data_3OZ1
#
_model_server_result.job_id            MQM-neGZ7YSX1GQUWNRoaQ 
_model_server_result.datetime_utc      '2024-12-26 14:17:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":600}' 
#
_entry.id    3OZ1 
#
_exptl.entry_id    3OZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              609.801 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OZ1 
_cell.length_a            113.589 
_cell.length_b            114.63 
_cell.length_c            92.962 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 57 A CYS 300 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc2 A SG CYS 60 A CYS 303 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc3 A NE2 HIS 77 A HIS 320 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 A SG CYS 84 A CYS 327 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc5 B SG CYS 57 B CYS 300 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 B SG CYS 60 B CYS 303 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc7 B NE2 HIS 77 B HIS 320 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc8 B SG CYS 84 B CYS 327 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc9 C SG CYS 57 C CYS 300 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc10 C SG CYS 60 C CYS 303 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc11 C NE2 HIS 77 C HIS 320 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc12 C SG CYS 84 C CYS 327 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc13 D SG CYS 57 D CYS 300 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc14 D SG CYS 60 D CYS 303 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc15 D NE2 HIS 77 D HIS 320 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc16 D SG CYS 84 D CYS 327 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C37 H47 N5 O3' 
_chem_comp.formula_weight    609.801 
_chem_comp.id                BMB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O BMB doub 70 n n 
C CA BMB sing 71 n n 
C NBE BMB sing 72 n n 
N CA BMB sing 73 n n 
N CAB BMB sing 74 n n 
CA CB BMB sing 75 n n 
CB CAA BMB sing 76 n n 
OAD CBH BMB doub 77 n n 
OAE CBI BMB doub 78 n n 
CAF CAI BMB doub 79 n y 
CAF CAJ BMB sing 80 n y 
CAG CAK BMB doub 81 n y 
CAG CAL BMB sing 82 n y 
CAH CAM BMB doub 83 n y 
CAH CAN BMB sing 84 n y 
CAI CAO BMB sing 85 n y 
CAJ CAP BMB doub 86 n y 
CAK CAQ BMB sing 87 n y 
CAL CAR BMB doub 88 n y 
CAM CAS BMB sing 89 n y 
CAN CAT BMB doub 90 n y 
CAO CBJ BMB doub 91 n y 
CAP CBJ BMB sing 92 n y 
CAQ CBK BMB doub 93 n y 
CAR CBK BMB sing 94 n y 
CAS CBL BMB doub 95 n y 
CAT CBL BMB sing 96 n y 
CAV CAW BMB sing 97 n n 
CAV NBD BMB sing 98 n n 
CAW CBM BMB sing 99 n n 
CAX CAY BMB sing 100 n n 
CAX CBM BMB sing 101 n n 
CAY CBO BMB sing 102 n n 
CAZ CBA BMB sing 103 n n 
CAZ CBO BMB sing 104 n n 
CBA CBP BMB sing 105 n n 
CBB NBD BMB sing 106 n n 
CBB CBJ BMB sing 107 n n 
NBE CBQ BMB sing 108 n n 
NBF CBH BMB sing 109 n n 
NBF CBR BMB sing 110 n n 
CBH CBP BMB sing 111 n n 
CBI CBQ BMB sing 112 n n 
CBI NBS BMB sing 113 n n 
CBK CBR BMB sing 114 n n 
CBL CBR BMB sing 115 n n 
CBM CBQ BMB sing 116 n n 
CBO NBS BMB sing 117 n n 
CBP NBS BMB sing 118 n n 
N HN BMB sing 119 n n 
CA HA BMB sing 120 n n 
CB HB BMB sing 121 n n 
CB HBA BMB sing 122 n n 
CAA HAA BMB sing 123 n n 
CAA HAAA BMB sing 124 n n 
CAA HAAB BMB sing 125 n n 
CAB HAB BMB sing 126 n n 
CAB HABA BMB sing 127 n n 
CAB HABB BMB sing 128 n n 
CAF HAF BMB sing 129 n n 
CAG HAG BMB sing 130 n n 
CAH HAH BMB sing 131 n n 
CAI HAI BMB sing 132 n n 
CAJ HAJ BMB sing 133 n n 
CAK HAK BMB sing 134 n n 
CAL HAL BMB sing 135 n n 
CAM HAM BMB sing 136 n n 
CAN HAN BMB sing 137 n n 
CAO HAO BMB sing 138 n n 
CAP HAP BMB sing 139 n n 
CAQ HAQ BMB sing 140 n n 
CAR HAR BMB sing 141 n n 
CAS HAS BMB sing 142 n n 
CAT HAT BMB sing 143 n n 
CAV HAV BMB sing 144 n n 
CAV HAVA BMB sing 145 n n 
CAW HAW BMB sing 146 n n 
CAW HAWA BMB sing 147 n n 
CAX HAX BMB sing 148 n n 
CAX HAXA BMB sing 149 n n 
CAY HAY BMB sing 150 n n 
CAY HAYA BMB sing 151 n n 
CAZ HAZ BMB sing 152 n n 
CAZ HAZA BMB sing 153 n n 
CBA HBAA BMB sing 154 n n 
CBA HBAB BMB sing 155 n n 
CBB HBB BMB sing 156 n n 
CBB HBBA BMB sing 157 n n 
NBD HNBD BMB sing 158 n n 
NBE HNBE BMB sing 159 n n 
NBF HNBF BMB sing 160 n n 
CBM HBM BMB sing 161 n n 
CBO HBO BMB sing 162 n n 
CBP HBP BMB sing 163 n n 
CBQ HBQ BMB sing 164 n n 
CBR HBR BMB sing 165 n n 
#
_atom_sites.entry_id                     3OZ1 
_atom_sites.fract_transf_matrix[1][1]    0.008804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 501 501 ZN ZN . 
F 3 BMB A 1 600 600 BMB DRG . 
G 2 ZN B 1 501 501 ZN ZN . 
H 3 BMB B 1 600 600 BMB DRG . 
I 2 ZN C 1 501 501 ZN ZN . 
J 3 BMB C 1 600 600 BMB DRG . 
K 2 ZN D 1 501 501 ZN ZN . 
L 3 BMB D 1 600 600 BMB DRG . 
M 4 HOH A 1 5 5 HOH HOH . 
N 4 HOH B 1 21 21 HOH HOH . 
N 4 HOH B 2 23 23 HOH HOH . 
N 4 HOH B 3 29 29 HOH HOH . 
O 4 HOH C 1 6 6 HOH HOH . 
O 4 HOH C 2 8 8 HOH HOH . 
O 4 HOH C 3 16 16 HOH HOH . 
O 4 HOH C 4 38 38 HOH HOH . 
P 4 HOH D 1 37 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C BMB . . . H 3 -0.113 -44.887 26.931 1 16.08 ? C BMB 600 B 1 
HETATM 2 N N BMB . . . H 3 1.319 -42.895 26.992 1 48.42 ? N BMB 600 B 1 
HETATM 3 O O BMB . . . H 3 -0.157 -45.208 25.745 1 107.06 ? O BMB 600 B 1 
HETATM 4 C CA BMB . . . H 3 -0.015 -43.421 27.341 1 100.45 ? CA BMB 600 B 1 
HETATM 5 C CB BMB . . . H 3 -1.164 -42.621 26.692 1 43.22 ? CB BMB 600 B 1 
HETATM 6 C CAA BMB . . . H 3 -2.534 -43.324 26.82 1 39.74 ? CAA BMB 600 B 1 
HETATM 7 C CAB BMB . . . H 3 1.465 -42.729 25.53 1 106.09 ? CAB BMB 600 B 1 
HETATM 8 O OAD BMB . . . H 3 -2.587 -50.02 30.026 1 112.11 ? OAD BMB 600 B 1 
HETATM 9 O OAE BMB . . . H 3 -2.468 -47.002 28.657 1 76.73 ? OAE BMB 600 B 1 
HETATM 10 C CAF BMB . . . H 3 7.625 -43.275 27.206 1 143.52 ? CAF BMB 600 B 1 
