data_3OZC # _model_server_result.job_id l0BR0tkN7t1tfEfXvWZ85A _model_server_result.datetime_utc '2024-11-23 00:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ozc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":284}' # _entry.id 3OZC # _exptl.entry_id 3OZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.902 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OZC _cell.length_a 123.252 _cell.length_b 123.252 _cell.length_c 44.879 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 61.626 -106.739363 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 123.252 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H20 Cl N5 O S' _chem_comp.formula_weight 389.902 _chem_comp.id 4CT _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 4CT doub 1 n y N1 C6 4CT sing 2 n y CL1 C11 4CT sing 3 n n C2 N3 4CT sing 4 n y N3 C4 4CT doub 5 n y C4 C5 4CT sing 6 n y C4 C9 4CT sing 7 n y C5 C6 4CT doub 8 n y C5 N7 4CT sing 9 n y C6 N6 4CT sing 10 n n N7 C8 4CT sing 11 n y C8 C9 4CT doub 12 n y C9 C10 4CT sing 13 n n C1' N1' 4CT sing 14 n n C1' C4' 4CT sing 15 n n N1' C10 4CT sing 16 n n N1' C2' 4CT sing 17 n n C11 C13 4CT doub 18 n y C11 C9' 4CT sing 19 n y C13 C14 4CT sing 20 n y C14 C7' 4CT doub 21 n y C2' C3' 4CT sing 22 n n C3' O3' 4CT sing 23 n n C3' C4' 4CT sing 24 n n C4' C5' 4CT sing 25 n n C5' S6' 4CT sing 26 n n S6' C7' 4CT sing 27 n n C7' C8' 4CT sing 28 n y C8' C9' 4CT doub 29 n y C2 H2 4CT sing 30 n n N6 HN6 4CT sing 31 n n N6 HN6A 4CT sing 32 n n N7 HN7 4CT sing 33 n n C8 H8 4CT sing 34 n n C1' H1' 4CT sing 35 n n C1' "H1'A" 4CT sing 36 n n C10 H10 4CT sing 37 n n C10 H10A 4CT sing 38 n n C13 H13 4CT sing 39 n n C14 H14 4CT sing 40 n n C2' H2' 4CT sing 41 n n C2' "H2'A" 4CT sing 42 n n C3' H3' 4CT sing 43 n n O3' HO3' 4CT sing 44 n n C4' H4' 4CT sing 45 n n C5' H5' 4CT sing 46 n n C5' "H5'A" 4CT sing 47 n n C8' H8' 4CT sing 48 n n C9' H9' 4CT sing 49 n n # _atom_sites.entry_id 3OZC _atom_sites.fract_transf_matrix[1][1] 0.008113 _atom_sites.fract_transf_matrix[1][2] 0.004684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4CT A 1 284 1 4CT 4CT . C 3 PO4 A 1 285 2 PO4 PO4 . D 4 HOH A 1 286 1 HOH HOH . D 4 HOH A 2 287 2 HOH HOH . D 4 HOH A 3 288 3 HOH HOH . D 4 HOH A 4 289 4 HOH HOH . D 4 HOH A 5 290 5 HOH HOH . D 4 HOH A 6 291 6 HOH HOH . D 4 HOH A 7 292 7 HOH HOH . D 4 HOH A 8 293 8 HOH HOH . D 4 HOH A 9 294 9 HOH HOH . D 4 HOH A 10 295 10 HOH HOH . D 4 HOH A 11 296 11 HOH HOH . D 4 HOH A 12 297 12 HOH HOH . D 4 HOH A 13 298 13 HOH HOH . D 4 HOH A 14 299 14 HOH HOH . D 4 HOH A 15 300 15 HOH HOH . D 4 HOH A 16 301 16 HOH HOH . D 4 HOH A 17 302 17 HOH HOH . D 4 HOH A 18 303 18 HOH HOH . D 4 HOH A 19 304 19 HOH HOH . D 4 HOH A 20 305 20 HOH HOH . D 4 HOH A 21 306 21 HOH HOH . D 4 HOH A 22 307 22 HOH HOH . D 4 HOH A 23 308 23 HOH HOH . D 4 HOH A 24 309 24 HOH HOH . D 4 HOH A 25 310 25 HOH HOH . D 4 HOH A 26 311 27 HOH HOH . D 4 HOH A 27 312 28 HOH HOH . D 4 HOH A 28 313 30 HOH HOH . D 4 HOH A 29 314 31 HOH HOH . D 4 HOH A 30 315 32 HOH HOH . D 4 HOH A 31 316 33 HOH HOH . D 4 HOH A 32 317 34 HOH HOH . D 4 HOH A 33 318 36 HOH HOH . D 4 HOH A 34 319 37 HOH HOH . D 4 HOH A 35 320 38 HOH HOH . D 4 HOH A 36 321 39 HOH HOH . D 4 HOH A 37 322 40 HOH HOH . D 4 HOH A 38 323 41 HOH HOH . D 4 HOH A 39 324 42 HOH HOH . D 4 HOH A 40 325 43 HOH HOH . D 4 HOH A 41 326 44 HOH HOH . D 4 HOH A 42 327 45 HOH HOH . D 4 HOH A 43 328 46 HOH HOH . D 4 HOH A 44 329 47 HOH HOH . D 4 HOH A 45 330 48 HOH HOH . D 4 HOH A 46 331 49 HOH HOH . D 4 HOH A 47 332 50 HOH HOH . D 4 HOH A 48 333 51 HOH HOH . D 4 HOH A 49 334 52 HOH HOH . D 4 HOH A 50 335 53 HOH HOH . D 4 HOH A 51 336 54 HOH HOH . D 4 HOH A 52 337 55 HOH HOH . D 4 HOH A 53 338 57 HOH HOH . D 4 HOH A 54 339 58 HOH HOH . D 4 HOH A 55 340 59 HOH HOH . D 4 HOH A 56 341 60 HOH HOH . D 4 HOH A 57 342 61 HOH HOH . D 4 HOH A 58 343 62 HOH HOH . D 4 HOH A 59 344 63 HOH HOH . D 4 HOH A 60 345 64 HOH HOH . D 4 HOH A 61 346 65 HOH HOH . D 4 HOH A 62 347 66 HOH HOH . D 4 HOH A 63 348 67 HOH HOH . D 4 HOH A 64 349 68 HOH HOH . D 4 HOH A 65 350 69 HOH HOH . D 4 HOH A 66 351 70 HOH HOH . D 4 HOH A 67 352 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 4CT . . . B 2 63.911 -19.817 3.455 1 17.06 ? N1 4CT 284 A 1 HETATM 2 CL CL1 4CT . . . B 2 63.614 -9.98 13.221 1 42.24 ? CL1 4CT 284 A 1 HETATM 3 C C2 4CT . . . B 2 63.131 -20.189 4.494 1 15.16 ? C2 4CT 284 A 1 HETATM 4 N N3 4CT . . . B 2 62.386 -19.269 5.123 1 14.94 ? N3 4CT 284 A 1 HETATM 5 C C4 4CT . . . B 2 62.43 -17.972 4.712 1 13.46 ? C4 4CT 284 A 1 HETATM 6 C C5 4CT . . . B 2 63.197 -17.568 3.637 1 14.54 ? C5 4CT 284 A 1 HETATM 7 C C6 4CT . . . B 2 63.96 -18.541 2.993 1 14.73 ? C6 4CT 284 A 1 HETATM 8 N N6 4CT . . . B 2 64.759 -18.236 1.939 1 15.34 ? N6 4CT 284 A 1 HETATM 9 N N7 4CT . . . B 2 63.009 -16.232 3.497 1 13.85 ? N7 4CT 284 A 1 HETATM 10 C C8 4CT . . . B 2 62.125 -15.8 4.429 1 13.5 ? C8 4CT 284 A 1 HETATM 11 C C9 4CT . . . B 2 61.746 -16.88 5.227 1 11.05 ? C9 4CT 284 A 1 HETATM 12 C C1' 4CT . . . B 2 62.087 -15.446 8.02 1 16.7 ? C1' 4CT 284 A 1 HETATM 13 N N1' 4CT . . . B 2 61.23 -16.622 7.778 1 15.51 ? N1' 4CT 284 A 1 HETATM 14 C C10 4CT . . . B 2 60.757 -16.829 6.369 1 13.74 ? C10 4CT 284 A 1 HETATM 15 C C11 4CT . . . B 2 63.985 -11.191 11.954 1 31.16 ? C11 4CT 284 A 1 HETATM 16 C C13 4CT . . . B 2 64.227 -10.739 10.66 1 29.46 ? C13 4CT 284 A 1 HETATM 17 C C14 4CT . . . B 2 64.494 -11.646 9.649 1 26.02 ? C14 4CT 284 A 1 HETATM 18 C C2' 4CT . . . B 2 61.977 -17.781 8.287 1 16.21 ? C2' 4CT 284 A 1 HETATM 19 C C3' 4CT . . . B 2 62.5 -17.24 9.613 1 17.28 ? C3' 4CT 284 A 1 HETATM 20 O O3' 4CT . . . B 2 61.429 -17.324 10.555 1 17.42 ? O3' 4CT 284 A 1 HETATM 21 C C4' 4CT . . . B 2 62.842 -15.8 9.304 1 17.34 ? C4' 4CT 284 A 1 HETATM 22 C C5' 4CT . . . B 2 64.352 -15.686 9.083 1 17.97 ? C5' 4CT 284 A 1 HETATM 23 S S6' 4CT . . . B 2 64.869 -14.059 8.673 1 22.28 ? S6' 4CT 284 A 1 HETATM 24 C C7' 4CT . . . B 2 64.543 -13.006 9.947 1 24.9 ? C7' 4CT 284 A 1 HETATM 25 C C8' 4CT . . . B 2 64.313 -13.469 11.246 1 26.11 ? C8' 4CT 284 A 1 HETATM 26 C C9' 4CT . . . B 2 64.023 -12.55 12.259 1 29.3 ? C9' 4CT 284 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #