data_3OY0
#
_model_server_result.job_id            ZvXhNgnhVnEyL6A-8Gu1Rg 
_model_server_result.datetime_utc      '2024-11-05 01:24:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oy0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    3OY0 
#
_exptl.entry_id    3OY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.15 
_cell.angle_gamma         90 
_cell.entry_id            3OY0 
_cell.length_a            42.235 
_cell.length_b            41.331 
_cell.length_c            72.028 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc4 B ZN ZN . A ZN 262 1_555 C NAE OY0 . A OY0 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     3OY0 
_atom_sites.fract_transf_matrix[1][1]    0.023677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00597 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014318 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 262 262 ZN ZN . 
C 3 OY0 A 1 263 1 OY0 OY0 . 
D 4 GOL A 1 400 400 GOL GOL . 
E 5 DMS A 1 3092 3092 DMS DMS . 
F 6 HOH A 1 126 126 HOH HOH . 
F 6 HOH A 2 264 1 HOH HOH . 
F 6 HOH A 3 265 2 HOH HOH . 
F 6 HOH A 4 266 3 HOH HOH . 
F 6 HOH A 5 267 4 HOH HOH . 
F 6 HOH A 6 268 5 HOH HOH . 
F 6 HOH A 7 269 6 HOH HOH . 
F 6 HOH A 8 270 7 HOH HOH . 
F 6 HOH A 9 271 8 HOH HOH . 
F 6 HOH A 10 272 9 HOH HOH . 
F 6 HOH A 11 273 10 HOH HOH . 
F 6 HOH A 12 274 11 HOH HOH . 
F 6 HOH A 13 275 12 HOH HOH . 
F 6 HOH A 14 276 13 HOH HOH . 
F 6 HOH A 15 277 14 HOH HOH . 
F 6 HOH A 16 278 15 HOH HOH . 
F 6 HOH A 17 279 16 HOH HOH . 
F 6 HOH A 18 280 17 HOH HOH . 
F 6 HOH A 19 281 18 HOH HOH . 
F 6 HOH A 20 282 19 HOH HOH . 
F 6 HOH A 21 283 20 HOH HOH . 
F 6 HOH A 22 284 21 HOH HOH . 
F 6 HOH A 23 285 22 HOH HOH . 
F 6 HOH A 24 286 23 HOH HOH . 
F 6 HOH A 25 287 24 HOH HOH . 
F 6 HOH A 26 288 26 HOH HOH . 
F 6 HOH A 27 289 27 HOH HOH . 
F 6 HOH A 28 290 28 HOH HOH . 
F 6 HOH A 29 291 29 HOH HOH . 
F 6 HOH A 30 292 30 HOH HOH . 
F 6 HOH A 31 293 31 HOH HOH . 
F 6 HOH A 32 294 32 HOH HOH . 
F 6 HOH A 33 295 33 HOH HOH . 
F 6 HOH A 34 296 34 HOH HOH . 
F 6 HOH A 35 297 35 HOH HOH . 
F 6 HOH A 36 298 36 HOH HOH . 
F 6 HOH A 37 299 37 HOH HOH . 
F 6 HOH A 38 300 38 HOH HOH . 
F 6 HOH A 39 301 39 HOH HOH . 
F 6 HOH A 40 302 40 HOH HOH . 
F 6 HOH A 41 303 41 HOH HOH . 
F 6 HOH A 42 304 42 HOH HOH . 
F 6 HOH A 43 305 43 HOH HOH . 
F 6 HOH A 44 306 44 HOH HOH . 
F 6 HOH A 45 307 45 HOH HOH . 
F 6 HOH A 46 308 46 HOH HOH . 
F 6 HOH A 47 309 47 HOH HOH . 
F 6 HOH A 48 310 48 HOH HOH . 
F 6 HOH A 49 311 49 HOH HOH . 
F 6 HOH A 50 312 50 HOH HOH . 
F 6 HOH A 51 313 51 HOH HOH . 
F 6 HOH A 52 314 52 HOH HOH . 
F 6 HOH A 53 315 53 HOH HOH . 
F 6 HOH A 54 316 54 HOH HOH . 
F 6 HOH A 55 317 55 HOH HOH . 
F 6 HOH A 56 318 56 HOH HOH . 
F 6 HOH A 57 319 57 HOH HOH . 
F 6 HOH A 58 320 58 HOH HOH . 
F 6 HOH A 59 321 59 HOH HOH . 
F 6 HOH A 60 322 60 HOH HOH . 
F 6 HOH A 61 323 61 HOH HOH . 
F 6 HOH A 62 324 62 HOH HOH . 
F 6 HOH A 63 325 63 HOH HOH . 
F 6 HOH A 64 326 64 HOH HOH . 
F 6 HOH A 65 327 65 HOH HOH . 
F 6 HOH A 66 328 66 HOH HOH . 
F 6 HOH A 67 329 67 HOH HOH . 
F 6 HOH A 68 330 68 HOH HOH . 
F 6 HOH A 69 331 69 HOH HOH . 
F 6 HOH A 70 332 70 HOH HOH . 
F 6 HOH A 71 333 71 HOH HOH . 
F 6 HOH A 72 334 72 HOH HOH . 
F 6 HOH A 73 335 73 HOH HOH . 
F 6 HOH A 74 336 74 HOH HOH . 
F 6 HOH A 75 337 75 HOH HOH . 
F 6 HOH A 76 338 77 HOH HOH . 
F 6 HOH A 77 339 78 HOH HOH . 
F 6 HOH A 78 340 79 HOH HOH . 
F 6 HOH A 79 341 80 HOH HOH . 
F 6 HOH A 80 342 81 HOH HOH . 
F 6 HOH A 81 343 82 HOH HOH . 
F 6 HOH A 82 344 83 HOH HOH . 
F 6 HOH A 83 345 84 HOH HOH . 
F 6 HOH A 84 346 86 HOH HOH . 
F 6 HOH A 85 347 87 HOH HOH . 
F 6 HOH A 86 348 88 HOH HOH . 
F 6 HOH A 87 349 89 HOH HOH . 
F 6 HOH A 88 350 90 HOH HOH . 
F 6 HOH A 89 351 91 HOH HOH . 
F 6 HOH A 90 352 92 HOH HOH . 
F 6 HOH A 91 353 93 HOH HOH . 
F 6 HOH A 92 354 94 HOH HOH . 
F 6 HOH A 93 355 95 HOH HOH . 
F 6 HOH A 94 356 96 HOH HOH . 
F 6 HOH A 95 357 97 HOH HOH . 
F 6 HOH A 96 358 98 HOH HOH . 
F 6 HOH A 97 359 99 HOH HOH . 
F 6 HOH A 98 360 100 HOH HOH . 
F 6 HOH A 99 361 101 HOH HOH . 
F 6 HOH A 100 362 102 HOH HOH . 
F 6 HOH A 101 363 103 HOH HOH . 
F 6 HOH A 102 364 104 HOH HOH . 
F 6 HOH A 103 365 105 HOH HOH . 
F 6 HOH A 104 366 106 HOH HOH . 
F 6 HOH A 105 367 107 HOH HOH . 
F 6 HOH A 106 368 108 HOH HOH . 
F 6 HOH A 107 369 109 HOH HOH . 
F 6 HOH A 108 370 110 HOH HOH . 
F 6 HOH A 109 371 111 HOH HOH . 
F 6 HOH A 110 372 112 HOH HOH . 
F 6 HOH A 111 373 113 HOH HOH . 
F 6 HOH A 112 374 114 HOH HOH . 
F 6 HOH A 113 375 115 HOH HOH . 
F 6 HOH A 114 376 116 HOH HOH . 
F 6 HOH A 115 377 117 HOH HOH . 
F 6 HOH A 116 378 118 HOH HOH . 
F 6 HOH A 117 379 119 HOH HOH . 
F 6 HOH A 118 380 120 HOH HOH . 
F 6 HOH A 119 381 121 HOH HOH . 
F 6 HOH A 120 382 122 HOH HOH . 
F 6 HOH A 121 383 123 HOH HOH . 
F 6 HOH A 122 384 124 HOH HOH . 
