 23.843 1.448 1 22.52 ? C4 XYL 302 A 1 HETATM 5 C C5 XYL . . . E 4 17.825 24.336 2.707 1 23.21 ? C5 XYL 302 A 1 HETATM 6 O O1 XYL . . . E 4 19.343 26.647 -0.997 1 22.39 ? O1 XYL 302 A 1 HETATM 7 O O2 XYL . . . E 4 19.419 23.075 -0.251 1 24 ? O2 XYL 302 A 1 HETATM 8 O O3 XYL . . . E 4 16.813 24.232 -0.904 1 25.48 ? O3 XYL 302 A 1 HETATM 9 O O4 XYL . . . E 4 15.689 24.053 1.633 1 22.41 ? O4 XYL 302 A 1 HETATM 10 O O5 XYL . . . E 4 17.198 23.723 3.833 1 19.72 ? O5 XYL 302 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #