data_3OXI
#
_model_server_result.job_id            vr3uwGUm_Xeik0BMiarkow 
_model_server_result.datetime_utc      '2024-10-12 13:20:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oxi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3OXI 
#
_exptl.entry_id    3OXI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              281.351 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 3-[(thiophen-2-ylacetyl)amino]thiophene-2-carboxylate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OXI 
_cell.length_a            60.02 
_cell.length_b            78.081 
_cell.length_c            83.514 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OXI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H11 N O3 S2' 
_chem_comp.formula_weight    281.351 
_chem_comp.id                SYY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 3-[(thiophen-2-ylacetyl)amino]thiophene-2-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S C3 SYY sing 290 n y 
S C5 SYY sing 291 n y 
C1 C2 SYY sing 292 n y 
C1 C5 SYY doub 293 n y 
N1 C2 SYY sing 294 n n 
N1 C11 SYY sing 295 n n 
O1 C6 SYY doub 296 n n 
C2 C3 SYY doub 297 n y 
O2 C6 SYY sing 298 n n 
O2 C9 SYY sing 299 n n 
S2 C14 SYY sing 300 n y 
S2 C17 SYY sing 301 n y 
C3 C6 SYY sing 302 n n 
O3 C11 SYY doub 303 n n 
C11 C12 SYY sing 304 n n 
C12 C14 SYY sing 305 n n 
C14 C15 SYY doub 306 n y 
C15 C16 SYY sing 307 n y 
C16 C17 SYY doub 308 n y 
C1 H1 SYY sing 309 n n 
N1 HN1 SYY sing 310 n n 
C5 H5 SYY sing 311 n n 
C9 H9 SYY sing 312 n n 
C9 H9A SYY sing 313 n n 
C9 H9B SYY sing 314 n n 
C12 H12 SYY sing 315 n n 
C12 H12A SYY sing 316 n n 
C15 H15 SYY sing 317 n n 
C16 H16 SYY sing 318 n n 
C17 H17 SYY sing 319 n n 
#
_atom_sites.entry_id                     3OXI 
_atom_sites.fract_transf_matrix[1][1]    0.016661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012807 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SYY A 1 1 1 SYY SYY . 
D 4 HOH A 1 2 2 HOH HOH . 
D 4 HOH A 2 3 3 HOH HOH . 
D 4 HOH A 3 4 4 HOH HOH . 
D 4 HOH A 4 5 5 HOH HOH . 
D 4 HOH A 5 6 6 HOH HOH . 
D 4 HOH A 6 7 7 HOH HOH . 
D 4 HOH A 7 8 8 HOH HOH . 
D 4 HOH A 8 9 9 HOH HOH . 
D 4 HOH A 9 10 10 HOH HOH . 
D 4 HOH A 10 11 11 HOH HOH . 
D 4 HOH A 11 12 12 HOH HOH . 
D 4 HOH A 12 13 13 HOH HOH . 
D 4 HOH A 13 14 14 HOH HOH . 
D 4 HOH A 14 15 15 HOH HOH . 
D 4 HOH A 15 16 16 HOH HOH . 
D 4 HOH A 16 17 17 HOH HOH . 
D 4 HOH A 17 18 18 HOH HOH . 
D 4 HOH A 18 19 19 HOH HOH . 
D 4 HOH A 19 20 20 HOH HOH . 
D 4 HOH A 20 22 22 HOH HOH . 
D 4 HOH A 21 23 23 HOH HOH . 
D 4 HOH A 22 24 24 HOH HOH . 
D 4 HOH A 23 25 25 HOH HOH . 
D 4 HOH A 24 26 26 HOH HOH . 
D 4 HOH A 25 27 27 HOH HOH . 
D 4 HOH A 26 28 28 HOH HOH . 
D 4 HOH A 27 29 29 HOH HOH . 
D 4 HOH A 28 30 30 HOH HOH . 
D 4 HOH A 29 31 31 HOH HOH . 
D 4 HOH A 30 32 32 HOH HOH . 
D 4 HOH A 31 33 33 HOH HOH . 
D 4 HOH A 32 34 34 HOH HOH . 
D 4 HOH A 33 35 35 HOH HOH . 
D 4 HOH A 34 36 36 HOH HOH . 
D 4 HOH A 35 37 37 HOH HOH . 
D 4 HOH A 36 38 38 HOH HOH . 
D 4 HOH A 37 39 39 HOH HOH . 
D 4 HOH A 38 402 1 HOH HOH . 
D 4 HOH A 39 403 40 HOH HOH . 
D 4 HOH A 40 404 41 HOH HOH . 
D 4 HOH A 41 405 42 HOH HOH . 
D 4 HOH A 42 406 43 HOH HOH . 
D 4 HOH A 43 407 44 HOH HOH . 
D 4 HOH A 44 408 45 HOH HOH . 
D 4 HOH A 45 409 46 HOH HOH . 
