data_3OY1 # _model_server_result.job_id O76CoGv6Q45qDTkR81T3jQ _model_server_result.datetime_utc '2024-12-26 23:38:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OY1 # _exptl.entry_id 3OY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 469.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-(cyclohexylamino)pyridin-4-yl]-4-naphthalen-2-yl-2-(tetrahydro-2H-pyran-4-yl)-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OY1 _cell.length_a 52.126 _cell.length_b 71.328 _cell.length_c 107.752 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N5 O2' _chem_comp.formula_weight 469.578 _chem_comp.id 589 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-(cyclohexylamino)pyridin-4-yl]-4-naphthalen-2-yl-2-(tetrahydro-2H-pyran-4-yl)-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 589 doub 1 n y C1 C6 589 sing 2 n y C2 C3 589 sing 3 n y C2 C10 589 sing 4 n y C3 C4 589 doub 5 n y C3 C7 589 sing 6 n y C4 C5 589 sing 7 n y C5 C6 589 doub 8 n y C7 C8 589 doub 9 n y C8 C9 589 sing 10 n y C8 N11 589 sing 11 n n C9 C10 589 doub 12 n y N11 C12 589 sing 13 n n N11 C15 589 sing 14 n n C12 N13 589 doub 15 n n C12 C23 589 sing 16 n n N13 N14 589 sing 17 n n N14 C15 589 sing 18 n n N14 C17 589 sing 19 n n C15 O16 589 doub 20 n n C17 C18 589 sing 21 n n C17 C22 589 sing 22 n n C18 C19 589 sing 23 n n C19 O20 589 sing 24 n n O20 C21 589 sing 25 n n C21 C22 589 sing 26 n n C23 C24 589 doub 27 n y C23 C28 589 sing 28 n y C24 C25 589 sing 29 n y C25 N26 589 doub 30 n y N26 C27 589 sing 31 n y C27 C28 589 doub 32 n y C27 N29 589 sing 33 n n N29 C30 589 sing 34 n n C30 C31 589 sing 35 n n C30 C35 589 sing 36 n n C31 C32 589 sing 37 n n C32 C33 589 sing 38 n n C33 C34 589 sing 39 n n C34 C35 589 sing 40 n n C1 H1 589 sing 41 n n C4 H4 589 sing 42 n n C5 H5 589 sing 43 n n C6 H6 589 sing 44 n n C7 H7 589 sing 45 n n C9 H9 589 sing 46 n n C10 H10 589 sing 47 n n C17 H17 589 sing 48 n n C18 H18 589 sing 49 n n C18 H18A 589 sing 50 n n C19 H19 589 sing 51 n n C19 H19A 589 sing 52 n n C21 H21 589 sing 53 n n C21 H21A 589 sing 54 n n C22 H22 589 sing 55 n n C22 H22A 589 sing 56 n n C24 H24 589 sing 57 n n C25 H25 589 sing 58 n n C28 H28 589 sing 59 n n N29 HN29 589 sing 60 n n C30 H30 589 sing 61 n n C31 H31 589 sing 62 n n C31 H31A 589 sing 63 n n C32 H32 589 sing 64 n n C32 H32A 589 sing 65 n n C33 H33 589 sing 66 n n C33 H33A 589 sing 67 n n C34 H34 589 sing 68 n n C34 H34A 589 sing 69 n n C35 H35 589 sing 70 n n C35 H35A 589 sing 71 n n # _atom_sites.entry_id 3OY1 _atom_sites.fract_transf_matrix[1][1] 0.019184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 589 A 1 1 1 589 589 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 17 17 HOH HOH . C 3 HOH A 16 18 18 HOH HOH . C 3 HOH A 17 19 19 HOH HOH . C 3 HOH A 18 20 20 HOH HOH . C 3 HOH A 19 21 21 HOH HOH . C 3 HOH A 20 22 22 HOH