data_3OZ1 # _model_server_result.job_id fe6PGaRCRhV7azerXh5BuA _model_server_result.datetime_utc '2024-10-19 16:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 3OZ1 # _exptl.entry_id 3OZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.801 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OZ1 _cell.length_a 113.589 _cell.length_b 114.63 _cell.length_c 92.962 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 57 A CYS 300 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A SG CYS 60 A CYS 303 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A NE2 HIS 77 A HIS 320 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A SG CYS 84 A CYS 327 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B SG CYS 57 B CYS 300 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 B SG CYS 60 B CYS 303 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 B NE2 HIS 77 B HIS 320 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc8 B SG CYS 84 B CYS 327 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 C SG CYS 57 C CYS 300 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 C SG CYS 60 C CYS 303 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc11 C NE2 HIS 77 C HIS 320 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc12 C SG CYS 84 C CYS 327 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc13 D SG CYS 57 D CYS 300 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc14 D SG CYS 60 D CYS 303 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 D NE2 HIS 77 D HIS 320 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc16 D SG CYS 84 D CYS 327 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C37 H47 N5 O3' _chem_comp.formula_weight 609.801 _chem_comp.id BMB _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O BMB doub 70 n n C CA BMB sing 71 n n C NBE BMB sing 72 n n N CA BMB sing 73 n n N CAB BMB sing 74 n n CA CB BMB sing 75 n n CB CAA BMB sing 76 n n OAD CBH BMB doub 77 n n OAE CBI BMB doub 78 n n CAF CAI BMB doub 79 n y CAF CAJ BMB sing 80 n y CAG CAK BMB doub 81 n y CAG CAL BMB sing 82 n y CAH CAM BMB doub 83 n y CAH CAN BMB sing 84 n y CAI CAO BMB sing 85 n y CAJ CAP BMB doub 86 n y CAK CAQ BMB sing 87 n y CAL CAR BMB doub 88 n y CAM CAS BMB sing 89 n y CAN CAT BMB doub 90 n y CAO CBJ BMB doub 91 n y CAP CBJ BMB sing 92 n y CAQ CBK BMB doub 93 n y CAR CBK BMB sing 94 n y CAS CBL BMB doub 95 n y CAT CBL BMB sing 96 n y CAV CAW BMB sing 97 n n CAV NBD BMB sing 98 n n CAW CBM BMB sing 99 n n CAX CAY BMB sing 100 n n CAX CBM BMB sing 101 n n CAY CBO BMB sing 102 n n CAZ CBA BMB sing 103 n n CAZ CBO BMB sing 104 n n CBA CBP BMB sing 105 n n CBB NBD BMB sing 106 n n CBB CBJ BMB sing 107 n n NBE CBQ BMB sing 108 n n NBF CBH BMB sing 109 n n NBF CBR BMB sing 110 n n CBH CBP BMB sing 111 n n CBI CBQ BMB sing 112 n n CBI NBS BMB sing 113 n n CBK CBR BMB sing 114 n n CBL CBR BMB sing 115 n n CBM CBQ BMB sing 116 n n CBO NBS BMB sing 117 n n CBP NBS BMB sing 118 n n N HN BMB sing 119 n n CA HA BMB sing 120 n n CB HB BMB sing 121 n n CB HBA BMB sing 122 n n CAA HAA BMB sing 123 n n CAA HAAA BMB sing 124 n n CAA HAAB BMB sing 125 n n CAB HAB BMB sing 126 n n CAB HABA BMB sing 127 n n CAB HABB BMB sing 128 n n CAF HAF BMB sing 129 n n CAG HAG BMB sing 130 n n CAH HAH BMB sing 131 n n CAI HAI BMB sing 132 n n CAJ HAJ BMB sing 133 n n CAK HAK BMB sing 134 n n CAL HAL BMB sing 135 n n CAM HAM BMB sing 136 n n CAN HAN BMB sing 137 n n CAO HAO BMB sing 138 n n CAP HAP BMB sing 139 n n CAQ HAQ BMB sing 140 n n CAR HAR BMB sing 141 n n CAS HAS BMB sing 142 n n CAT HAT BMB sing 143 n n CAV HAV BMB sing 144 n n CAV HAVA BMB sing 145 n n CAW HAW BMB sing 146 n n CAW HAWA BMB sing 147 n n CAX HAX BMB sing 148 n n CAX HAXA BMB sing 149 n n CAY HAY BMB sing 150 n n CAY HAYA BMB sing 151 n n CAZ HAZ BMB sing 152 n n CAZ HAZA BMB sing 153 n n CBA HBAA BMB sing 154 n n CBA HBAB BMB sing 155 n n CBB HBB BMB sing 156 n n CBB HBBA BMB sing 157 n n NBD HNBD BMB sing 158 n n NBE HNBE BMB sing 159 n n NBF HNBF BMB sing 160 n n CBM HBM BMB sing 161 n n CBO HBO BMB sing 162 n n CBP HBP BMB sing 163 n n CBQ HBQ BMB sing 164 n n CBR HBR BMB sing 165 n n # _atom_sites.entry_id 3OZ1 _atom_sites.fract_transf_matrix[1][1] 0.008804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 501 501 ZN ZN . F 3 BMB A 1 600 600 BMB DRG . G 2 ZN B 1 501 501 ZN ZN . H 3 BMB B 1 600 600 BMB DRG . I 2 ZN C 1 501 501 ZN ZN . J 3 BMB C 1 600 600 BMB DRG . K 2 ZN D 1 501 501 ZN ZN . L 3 BMB D 1 600 600 BMB DRG . M 4 HOH A 1 5 5 HOH HOH . N 4 HOH B 1 21 21 HOH HOH . N 4 HOH B 2 23 23 HOH HOH . N 4 HOH B 3 29 29 HOH HOH . O 4 HOH C 1 6 6 HOH HOH . O 4 HOH C 2 8 8 HOH HOH . O 4 HOH C 3 16 16 HOH HOH . O 4 HOH C 4 38 38 HOH HOH . P 4 HOH D 1 37 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BMB . . . F 3 -16.885 -30.074 -9.459 1 16.98 ? C BMB 600 A 1 HETATM 2 N N BMB . . . F 3 -14.732 -29.099 -9.924 1 63.28 ? N BMB 600 A 1 HETATM 3 O O BMB . . . F 3 -17.045 -29.899 -8.245 1 163.3 ? O BMB 600 A 1 HETATM 4 C CA BMB . . . F 3 -15.508 -30.345 -10.031 1 125.79 ? CA BMB 600 A 1 HETATM 5 C CB BMB . . . F 3 -14.839 -31.523 -9.288 1 59.55 ? CB BMB 600 A 1 HETATM 6 C CAA BMB . . . F 3 -15.788 -32.715 -9.135 1 44.48 ? CAA BMB 600 A 1 HETATM 7 C CAB BMB . . . F 3 -14.34 -28.789 -8.53 1 74.26 ? CAB BMB 600 A 1 HETATM 8 O OAD BMB . . . F 3 -22.681 -31.865 -11.593 1 80.25 ? OAD BMB 600 A 1 HETATM 9 O OAE BMB . . . F 3 -19.585 -32.169 -10.579 1 67.45 ? OAE BMB 600 A 1 HETATM 10 C CAF BMB . . . F 3 -14.717 -23.73 -8.504 1 149.48 ? CAF BMB 600 A 1 HETATM 11 C CAG BMB . . . F 3 -22.488 -38.334 -13.665 1 