HETATM 11 C CAG BMB . . . H 3 -8.531 -48.272 32.84 1 74.43 ? CAG BMB 600 B 1 
HETATM 12 C CAH BMB . . . H 3 -4.869 -54.638 31.386 1 190.24 ? CAH BMB 600 B 1 
HETATM 13 C CAI BMB . . . H 3 7.898 -43.652 28.524 1 107 ? CAI BMB 600 B 1 
HETATM 14 C CAJ BMB . . . H 3 6.385 -43.597 26.63 1 213.29 ? CAJ BMB 600 B 1 
HETATM 15 C CAK BMB . . . H 3 -7.479 -47.557 32.266 1 62.88 ? CAK BMB 600 B 1 
HETATM 16 C CAL BMB . . . H 3 -8.485 -49.672 32.869 1 28.31 ? CAL BMB 600 B 1 
HETATM 17 C CAM BMB . . . H 3 -3.863 -53.847 31.943 1 281.42 ? CAM BMB 600 B 1 
HETATM 18 C CAN BMB . . . H 3 -5.958 -54.043 30.745 1 37.89 ? CAN BMB 600 B 1 
HETATM 19 C CAO BMB . . . H 3 6.896 -44.306 29.254 1 211.72 ? CAO BMB 600 B 1 
HETATM 20 C CAP BMB . . . H 3 5.4 -44.281 27.355 1 183.91 ? CAP BMB 600 B 1 
HETATM 21 C CAQ BMB . . . H 3 -6.379 -48.247 31.749 1 86.41 ? CAQ BMB 600 B 1 
HETATM 22 C CAR BMB . . . H 3 -7.384 -50.357 32.355 1 239.05 ? CAR BMB 600 B 1 
HETATM 23 C CAS BMB . . . H 3 -3.958 -52.46 31.863 1 248.49 ? CAS BMB 600 B 1 
HETATM 24 C CAT BMB . . . H 3 -6.055 -52.655 30.659 1 73.32 ? CAT BMB 600 B 1 
HETATM 25 C CAV BMB . . . H 3 3.118 -47.178 29.161 1 178.55 ? CAV BMB 600 B 1 
HETATM 26 C CAW BMB . . . H 3 1.629 -47.356 29.487 1 35.6 ? CAW BMB 600 B 1 
HETATM 27 C CAX BMB . . . H 3 0.449 -49.454 28.653 1 111.36 ? CAX BMB 600 B 1 
HETATM 28 C CAY BMB . . . H 3 0.045 -50.243 27.393 1 42.89 ? CAY BMB 600 B 1 
HETATM 29 C CAZ BMB . . . H 3 -2.234 -51.169 26.967 1 99.12 ? CAZ BMB 600 B 1 
HETATM 30 C CBA BMB . . . H 3 -3.649 -50.586 26.999 1 35.99 ? CBA BMB 600 B 1 
HETATM 31 C CBB BMB . . . H 3 4.612 -45.401 29.528 1 106.53 ? CBB BMB 600 B 1 
HETATM 32 N NBD BMB . . . H 3 3.418 -45.798 28.759 1 153.67 ? NBD BMB 600 B 1 
HETATM 33 N NBE BMB . . . H 3 -0.156 -45.746 27.936 1 85.41 ? NBE BMB 600 B 1 
HETATM 34 N NBF BMB . . . H 3 -4.848 -49.943 29.794 1 42.27 ? NBF BMB 600 B 1 
HETATM 35 C CBH BMB . . . H 3 -3.596 -49.807 29.353 1 68.18 ? CBH BMB 600 B 1 
HETATM 36 C CBI BMB . . . H 3 -1.676 -47.712 28.037 1 42.21 ? CBI BMB 600 B 1 
HETATM 37 C CBJ BMB . . . H 3 5.664 -44.66 28.676 1 279.82 ? CBJ BMB 600 B 1 
HETATM 38 C CBK BMB . . . H 3 -6.327 -49.646 31.782 1 23.11 ? CBK BMB 600 B 1 
HETATM 39 C CBL BMB . . . H 3 -5.073 -51.868 31.267 1 95.76 ? CBL BMB 600 B 1 
HETATM 40 C CBM BMB . . . H 3 0.904 -48.032 28.3 1 23.08 ? CBM BMB 600 B 1 
HETATM 41 C CBO BMB . . . H 3 -1.365 -49.925 26.856 1 44.4 ? CBO BMB 600 B 1 
HETATM 42 C CBP BMB . . . H 3 -3.476 -49.368 27.914 1 54.65 ? CBP BMB 600 B 1 
HETATM 43 C CBQ BMB . . . H 3 -0.266 -47.193 27.705 1 37.13 ? CBQ BMB 600 B 1 
HETATM 44 C CBR BMB . . . H 3 -5.101 -50.346 31.18 1 76.88 ? CBR BMB 600 B 1 
HETATM 45 N NBS BMB . . . H 3 -2.1 -48.909 27.647 1 40.96 ? NBS BMB 600 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          26 
_model_server_stats.element_count           45 
#