F 6 HOH A 123 385 125 HOH HOH . 
F 6 HOH A 124 386 127 HOH HOH . 
F 6 HOH A 125 387 128 HOH HOH . 
F 6 HOH A 126 388 129 HOH HOH . 
F 6 HOH A 127 389 130 HOH HOH . 
F 6 HOH A 128 390 131 HOH HOH . 
F 6 HOH A 129 391 132 HOH HOH . 
F 6 HOH A 130 392 133 HOH HOH . 
F 6 HOH A 131 393 134 HOH HOH . 
F 6 HOH A 132 394 135 HOH HOH . 
F 6 HOH A 133 395 136 HOH HOH . 
F 6 HOH A 134 396 137 HOH HOH . 
F 6 HOH A 135 397 138 HOH HOH . 
F 6 HOH A 136 398 139 HOH HOH . 
F 6 HOH A 137 399 140 HOH HOH . 
F 6 HOH A 138 401 141 HOH HOH . 
F 6 HOH A 139 402 142 HOH HOH . 
F 6 HOH A 140 403 143 HOH HOH . 
F 6 HOH A 141 404 144 HOH HOH . 
F 6 HOH A 142 405 145 HOH HOH . 
F 6 HOH A 143 406 146 HOH HOH . 
F 6 HOH A 144 407 147 HOH HOH . 
F 6 HOH A 145 408 148 HOH HOH . 
F 6 HOH A 146 409 149 HOH HOH . 
F 6 HOH A 147 410 151 HOH HOH . 
F 6 HOH A 148 411 152 HOH HOH . 
F 6 HOH A 149 412 153 HOH HOH . 
F 6 HOH A 150 413 154 HOH HOH . 
F 6 HOH A 151 414 155 HOH HOH . 
F 6 HOH A 152 415 156 HOH HOH . 
F 6 HOH A 153 416 157 HOH HOH . 
F 6 HOH A 154 417 158 HOH HOH . 
F 6 HOH A 155 418 159 HOH HOH . 
F 6 HOH A 156 419 160 HOH HOH . 
F 6 HOH A 157 420 161 HOH HOH . 
F 6 HOH A 158 421 162 HOH HOH . 
F 6 HOH A 159 422 163 HOH HOH . 
F 6 HOH A 160 423 164 HOH HOH . 
F 6 HOH A 161 424 165 HOH HOH . 
F 6 HOH A 162 425 166 HOH HOH . 
F 6 HOH A 163 426 167 HOH HOH . 
F 6 HOH A 164 427 168 HOH HOH . 
F 6 HOH A 165 428 169 HOH HOH . 
F 6 HOH A 166 429 170 HOH HOH . 
F 6 HOH A 167 430 171 HOH HOH . 
F 6 HOH A 168 431 173 HOH HOH . 
F 6 HOH A 169 432 174 HOH HOH . 
F 6 HOH A 170 433 175 HOH HOH . 
F 6 HOH A 171 434 176 HOH HOH . 
F 6 HOH A 172 435 177 HOH HOH . 
F 6 HOH A 173 436 180 HOH HOH . 
F 6 HOH A 174 437 189 HOH HOH . 
F 6 HOH A 175 438 190 HOH HOH . 
F 6 HOH A 176 439 191 HOH HOH . 
F 6 HOH A 177 440 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -4.898 1.167 11.285 1 35.95 ? C1 GOL 400 A 1 
HETATM 2 O O1 GOL . . . D 4 -4.976 0.832 9.921 1 28.54 ? O1 GOL 400 A 1 
HETATM 3 C C2 GOL . . . D 4 -4.689 -0.171 12.001 1 38.7 ? C2 GOL 400 A 1 
HETATM 4 O O2 GOL . . . D 4 -3.413 -0.641 11.689 1 32.72 ? O2 GOL 400 A 1 
HETATM 5 C C3 GOL . . . D 4 -4.8 -0.02 13.5 1 43.35 ? C3 GOL 400 A 1 
HETATM 6 O O3 GOL . . . D 4 -3.805 0.857 13.924 1 35.52 ? O3 GOL 400 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           6 
#