HOH . C 3 HOH A 21 23 23 HOH HOH . C 3 HOH A 22 24 24 HOH HOH . C 3 HOH A 23 25 25 HOH HOH . C 3 HOH A 24 26 26 HOH HOH . C 3 HOH A 25 27 27 HOH HOH . C 3 HOH A 26 28 28 HOH HOH . C 3 HOH A 27 29 29 HOH HOH . C 3 HOH A 28 30 30 HOH HOH . C 3 HOH A 29 31 31 HOH HOH . C 3 HOH A 30 32 32 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 35 35 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 402 402 HOH HOH . C 3 HOH A 37 403 403 HOH HOH . C 3 HOH A 38 404 404 HOH HOH . C 3 HOH A 39 405 405 HOH HOH . C 3 HOH A 40 406 406 HOH HOH . C 3 HOH A 41 407 407 HOH HOH . C 3 HOH A 42 408 408 HOH HOH . C 3 HOH A 43 409 409 HOH HOH . C 3 HOH A 44 410 410 HOH HOH . C 3 HOH A 45 411 411 HOH HOH . C 3 HOH A 46 413 413 HOH HOH . C 3 HOH A 47 414 414 HOH HOH . C 3 HOH A 48 415 415 HOH HOH . C 3 HOH A 49 416 416 HOH HOH . C 3 HOH A 50 417 417 HOH HOH . C 3 HOH A 51 418 418 HOH HOH . C 3 HOH A 52 419 419 HOH HOH . C 3 HOH A 53 420 420 HOH HOH . C 3 HOH A 54 421 421 HOH HOH . C 3 HOH A 55 422 422 HOH HOH . C 3 HOH A 56 423 423 HOH HOH . C 3 HOH A 57 424 424 HOH HOH . C 3 HOH A 58 425 425 HOH HOH . C 3 HOH A 59 426 426 HOH HOH . C 3 HOH A 60 427 427 HOH HOH . C 3 HOH A 61 428 428 HOH HOH . C 3 HOH A 62 429 429 HOH HOH . C 3 HOH A 63 430 430 HOH HOH . C 3 HOH A 64 431 431 HOH HOH . C 3 HOH A 65 432 432 HOH HOH . C 3 HOH A 66 433 433 HOH HOH . C 3 HOH A 67 434 434 HOH HOH . C 3 HOH A 68 435 435 HOH HOH . C 3 HOH A 69 436 436 HOH HOH . C 3 HOH A 70 437 437 HOH HOH . C 3 HOH A 71 439 439 HOH HOH . C 3 HOH A 72 440 440 HOH HOH . C 3 HOH A 73 441 441 HOH HOH . C 3 HOH A 74 442 442 HOH HOH . C 3 HOH A 75 443 443 HOH HOH . C 3 HOH A 76 444 444 HOH HOH . C 3 HOH A 77 445 445 HOH HOH . C 3 HOH A 78 446 446 HOH HOH . C 3 HOH A 79 447 447 HOH HOH . C 3 HOH A 80 448 448 HOH HOH . C 3 HOH A 81 449 449 HOH HOH . C 3 HOH A 82 450 450 HOH HOH . C 3 HOH A 83 451 451 HOH HOH . C 3 HOH A 84 452 452 HOH HOH . C 3 HOH A 85 453 453 HOH HOH . C 3 HOH A 86 454 454 HOH HOH . C 3 HOH A 87 455 455 HOH HOH . C 3 HOH A 88 456 456 HOH HOH . C 3 HOH A 89 457 457 HOH HOH . C 3 HOH A 90 458 458 HOH HOH . C 3 HOH A 91 459 459 HOH HOH . C 3 HOH A 92 460 460 HOH HOH . C 3 HOH A 93 461 461 HOH HOH . C 3 HOH A 94 462 462 HOH HOH . C 3 HOH A 95 463 463 HOH HOH . C 3 HOH A 96 464 464 HOH HOH . C 3 HOH A 97 465 465 HOH HOH . C 3 HOH A 98 466 466 HOH HOH . C 3 HOH A 99 467 467 HOH HOH . C 3 HOH A 100 468 468 HOH HOH . C 3 HOH A 101 469 469 HOH HOH . C 3 HOH A 102 470 470 HOH HOH . C 3 HOH A 103 471 471 HOH HOH . C 3 HOH A 104 472 472 HOH HOH . C 3 HOH A 105 473 473 HOH HOH . C 3 HOH A 106 474 474 HOH HOH . C 3 HOH A 107 475 475 HOH HOH . C 3 HOH A 108 476 476 HOH HOH . C 3 HOH A 109 477 477 HOH HOH . C 3 HOH A 110 478 478 HOH HOH . C 3 HOH A 111 479 479 HOH HOH . C 3 HOH A 112 480 480 HOH HOH . C 3 HOH A 113 481 481 HOH HOH . C 3 HOH A 114 482 482 HOH HOH . C 3 HOH A 115 483 483 HOH HOH . C 3 HOH A 116 484 484 HOH HOH . C 3 HOH A 117 485 485 HOH HOH . C 3 HOH A 118 486 486 HOH HOH . C 3 HOH A 119 487 487 HOH HOH . C 3 HOH A 120 488 488 HOH HOH . C 3 HOH A 121 489 489 HOH HOH . C 3 HOH A 122 490 490 HOH HOH . C 3 HOH A 123 491 491 HOH HOH . C 3 HOH A 124 492 492 HOH HOH . C 3 HOH A 125 493 493 HOH HOH . C 3 HOH A 126 494 494 HOH HOH . C 3 HOH A 127 495 495 HOH HOH . C 3 HOH A 128 496 496 HOH HOH . C 3 HOH A 129 497 497 HOH HOH . C 3 HOH A 130 498 498 HOH HOH . C 3 HOH A 131 499 499 HOH HOH . C 3 HOH A 132 500 500 HOH HOH . C 3 HOH A 133 501 501 HOH HOH . C 3 HOH A 134 502 502 HOH HOH . C 3 HOH A 135 503 503 HOH HOH . C 3 HOH A 136 504 504 HOH HOH . C 3 HOH A 137 505 505 HOH HOH . C 3 HOH A 138 506 506 HOH HOH . C 3 HOH A 139 507 507 HOH HOH . C 3 HOH A 140 508 508 HOH HOH . C 3 HOH A 141 510 510 HOH HOH . C 3 HOH A 142 511 511 HOH HOH . C 3 HOH A 143 512 512 HOH HOH . C 3 HOH A 144 513 513 HOH HOH . C 3 HOH A 145 514 514 HOH HOH . C 3 HOH A 146 515 515 HOH HOH . C 3 HOH A 147 516 516 HOH HOH . C 3 HOH A 148 517 517 HOH HOH . C 3 HOH A 149 518 518 HOH HOH . C 3 HOH A 150 519 519 HOH HOH . C 3 HOH A 151 520 520 HOH HOH . C 3 HOH A 152 521 521 HOH HOH . C 3 HOH A 153 522 522 HOH HOH . C 3 HOH A 154 523 523 HOH HOH . C 3 HOH A 155 524 524 HOH HOH . C 3 HOH A 156 525 525 HOH HOH . C 3 HOH A 157 526 526 HOH HOH . C 3 HOH A 158 527 527 HOH HOH . C 3 HOH A 159 528 528 HOH HOH . C 3 HOH A 160 529 529 HOH HOH . C 3 HOH A 161 530 530 HOH HOH . C 3 HOH A 162 531 531 HOH HOH . C 3 HOH A 163 532 532 HOH HOH . C 3 HOH A 164 533 533 HOH HOH . C 3 HOH A 165 534 534 HOH HOH . C 3 HOH A 166 535 535 HOH HOH . C 3 HOH A 167 536 536 HOH HOH . C 3 HOH A 168 537 537 HOH HOH . C 3 HOH A 169 538 538 HOH HOH . C 3 HOH A 170 539 539 HOH HOH . C 3 HOH A 171 540 540 HOH HOH . C 3 HOH A 172 541 541 HOH HOH . C 3 HOH A 173 542 542 HOH HOH . C 3 HOH A 174 543 543 HOH HOH . C 3 HOH A 175 544 544 HOH HOH . C 3 HOH A 176 545 545 HOH HOH . C 3 HOH A 177 546 546 HOH HOH . C 3 HOH A 178 547 547 HOH HOH . C 3 HOH A 179 548 548 HOH HOH . C 3 HOH A 180 549 549 HOH HOH . C 3 HOH A 181 550 550 HOH HOH . C 3 HOH A 182 551 551 HOH HOH . C 3 HOH A 183 552 552 HOH HOH . C 3 HOH A 184 553 553 HOH HOH . C 3 HOH A 185 554 554 HOH HOH . C 3 HOH A 186 555 555 HOH HOH . C 3 HOH A 187 556 556 HOH HOH . C 3 HOH A 188 557 557 HOH HOH . C 3 HOH A 189 558 558 HOH HOH . C 3 HOH A 190 559 559 HOH HOH . C 3 HOH A 191 560 560 HOH HOH . C 3 HOH A 192 561 561 HOH HOH . C 3 HOH A 193 562 562 HOH HOH . C 3 HOH A 194 563 563 HOH HOH . C 3 HOH A 195 564 564 HOH HOH . C 3 HOH A 196 565 565 HOH HOH . C 3 HOH A 197 566 566 HOH HOH . C 3 HOH A 198 567 567 HOH HOH . C 3 HOH A 199 568 568 HOH HOH . C 3 HOH A 200 569 569 HOH HOH . C 3 HOH A 201 570 570 HOH HOH . C 3 HOH A 202 571 571 HOH HOH . C 3 HOH A 203 572 572 HOH HOH . C 3 HOH A 204 573 573 HOH HOH . C 3 HOH A 205 574 574 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 589 . . . B 2 -17.396 11.9 -36.435 1 26.45 ? C1 589 1 A 1 HETATM 2 C C2 589 . . . B 2 -18.376 11.694 -35.518 1 26.34 ? C2 589 1 A 1 HETATM 3 C C3 589 . . . B 2 -18.345 12.398 -34.239 1 26.25 ? C3 589 1 A 1 HETATM 4 C C4 589 . . . B 2 -17.308 13.268 -33.999 1 26.36 ? C4 589 1 A 1 HETATM 5 C C5 589 . . . B 2 -16.332 13.441 -34.937 1 26.4 ? C5 589 1 A 1 HETATM 6 C C6 589 . . . B 2 -16.388 12.775 -36.133 1 26.36 ? C6 589 1 A 1 HETATM 7 C C7 589 . . . B 2 -19.344 12.177 -33.319 1 25.88 ? C7 589 1 A 1 HETATM 8 C C8 589 . . . B 2 -20.388 11.319 -33.511 1 26.31 ? C8 589 1 A 1 HETATM 9 C C9 589 . . . B 2 -20.364 10.691 -34.747 1 26.14 ? C9 589 1 A 1 HETATM 10 C C10 589 . . . B 2 -19.402 10.845 -35.729 1 26.34 ? C10 589 1 A 1 HETATM 11 N N11 589 . . . B 2 -21.334 11.123 -32.604 1 26.22 ? N11 589 1 A 1 HETATM 12 C C12 589 . . . B 2 -21.713 9.967 -32.081 1 25.65 ? C12 589 1 A 1 HETATM 13 N N13 589 . . . B 2 -22.702 10.25 -31.249 1 26.89 ? N13 589 1 A 1 HETATM 14 N N14 589 . . . B 2 -22.872 11.574 -31.263 1 27.13 ? N14 589 1 A 1 HETATM 15 C C15 589 . . . B 2 -22.014 12.074 -32.094 1 26.8 ? C15 589 1 A 1 HETATM 16 O O16 589 . . . B 2 -21.87 13.281 -32.397 1 26.46 ? O16 589 1 A 1 HETATM 17 C C17 589 . . . B 2 -23.918 11.989 -30.346 1 27.55 ? C17 589 1 A 1 HETATM 18 C C18 589 . . . B 2 -25.112 12.578 -30.987 1 28.82 ? C18 589 1 A 1 HETATM 19 C C19 589 . . . B 2 -26.197 12.514 -29.974 1 29.1 ? C19 589 1 A 1 HETATM 20 O O20 589 . . . B 2 -25.888 13.392 -28.94 1 29.89 ? O20 589 1 A 1 HETATM 21 C C21 589 . . . B 2 -24.623 13.211 -28.324 1 28.92 ? C21 589 1 A 1 HETATM 22 C C22 589 . . . B 2 -23.483 12.938 -29.281 1 28.53 ? C22 589 1 A 1 HETATM 23 C C23 589 . . . B 2 -21.298 8.561 -32.297 1 25.94 ? C23 589 1 A 1 HETATM 24 C C24 589 . . . B 2 -20.034 8.245 -32.663 1 24.55 ? C24 589 1 A 1 HETATM 25 C C25 589 . . . B 2 -19.693 6.945 -32.832 1 24.39 ? C25 589 1 A 1 HETATM 26 N N26 589 . . . B 2 -20.539 5.98 -32.672 1 24.67 ? N26 589 1 A 1 HETATM 27 C C27 589 . . . B 2 -21.791 6.22 -32.301 1 24.98 ? C27 589 1 A 1 HETATM 28 C C28 589 . . . B 2 -22.176 7.525 -32.107 1 24.58 ? C28 589 1 A 1 HETATM 29 N N29 589 . . . B 2 -22.605 5.178 -32.155 1 24.66 ? N29 589 1 A 1 HETATM 30 C C30 589 . . . B 2 -23.899 5.204 -31.569 1 24.98 ? C30 589 1 A 1 HETATM 31 C C31 589 . . . B 2 -24.632 3.95 -31.948 1 24.61 ? C31 589 1 A 1 HETATM 32 C C32 589 . . . B 2 -25.978 3.897 -31.274 1 24.94 ? C32 589 1 A 1 HETATM 33 C C33 589 . . . B 2 -25.895 3.937 -29.777 1 24.57 ? C33 589 1 A 1 HETATM 34 C C34 589 . . . B 2 -25.114 5.156 -29.377 1 24.97 ? C34 589 1 A 1 HETATM 35 C C35 589 . . . B 2 -23.773 5.259 -30.068 1 24.58 ? C35 589 1 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #