data_3OZ1 # _model_server_result.job_id um7RtrBhf0e_fBEcgUrBDg _model_server_result.datetime_utc '2024-12-26 13:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":600}' # _entry.id 3OZ1 # _exptl.entry_id 3OZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.801 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OZ1 _cell.length_a 113.589 _cell.length_b 114.63 _cell.length_c 92.962 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 57 A CYS 300 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A SG CYS 60 A CYS 303 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A NE2 HIS 77 A HIS 320 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A SG CYS 84 A CYS 327 1_555 E ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 B SG CYS 57 B CYS 300 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 B SG CYS 60 B CYS 303 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 B NE2 HIS 77 B HIS 320 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc8 B SG CYS 84 B CYS 327 1_555 G ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 C SG CYS 57 C CYS 300 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 C SG CYS 60 C CYS 303 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc11 C NE2 HIS 77 C HIS 320 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc12 C SG CYS 84 C CYS 327 1_555 I ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc13 D SG CYS 57 D CYS 300 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc14 D SG CYS 60 D CYS 303 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 D NE2 HIS 77 D HIS 320 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc16 D SG CYS 84 D CYS 327 1_555 K ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? # _chem_comp.formula 'C37 H47 N5 O3' _chem_comp.formula_weight 609.801 _chem_comp.id BMB _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S,7R,9aS)-7-[2-(benzylamino)ethyl]-N-(diphenylmethyl)-6-{[(2S)-2-(methylamino)butanoyl]amino}-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O BMB doub 70 n n C CA BMB sing 71 n n C NBE BMB sing 72 n n N CA BMB sing 73 n n N CAB BMB sing 74 n n CA CB BMB sing 75 n n CB CAA BMB sing 76 n n OAD CBH BMB doub 77 n n OAE CBI BMB doub 78 n n CAF CAI BMB doub 79 n y CAF CAJ BMB sing 80 n y CAG CAK BMB doub 81 n y CAG CAL BMB sing 82 n y CAH CAM BMB doub 83 n y CAH CAN BMB sing 84 n y CAI CAO BMB sing 85 n y CAJ CAP BMB doub 86 n y CAK CAQ BMB sing 87 n y CAL CAR BMB doub 88 n y CAM CAS BMB sing 89 n y CAN CAT BMB doub 90 n y CAO CBJ BMB doub 91 n y CAP CBJ BMB sing 92 n y CAQ CBK BMB doub 93 n y CAR CBK BMB sing 94 n y CAS CBL BMB doub 95 n y CAT CBL BMB sing 96 n y CAV CAW BMB sing 97 n n CAV NBD BMB sing 98 n n CAW CBM BMB sing 99 n n CAX CAY BMB sing 100 n n CAX CBM BMB sing 101 n n CAY CBO BMB sing 102 n n CAZ CBA BMB sing 103 n n CAZ CBO BMB sing 104 n n CBA CBP BMB sing 105 n n CBB NBD