50.4 ? CAG BMB 600 A 1 HETATM 12 C CAH BMB . . . F 3 -27.738 -33.143 -12.377 1 262.47 ? CAH BMB 600 A 1 HETATM 13 C CAI BMB . . . F 3 -14.409 -23.361 -9.817 1 110.06 ? CAI BMB 600 A 1 HETATM 14 C CAJ BMB . . . F 3 -15.767 -24.621 -8.262 1 197.11 ? CAJ BMB 600 A 1 HETATM 15 C CAK BMB . . . F 3 -21.524 -37.392 -13.316 1 39.79 ? CAK BMB 600 A 1 HETATM 16 C CAL BMB . . . F 3 -23.829 -37.994 -13.601 1 57.01 ? CAL BMB 600 A 1 HETATM 17 C CAM BMB . . . F 3 -26.773 -32.365 -13.024 1 64.78 ? CAM BMB 600 A 1 HETATM 18 C CAN BMB . . . F 3 -27.374 -34.323 -11.717 1 69.31 ? CAN BMB 600 A 1 HETATM 19 C CAO BMB . . . F 3 -15.171 -23.867 -10.876 1 260.04 ? CAO BMB 600 A 1 HETATM 20 C CAP BMB . . . F 3 -16.52 -25.132 -9.326 1 125.23 ? CAP BMB 600 A 1 HETATM 21 C CAQ BMB . . . F 3 -21.908 -36.12 -12.907 1 166.47 ? CAQ BMB 600 A 1 HETATM 22 C CAR BMB . . . F 3 -24.213 -36.724 -13.176 1 74.69 ? CAR BMB 600 A 1 HETATM 23 C CAS BMB . . . F 3 -25.45 -32.802 -13.023 1 179.31 ? CAS BMB 600 A 1 HETATM 24 C CAT BMB . . . F 3 -26.039 -34.738 -11.687 1 74 ? CAT BMB 600 A 1 HETATM 25 C CAV BMB . . . F 3 -18.863 -26.858 -12.026 1 143.31 ? CAV BMB 600 A 1 HETATM 26 C CAW BMB . . . F 3 -19.314 -28.326 -11.995 1 64.06 ? CAW BMB 600 A 1 HETATM 27 C CAX BMB . . . F 3 -21.469 -28.868 -10.695 1 59.82 ? CAX BMB 600 A 1 HETATM 28 C CAY BMB . . . F 3 -22.111 -28.947 -9.295 1 84.32 ? CAY BMB 600 A 1 HETATM 29 C CAZ BMB . . . F 3 -23.362 -30.929 -8.477 1 33.57 ? CAZ BMB 600 A 1 HETATM 30 C CBA BMB . . . F 3 -23.06 -32.42 -8.358 1 67.31 ? CBA BMB 600 A 1 HETATM 31 C CBB BMB . . . F 3 -17.026 -25.316 -11.839 1 149.11 ? CBB BMB 600 A 1 HETATM 32 N NBD BMB . . . F 3 -17.441 -26.724 -11.658 1 161.19 ? NBD BMB 600 A 1 HETATM 33 N NBE BMB . . . F 3 -17.863 -30.084 -10.351 1 67.78 ? NBE BMB 600 A 1 HETATM 34 N NBF BMB . . . F 3 -23.011 -34.036 -11.057 1 174.35 ? NBF BMB 600 A 1 HETATM 35 C CBH BMB . . . F 3 -22.604 -32.795 -10.791 1 45.12 ? CBH BMB 600 A 1 HETATM 36 C CBI BMB . . . F 3 -20.05 -31.193 -9.977 1 41.69 ? CBI BMB 600 A 1 HETATM 37 C CBJ BMB . . . F 3 -16.208 -24.777 -10.644 1 254.56 ? CBJ BMB 600 A 1 HETATM 38 C CBK BMB . . . F 3 -23.254 -35.785 -12.817 1 55.17 ? CBK BMB 600 A 1 HETATM 39 C CBL BMB . . . F 3 -25.085 -33.988 -12.372 1 85.51 ? CBL BMB 600 A 1 HETATM 40 C CBM BMB . . . F 3 -19.938 -28.688 -10.619 1 54.21 ? CBM BMB 600 A 1 HETATM 41 C CBO BMB . . . F 3 -21.979 -30.316 -8.597 1 103.22 ? CBO BMB 600 A 1 HETATM 42 C CBP BMB . . . F 3 -21.976 -32.6 -9.413 1 45.44 ? CBP BMB 600 A 1 HETATM 43 C CBQ BMB . . . F 3 -19.252 -29.877 -9.921 1 119.23 ? CBQ BMB 600 A 1 HETATM 44 C CBR BMB . . . F 3 -23.609 -34.367 -12.359 1 120.2 ? CBR BMB 600 A 1 HETATM 45 N NBS BMB . . . F 3 -21.234 -31.326 -9.381 1 78.23 ? NBS BMB 600 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 45 #