D 4 HOH A 46 410 47 HOH HOH . 
D 4 HOH A 47 411 48 HOH HOH . 
D 4 HOH A 48 412 50 HOH HOH . 
D 4 HOH A 49 413 51 HOH HOH . 
D 4 HOH A 50 414 52 HOH HOH . 
D 4 HOH A 51 415 53 HOH HOH . 
D 4 HOH A 52 416 54 HOH HOH . 
D 4 HOH A 53 417 55 HOH HOH . 
D 4 HOH A 54 418 56 HOH HOH . 
D 4 HOH A 55 419 57 HOH HOH . 
D 4 HOH A 56 420 58 HOH HOH . 
D 4 HOH A 57 421 59 HOH HOH . 
D 4 HOH A 58 422 60 HOH HOH . 
D 4 HOH A 59 423 61 HOH HOH . 
D 4 HOH A 60 424 62 HOH HOH . 
D 4 HOH A 61 425 63 HOH HOH . 
D 4 HOH A 62 426 64 HOH HOH . 
D 4 HOH A 63 427 65 HOH HOH . 
D 4 HOH A 64 428 66 HOH HOH . 
D 4 HOH A 65 429 67 HOH HOH . 
D 4 HOH A 66 430 68 HOH HOH . 
D 4 HOH A 67 431 69 HOH HOH . 
D 4 HOH A 68 432 70 HOH HOH . 
D 4 HOH A 69 433 71 HOH HOH . 
D 4 HOH A 70 434 72 HOH HOH . 
D 4 HOH A 71 435 73 HOH HOH . 
D 4 HOH A 72 436 74 HOH HOH . 
D 4 HOH A 73 437 75 HOH HOH . 
D 4 HOH A 74 438 76 HOH HOH . 
D 4 HOH A 75 439 77 HOH HOH . 
D 4 HOH A 76 440 78 HOH HOH . 
D 4 HOH A 77 441 79 HOH HOH . 
D 4 HOH A 78 442 80 HOH HOH . 
D 4 HOH A 79 443 81 HOH HOH . 
D 4 HOH A 80 444 82 HOH HOH . 
D 4 HOH A 81 445 83 HOH HOH . 
D 4 HOH A 82 446 84 HOH HOH . 
E 4 HOH J 1 21 21 HOH HOH . 
E 4 HOH J 2 49 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SYY . . . C 3 1.816 -1.633 -29.346 1 46.44 ? S SYY 1 A 1 
HETATM 2 C C1 SYY . . . C 3 1.062 -2.806 -31.56 1 46.1 ? C1 SYY 1 A 1 
HETATM 3 N N1 SYY . . . C 3 -0.907 -1.311 -32.095 1 47.34 ? N1 SYY 1 A 1 
HETATM 4 O O1 SYY . . . C 3 -1.396 0.521 -30 1 51.33 ? O1 SYY 1 A 1 
HETATM 5 C C2 SYY . . . C 3 0.159 -1.748 -31.377 1 46.95 ? C2 SYY 1 A 1 
HETATM 6 O O2 SYY . . . C 3 0.206 1.035 -28.57 1 54.01 ? O2 SYY 1 A 1 
HETATM 7 S S2 SYY . . . C 3 -2.619 1.237 -34.224 1 55.26 ? S2 SYY 1 A 1 
HETATM 8 C C3 SYY . . . C 3 0.433 -0.971 -30.137 1 48.27 ? C3 SYY 1 A 1 
HETATM 9 O O3 SYY . . . C 3 -0.662 -2.949 -33.631 1 48.49 ? O3 SYY 1 A 1 
HETATM 10 C C5 SYY . . . C 3 2.01 -2.864 -30.545 1 46.89 ? C5 SYY 1 A 1 
HETATM 11 C C6 SYY . . . C 3 -0.301 0.201 -29.595 1 48.99 ? C6 SYY 1 A 1 
HETATM 12 C C9 SYY . . . C 3 -0.583 2.224 -28.394 1 56.34 ? C9 SYY 1 A 1 
HETATM 13 C C11 SYY . . . C 3 -1.256 -1.956 -33.211 1 49.56 ? C11 SYY 1 A 1 
HETATM 14 C C12 SYY . . . C 3 -2.454 -1.461 -33.977 1 50.31 ? C12 SYY 1 A 1 
HETATM 15 C C14 SYY . . . C 3 -3.056 -0.211 -33.402 1 52.06 ? C14 SYY 1 A 1 
HETATM 16 C C15 SYY . . . C 3 -3.913 0.082 -32.323 1 51.97 ? C15 SYY 1 A 1 
HETATM 17 C C16 SYY . . . C 3 -4.186 1.454 -32.198 1 51.45 ? C16 SYY 1 A 1 
HETATM 18 C C17 SYY . . . C 3 -3.562 2.228 -33.166 1 50.5 ? C17 SYY 1 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           18 
#