BMB sing 106 n n CBB CBJ BMB sing 107 n n NBE CBQ BMB sing 108 n n NBF CBH BMB sing 109 n n NBF CBR BMB sing 110 n n CBH CBP BMB sing 111 n n CBI CBQ BMB sing 112 n n CBI NBS BMB sing 113 n n CBK CBR BMB sing 114 n n CBL CBR BMB sing 115 n n CBM CBQ BMB sing 116 n n CBO NBS BMB sing 117 n n CBP NBS BMB sing 118 n n N HN BMB sing 119 n n CA HA BMB sing 120 n n CB HB BMB sing 121 n n CB HBA BMB sing 122 n n CAA HAA BMB sing 123 n n CAA HAAA BMB sing 124 n n CAA HAAB BMB sing 125 n n CAB HAB BMB sing 126 n n CAB HABA BMB sing 127 n n CAB HABB BMB sing 128 n n CAF HAF BMB sing 129 n n CAG HAG BMB sing 130 n n CAH HAH BMB sing 131 n n CAI HAI BMB sing 132 n n CAJ HAJ BMB sing 133 n n CAK HAK BMB sing 134 n n CAL HAL BMB sing 135 n n CAM HAM BMB sing 136 n n CAN HAN BMB sing 137 n n CAO HAO BMB sing 138 n n CAP HAP BMB sing 139 n n CAQ HAQ BMB sing 140 n n CAR HAR BMB sing 141 n n CAS HAS BMB sing 142 n n CAT HAT BMB sing 143 n n CAV HAV BMB sing 144 n n CAV HAVA BMB sing 145 n n CAW HAW BMB sing 146 n n CAW HAWA BMB sing 147 n n CAX HAX BMB sing 148 n n CAX HAXA BMB sing 149 n n CAY HAY BMB sing 150 n n CAY HAYA BMB sing 151 n n CAZ HAZ BMB sing 152 n n CAZ HAZA BMB sing 153 n n CBA HBAA BMB sing 154 n n CBA HBAB BMB sing 155 n n CBB HBB BMB sing 156 n n CBB HBBA BMB sing 157 n n NBD HNBD BMB sing 158 n n NBE HNBE BMB sing 159 n n NBF HNBF BMB sing 160 n n CBM HBM BMB sing 161 n n CBO HBO BMB sing 162 n n CBP HBP BMB sing 163 n n CBQ HBQ BMB sing 164 n n CBR HBR BMB sing 165 n n # _atom_sites.entry_id 3OZ1 _atom_sites.fract_transf_matrix[1][1] 0.008804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 501 501 ZN ZN . F 3 BMB A 1 600 600 BMB DRG . G 2 ZN B 1 501 501 ZN ZN . H 3 BMB B 1 600 600 BMB DRG . I 2 ZN C 1 501 501 ZN ZN . J 3 BMB C 1 600 600 BMB DRG . K 2 ZN D 1 501 501 ZN ZN . L 3 BMB D 1 600 600 BMB DRG . M 4 HOH A 1 5 5 HOH HOH . N 4 HOH B 1 21 21 HOH HOH . N 4 HOH B 2 23 23 HOH HOH . N 4 HOH B 3 29 29 HOH HOH . O 4 HOH C 1 6 6 HOH HOH . O 4 HOH C 2 8 8 HOH HOH . O 4 HOH C 3 16 16 HOH HOH . O 4 HOH C 4 38 38 HOH HOH . P 4 HOH D 1 37 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BMB . . . L 3 -35.715 -61.536 66.706 1 264.74 ? C BMB 600 D 1 HETATM 2 N N BMB . . . L 3 -36.283 -62.442 68.997 1 101.6 ? N BMB 600 D 1 HETATM 3 O O BMB . . . L 3 -35.726 -60.359 67.077 1 112.3 ? O BMB 600 D 1 HETATM 4 C CA BMB . . . L 3 -36.353 -62.663 67.533 1 204.32 ? CA BMB 600 D 1 HETATM 5 C CB BMB . . . L 3 -37.772 -62.962 67.033 1 239.52 ? CB BMB 600 D 1 HETATM 6 C CAA BMB . . . L 3 -37.74 -63.769 65.724 1 86.73 ? CAA BMB 600 D 1 HETATM 7 C CAB BMB . . . L 3 -37.094 -61.297 69.455 1 129.16 ? CAB BMB 600 D 1 HETATM 8 O OAD BMB . . . L 3 -32.573 -62.666 61.023 1 78.71 ? OAD BMB 600 D 1 HETATM 9 O OAE BMB . . . L 3 -34.625 -62.795 62.941 1 83.05 ? OAE BMB 600 D 1 HETATM 10 C CAF BMB . . . L 3 -33.347 -58.495 73.177 1 117.88 ? CAF BMB 600 D 1 HETATM 11 C CAG BMB . . . L 3 -33.994 -67.523 58.649 1 96.61 ? CAG BMB 600 D 1 HETATM 12 C CAH BMB . . . L 3 -28.279 -63.011 58.297 1 234.45 ? CAH BMB 600 D 1 HETATM 13 C CAI BMB . . . L 3 -31.98 -58.784 73.213 1 237.7 ? CAI BMB 600 D 1 HETATM 14 C CAJ BMB . . . L 3 -34.047 -58.659 71.978 1 256.17 ? CAJ BMB 600 D 1 HETATM 15 C CAK BMB . . . L 3 -33.858 -66.706 59.773 1 163.66 ? CAK BMB 600 D 1 HETATM 16 C CAL BMB . . . L 3 -33.677 -67.027 57.384 1 62.41 ? CAL BMB 600 D 1 HETATM 17 C CAM BMB . . . L 3 -29.085 -62.042 58.901 1 247.25 ? CAM BMB 600 D 1 HETATM 18 C CAN BMB . . . L 3 -28.87 -64.109 57.669 1 198.78 ? CAN BMB 600 D 1 HETATM 19 C CAO BMB . . . L 3 -31.321 -59.232 72.062 1 238.41 ? CAO BMB 600 D 1 HETATM 20 C CAP BMB . . . L 3 -33.388 -59.105 70.825 1 274.26 ? CAP BMB 600 D 1 HETATM 21 C CAQ BMB . . . L 3 -33.417 -65.389 59.634 1 89.54 ? CAQ BMB 600 D 1 HETATM 22 C CAR BMB . . . L 3 -33.241 -65.71 57.245 1 118.43 ? CAR BMB 600 D 1 HETATM 23 C CAS BMB . . . L 3 -30.48 -62.164 58.871 1 88.02 ? CAS BMB 600 D 1 HETATM 24 C CAT BMB . . . L 3 -30.262 -64.225 57.638 1 189.44 ? CAT BMB 600 D 1 HETATM 25 C CAV BMB . . . L 3 -31.968 -60.113 67.308 1 245.26 ? CAV BMB 600 D 1 HETATM 26 C CAW BMB . . . L 3 -32.455 -61.086 66.214 1 75.63 ? CAW BMB 600 D 1 HETATM 27 C CAX BMB . . . L 3 -32.348 -59.934 63.932 1 103.98 ? CAX BMB 600 D 1 HETATM 28 C CAY BMB . . . L 3 -33.032 -58.841 63.093 1 84.28 ? CAY BMB 600 D 1 HETATM 29 C CAZ BMB . . . L 3 -33.855 -58.882 60.741 1 121.89 ? CAZ BMB 600 D 1 HETATM 30 C CBA BMB . . . L 3 -34.521 -59.935 59.866 1 64.33 ? CBA BMB 600 D 1 HETATM 31 C CBB BMB . . . L 3 -31.26 -59.891 69.602 1 268.13 ? CBB BMB 600 D 1 HETATM 32 N NBD BMB . . . L 3 -32.097 -60.682 68.67 1 101.8 ? NBD BMB 600 D 1 HETATM 33 N NBE BMB . . . L 3 -35.17 -61.958 65.565 1 69.53 ? NBE BMB 600 D 1 HETATM 34 N NBF BMB . . . L 3 -33.467 -62.491 58.94 1 234.96 ? NBF BMB 600 D 1 HETATM 35 C CBH BMB . . . L 3 -33.39 -62.195 60.24 1 111.29 ? CBH BMB 600 D 1 HETATM 36 C CBI BMB . . . L 3 -34.483 -61.588 63.162 1 78.13 ? CBI BMB 600 D 1 HETATM 37 C CBJ BMB . . . L 3 -32.021 -59.407 70.861 1 284.1 ? CBJ BMB 600 D 1 HETATM 38 C CBK BMB . . . L 3 -33.091 -64.893 58.369 1 236.89 ? CBK BMB 600 D 1 HETATM 39 C CBL BMB . . . L 3 -31.079 -63.273 58.265 1 210.87 ? CBL BMB 600 D 1 HETATM 40 C CBM BMB . . . L 3 -33.238 -60.34 65.108 1 88 ? CBM BMB 600 D 1 HETATM 41 C CBO BMB . . . L 3 -34.19 -59.302 62.174 1 211.94 ? CBO BMB 600 D 1 HETATM 42 C CBP BMB . . . L 3 -34.46 -61.209 60.714 1 87.83 ? CBP BMB 600 D 1 HETATM 43 C CBQ BMB . . . L 3 -34.508 -61.055 64.61 1 142.52 ? CBQ BMB 600 D 1 HETATM 44 C CBR BMB . . . L 3 -32.617 -63.443 58.191 1 94.41 ? CBR BMB 600 D 1 HETATM 45 N NBS BMB . . . L 3 -34.343 -60.769 62.118 1 125.52 ? NBS BMB 600 D 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #