data_3OXX # _model_server_result.job_id IYkJPQsgRPeYc5D6Yd5FEw _model_server_result.datetime_utc '2024-10-19 12:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 3OXX # _exptl.entry_id 3OXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.88 _cell.angle_gamma 90 _cell.entry_id 3OXX _cell.length_a 51.238 _cell.length_b 58.489 _cell.length_c 62.118 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,W,X 1 1 C,D,N,O,P,Q,R,S,T,U,V,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 L N N ? 2 O N N ? 2 P N N ? 2 S N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 249 n n C1 C2 GOL sing 250 n n C1 H11 GOL sing 251 n n C1 H12 GOL sing 252 n n O1 HO1 GOL sing 253 n n C2 O2 GOL sing 254 n n C2 C3 GOL sing 255 n n C2 H2 GOL sing 256 n n O2 HO2 GOL sing 257 n n C3 O3 GOL sing 258 n n C3 H31 GOL sing 259 n n C3 H32 GOL sing 260 n n O3 HO3 GOL sing 261 n n # _atom_sites.entry_id 3OXX _atom_sites.fract_transf_matrix[1][1] 0.019517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL B 1 100 5 GOL GOL . F 2 GOL B 1 101 6 GOL GOL . G 3 EDO B 1 102 2 EDO EDO . H 4 ACT B 1 103 2 ACT ACT . I 4 ACT B 1 104 4 ACT ACT . J 4 ACT B 1 105 5 ACT ACT . K 5 DR7 A 1 100 100 DR7 DR7 . L 2 GOL A 1 101 3 GOL GOL . M 3 EDO A 1 102 1 EDO EDO . N 5 DR7 C 1 100 100 DR7 DR7 . O 2 GOL C 1 101 1 GOL GOL . P 2 GOL C 1 102 2 GOL GOL . Q 4 ACT C 1 103 1 ACT ACT . R 4 ACT C 1 104 3 ACT ACT . S 2 GOL D 1 100 4 GOL GOL . T 6 PO4 D 1 101 1 PO4 PO4 . U 4 ACT D 1 102 1 ACT ACT . V 3 EDO D 1 103 1 EDO EDO . W 7 HOH B 1 106 6 HOH HOH . W 7 HOH B 2 107 107 HOH HOH . W 7 HOH B 3 108 13 HOH HOH . W 7 HOH B 4 109 109 HOH HOH . W 7 HOH B 5 110 14 HOH HOH . W 7 HOH B 6 111 19 HOH HOH . W 7 HOH B 7 112 21 HOH HOH . W 7 HOH B 8 113 24 HOH HOH . W 7 HOH B 9 114 114 HOH HOH . W 7 HOH B 10 115 32 HOH HOH . W 7 HOH B 11 116 116 HOH HOH . W 7 HOH B 12 117 33 HOH HOH . W 7 HOH B 13 118 118 HOH HOH . W 7 HOH B 14 119 36 HOH HOH . W 7 HOH B 15 120 41 HOH HOH . W 7 HOH B 16 121 121 HOH HOH . W 7 HOH B 17 122 43 HOH HOH . W 7 HOH B 18 123 44 HOH HOH . W 7 HOH B 19 124 57 HOH HOH . W 7 HOH B 20 125 65 HOH HOH . W 7 HOH B 21 126 66 HOH HOH . W 7 HOH B 22 127 67 HOH HOH . W 7 HOH B 23 128 128 HOH HOH . W 7 HOH B 24 129 129 HOH HOH . W 7 HOH B 25 130 130 HOH HOH . W 7 HOH B 26 131 69 HOH HOH . W 7 HOH B 27 132 70 HOH HOH . W 7 HOH B 28 133 71 HOH HOH . W 7 HOH B 29 134 74 HOH HOH . W 7 HOH B 30 135 135 HOH HOH . W 7 HOH B 31 136 77 HOH HOH . W 7 HOH B 32 137 78 HOH HOH . W 7 HOH B 33 138 81 HOH HOH . W 7 HOH B 34 139 82 HOH HOH . W 7 HOH B 35 140 86 HOH HOH . W 7 HOH B 36 141 88 HOH HOH . W 7 HOH B 37 142 89 HOH HOH . W 7 HOH B 38 143 98 HOH HOH . W 7 HOH B 39 144 144 HOH HOH . W 7 HOH B 40 145 145 HOH HOH . W 7 HOH B 41 146 101 HOH HOH . W 7 HOH B 42 147 103 HOH HOH . X 7 HOH A 1 103 1 HOH HOH . X 7 HOH A 2 104 2 HOH HOH . X 7 HOH A 3 105 105 HOH HOH . X 7 HOH A 4 106 3 HOH HOH . X 7 HOH A 5 107 5 HOH HOH . X 7 HOH A 6 108 108 HOH HOH . X 7 HOH A 7 109 7 HOH HOH . X 7 HOH A 8 110 110 HOH HOH . X 7 HOH A 9 111 10 HOH HOH . X 7 HOH A 10 112 112 HOH HOH . X 7 HOH A 11 113 15 HOH HOH . X 7 HOH A 12 114 16 HOH HOH . X 7 HOH A 13 115 115 HOH HOH . X 7 HOH A 14 116 20 HOH HOH . X 7 HOH A 15 117 117 HOH HOH . X 7 HOH A 16 118 23 HOH HOH . X 7 HOH A 17 119 29 HOH HOH . X 7 HOH A 18 120 38 HOH HOH . X 7 HOH A 19 121 39 HOH HOH . X 7 HOH A 20 122 40 HOH HOH . X 7 HOH A 21 123 45 HOH HOH . X 7 HOH A 22 124 124 HOH HOH . X 7 HOH A 23 125 125 HOH HOH . X 7 HOH A 24 126 126 HOH HOH . X 7 HOH A 25 127 127 HOH HOH . X 7 HOH A 26 128 46 HOH HOH . X 7 HOH A 27 129 47 HOH HOH . X 7 HOH A 28 130 51 HOH HOH . X 7 HOH A 29 131 131 HOH HOH . X 7 HOH A 30 132 132 HOH HOH . X 7 HOH A 31 133 133 HOH HOH . X 7 HOH A 32 134 134 HOH HOH . X 7 HOH A 33 135 55 HOH HOH . X 7 HOH A 34 136 58 HOH HOH . X 7 HOH A 35 137 61 HOH HOH . X 7 HOH A 36 138 64 HOH HOH . X 7 HOH A 37 139 68 HOH HOH . X 7 HOH A 38 140 72 HOH HOH . X 7 HOH A 39 141 76 HOH HOH . X 7 HOH A 40 142 142 HOH HOH . X 7 HOH A 41 143 143 HOH HOH . X 7 HOH A 42 144 87 HOH HOH . X 7 HOH A 43 145 91 HOH HOH . X 7 HOH A 44 146 146 HOH HOH . X 7 HOH A 45 147 147 HOH HOH . X 7 HOH A 46 148 92 HOH HOH . X 7 HOH A 47 149 93 HOH HOH . X 7 HOH A 48 150 94 HOH HOH . X 7 HOH A 49 151 96 HOH HOH . X 7 HOH A 50 152 97 HOH HOH . X 7 HOH A 51 153 102 HOH HOH . Y 7 HOH C 1 105 4 HOH HOH . Y 7 HOH C 2 106 106 HOH HOH . Y 7 HOH C 3 107 8 HOH HOH . Y 7 HOH C 4 108 9 HOH HOH . Y 7 HOH C 5 109 11 HOH HOH . Y 7 HOH C 6 110 12 HOH HOH . Y 7 HOH C 7 111 111 HOH HOH . Y 7 HOH C 8 112 17 HOH HOH . Y 7 HOH C 9 113 113 HOH HOH . Y 7 HOH C 10 114 22 HOH HOH . Y 7 HOH C 11 115 26 HOH HOH . Y 7 HOH C 12 116 30 HOH HOH . Y 7 HOH C 13 117 31 HOH HOH . Y 7 HOH C 14 118 34 HOH HOH . Y 7 HOH C 15 119 35 HOH HOH . Y 7 HOH C 16 120 120 HOH HOH . Y 7 HOH C 17 121 37 HOH HOH . Y 7 HOH C 18 122 42 HOH HOH . Y 7 HOH C 19 123 123 HOH HOH . Y 7 HOH C 20 124 48 HOH HOH . Y 7 HOH C 21 125 52 HOH HOH . Y 7 HOH C 22 126 53 HOH HOH . Y 7 HOH C 23 127 54 HOH HOH . Y 7 HOH C 24 128 56 HOH HOH . Y 7 HOH C 25 129 59 HOH HOH . Y 7 HOH C 26 130 62 HOH HOH . Y 7 HOH C 27 131 63 HOH HOH . Y 7 HOH C 28 132 79 HOH HOH . Y 7 HOH C 29 133 83 HOH HOH . Y 7 HOH C 30 134 84 HOH HOH . Y 7 HOH C 31 135 104 HOH HOH . Y 7 HOH C 32 136 136 HOH HOH . Y 7 HOH C 33 137 137 HOH HOH . Y 7 HOH C 34 138 138 HOH HOH . Y 7 HOH C 35 148 148 HOH HOH . Y 7 HOH C 36 149 149 HOH HOH . Y 7 HOH C 37 150 150 HOH HOH . Z 7 HOH D 1 104 18 HOH HOH . Z 7 HOH D 2 106 27 HOH HOH . Z 7 HOH D 3 107 28 HOH HOH . Z 7 HOH D 4 108 49 HOH HOH . Z 7 HOH D 5 109 50 HOH HOH . Z 7 HOH D 6 110 60 HOH HOH . Z 7 HOH D 7 111 73 HOH HOH . Z 7 HOH D 8 112 75 HOH HOH . Z 7 HOH D 9 113 80 HOH HOH . Z 7 HOH D 10 114 85 HOH HOH . Z 7 HOH D 11 115 90 HOH HOH . Z 7 HOH D 12 116 95 HOH HOH . Z 7 HOH D 13 117 99 HOH HOH . Z 7 HOH D 14 118 100 HOH HOH . Z 7 HOH D 15 119 119 HOH HOH . Z 7 HOH D 16 120 25 HOH HOH . Z 7 HOH D 17 122 122 HOH HOH . Z 7 HOH D 18 140 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -3.281 14.315 41.139 1 50.84 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . F 2 -2.063 13.802 40.636 1 52.03 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . F 2 -4.298 14.449 40.012 1 49.44 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . F 2 -5.378 15.261 40.408 1 49.77 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . F 2 -4.844 13.084 39.633 1 47.52 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . F 2 -4.952 12.963 38.226 1 47.73 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #