data_3OZD
#
_model_server_result.job_id            Q2Pp4w2r8_KmYfQPsSLlvQ 
_model_server_result.datetime_utc      '2025-02-18 08:34:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ozd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":284}' 
#
_entry.id    3OZD 
#
_exptl.entry_id    3OZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              389.902 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OZD 
_cell.length_a            121.539 
_cell.length_b            121.539 
_cell.length_c            87.661 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2,3 
B,D,F 2 1,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121.539 0 0 
5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 60.7695 105.255862 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 145 A CYS 145 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf2 B SG CYS 145 B CYS 145 1_555 B SG CYS 211 B CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'C18 H20 Cl N5 O S' 
_chem_comp.formula_weight    389.902 
_chem_comp.id                4CT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 4CT doub 1 n y 
N1 C6 4CT sing 2 n y 
CL1 C11 4CT sing 3 n n 
C2 N3 4CT sing 4 n y 
N3 C4 4CT doub 5 n y 
C4 C5 4CT sing 6 n y 
C4 C9 4CT sing 7 n y 
C5 C6 4CT doub 8 n y 
C5 N7 4CT sing 9 n y 
C6 N6 4CT sing 10 n n 
N7 C8 4CT sing 11 n y 
C8 C9 4CT doub 12 n y 
C9 C10 4CT sing 13 n n 
C1' N1' 4CT sing 14 n n 
C1' C4' 4CT sing 15 n n 
N1' C10 4CT sing 16 n n 
N1' C2' 4CT sing 17 n n 
C11 C13 4CT doub 18 n y 
C11 C9' 4CT sing 19 n y 
C13 C14 4CT sing 20 n y 
C14 C7' 4CT doub 21 n y 
C2' C3' 4CT sing 22 n n 
C3' O3' 4CT sing 23 n n 
C3' C4' 4CT sing 24 n n 
C4' C5' 4CT sing 25 n n 
C5' S6' 4CT sing 26 n n 
S6' C7' 4CT sing 27 n n 
C7' C8' 4CT sing 28 n y 
C8' C9' 4CT doub 29 n y 
C2 H2 4CT sing 30 n n 
N6 HN6 4CT sing 31 n n 
N6 HN6A 4CT sing 32 n n 
N7 HN7 4CT sing 33 n n 
C8 H8 4CT sing 34 n n 
C1' H1' 4CT sing 35 n n 
C1' "H1'A" 4CT sing 36 n n 
C10 H10 4CT sing 37 n n 
C10 H10A 4CT sing 38 n n 
C13 H13 4CT sing 39 n n 
C14 H14 4CT sing 40 n n 
C2' H2' 4CT sing 41 n n 
C2' "H2'A" 4CT sing 42 n n 
C3' H3' 4CT sing 43 n n 
O3' HO3' 4CT sing 44 n n 
C4' H4' 4CT sing 45 n n 
C5' H5' 4CT sing 46 n n 
C5' "H5'A" 4CT sing 47 n n 
C8' H8' 4CT sing 48 n n 
C9' H9' 4CT sing 49 n n 
#
_atom_sites.entry_id                     3OZD 
_atom_sites.fract_transf_matrix[1][1]    0.008228 
_atom_sites.fract_transf_matrix[1][2]    0.00475 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011408 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4CT A 1 284 1 4CT 4CT . 
D 2 4CT B 1 284 1 4CT 4CT . 
E 3 HOH A 1 285 1 HOH HOH . 
E 3 HOH A 2 286 3 HOH HOH . 
E 3 HOH A 3 287 4 HOH HOH . 
E 3 HOH A 4 288 5 HOH HOH . 
E 3 HOH A 5 289 6 HOH HOH . 
E 3 HOH A 6 290 11 HOH HOH . 
E 3 HOH A 7 291 14 HOH HOH . 
E 3 HOH A 8 292 15 HOH HOH . 
E 3 HOH A 9 293 17 HOH HOH . 
E 3 HOH A 10 294 20 HOH HOH . 
E 3 HOH A 11 295 23 HOH HOH . 
E 3 HOH A 12 296 24 HOH HOH . 
E 3 HOH A 13 297 25 HOH HOH . 
E 3 HOH A 14 298 26 HOH HOH . 
E 3 HOH A 15 299 28 HOH HOH . 
E 3 HOH A 16 300 30 HOH HOH . 
E 3 HOH A 17 301 32 HOH HOH . 
E 3 HOH A 18 302 33 HOH HOH . 
E 3 HOH A 19 303 36 HOH HOH . 
E 3 HOH A 20 304 41 HOH HOH . 
E 3 HOH A 21 305 46 HOH HOH . 
E 3 HOH A 22 306 47 HOH HOH . 
E 3 HOH A 23 307 48 HOH HOH . 
E 3 HOH A 24 308 55 HOH HOH . 
E 3 HOH A 25 309 59 HOH HOH . 
E 3 HOH A 26 310 60 HOH HOH . 
E 3 HOH A 27 311 62 HOH HOH . 
E 3 HOH A 28 312 63 HOH HOH . 
E 3 HOH A 29 313 64 HOH HOH . 
E 3 HOH A 30 314 66 HOH HOH . 
E 3 HOH A 31 315 68 HOH HOH . 
E 3 HOH A 32 316 76 HOH HOH . 
E 3 HOH A 33 317 78 HOH HOH . 
E 3 HOH A 34 318 81 HOH HOH . 
E 3 HOH A 35 319 83 HOH HOH . 
E 3 HOH A 36 320 84 HOH HOH . 
E 3 HOH A 37 321 85 HOH HOH . 
E 3 HOH A 38 322 86 HOH HOH . 
E 3 HOH A 39 323 87 HOH HOH . 
E 3 HOH A 40 324 90 HOH HOH . 
E 3 HOH A 41 325 92 HOH HOH . 
E 3 HOH A 42 326 93 HOH HOH . 
E 3 HOH A 43 327 95 HOH HOH . 
E 3 HOH A 44 328 100 HOH HOH . 
E 3 HOH A 45 329 102 HOH HOH . 
E 3 HOH A 46 330 103 HOH HOH . 
E 3 HOH A 47 331 105 HOH HOH . 
E 3 HOH A 48 332 106 HOH HOH . 
E 3 HOH A 49 333 107 HOH HOH . 
E 3 HOH A 50 334 108 HOH HOH . 
E 3 HOH A 51 335 109 HOH HOH . 
E 3 HOH A 52 336 112 HOH HOH . 
E 3 HOH A 53 337 114 HOH HOH . 
E 3 HOH A 54 338 115 HOH HOH . 
E 3 HOH A 55 339 116 HOH HOH . 
F 3 HOH B 1 285 2 HOH HOH . 
F 3 HOH B 2 286 7 HOH HOH . 
F 3 HOH B 3 287 8 HOH HOH . 
F 3 HOH B 4 288 9 HOH HOH . 
F 3 HOH B 5 289 10 HOH HOH . 
F 3 HOH B 6 290 12 HOH HOH . 
F 3 HOH B 7 291 13 HOH HOH . 
F 3 HOH B 8 292 16 HOH HOH . 
F 3 HOH B 9 293 18 HOH HOH . 
F 3 HOH B 10 294 19 HOH HOH . 
F 3 HOH B 11 295 21 HOH HOH . 
F 3 HOH B 12 296 22 HOH HOH . 
F 3 HOH B 13 297 27 HOH HOH . 
F 3 HOH B 14 298 29 HOH HOH . 
F 3 HOH B 15 299 31 HOH HOH . 
F 3 HOH B 16 300 34 HOH HOH . 
F 3 HOH B 17 301 35 HOH HOH . 
F 3 HOH B 18 302 37 HOH HOH . 
F 3 HOH B 19 303 38 HOH HOH . 
F 3 HOH B 20 304 39 HOH HOH . 
F 3 HOH B 21 305 40 HOH HOH . 
F 3 HOH B 22 306 42 HOH HOH . 
F 3 HOH B 23 307 43 HOH HOH . 
F 3 HOH B 24 308 44 HOH HOH . 
F 3 HOH B 25 309 45 HOH HOH . 
F 3 HOH B 26 310 49 HOH HOH . 
F 3 HOH B 27 311 50 HOH HOH . 
F 3 HOH B 28 312 51 HOH HOH . 
F 3 HOH B 29 313 52 HOH HOH . 
F 3 HOH B 30 314 53 HOH HOH . 
F 3 HOH B 31 315 54 HOH HOH . 
F 3 HOH B 32 316 56 HOH HOH . 
F 3 HOH B 33 317 57 HOH HOH . 
F 3 HOH B 34 318 58 HOH HOH . 
F 3 HOH B 35 319 65 HOH HOH . 
F 3 HOH B 36 320 67 HOH HOH . 
F 3 HOH B 37 321 69 HOH HOH . 
F 3 HOH B 38 322 70 HOH HOH . 
F 3 HOH B 39 323 71 HOH HOH . 
F 3 HOH B 40 324 72 HOH HOH . 
F 3 HOH B 41 325 74 HOH HOH . 
F 3 HOH B 42 326 77 HOH HOH . 
F 3 HOH B 43 327 79 HOH HOH . 
F 3 HOH B 44 328 88 HOH HOH . 
F 3 HOH B 45 329 91 HOH HOH . 
F 3 HOH B 46 330 94 HOH HOH . 
F 3 HOH B 47 331 98 HOH HOH . 
F 3 HOH B 48 332 99 HOH HOH . 
F 3 HOH B 49 333 101 HOH HOH . 
F 3 HOH B 50 334 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 4CT . . . D 2 48.091 25.412 -12.014 1 29.42 ? N1 4CT 284 B 1 
HETATM 2 CL CL1 4CT . . . D 2 38.563 24.739 -20.703 1 66.63 ? CL1 4CT 284 B 1 
HETATM 3 C C2 4CT . . . D 2 47.981 26.238 -13.067 1 30.65 ? C2 4CT 284 B 1 
HETATM 4 N N3 4CT . . . D 2 46.784 26.478 -13.636 1 33.22 ? N3 4CT 284 B 1 
HETATM 5 C C4 4CT . . . D 2 45.676 25.887 -13.126 1 30.92 ? C4 4CT 284 B 1 
HETATM 6 C C5 4CT . . . D 2 45.723 25.055 -12.05 1 29.16 ? C5 4CT 284 B 1 
HETATM 7 C C6 4CT . . . D 2 46.979 24.821 -11.477 1 29.22 ? C6 4CT 284 B 1 
HETATM 8 N N6 4CT . . . D 2 47.112 24.025 -10.402 1 26.99 ? N6 4CT 284 B 1 
HETATM 9 N N7 4CT . . . D 2 44.452 24.641 -11.805 1 30.4 ? N7 4CT 284 B 1 
HETATM 10 C C8 4CT . . . D 2 43.623 25.202 -12.708 1 34.45 ? C8 4CT 284 B 1 
HETATM 11 C C9 4CT . . . D 2 44.373 25.992 -13.575 1 34.83 ? C9 4CT 284 B 1 
HETATM 12 C C1' 4CT . . . D 2 43.231 24.967 -16.216 1 41.44 ? C1' 4CT 284 B 1 
HETATM 13 N N1' 4CT . . . D 2 43.874 26.292 -16.069 1 39.23 ? N1' 4CT 284 B 1 
HETATM 14 C C10 4CT . . . D 2 43.831 26.832 -14.71 1 35.71 ? C10 4CT 284 B 1 
HETATM 15 C C11 4CT . . . D 2 39.826 23.847 -19.78 1 62.03 ? C11 4CT 284 B 1 
HETATM 16 C C13 4CT . . . D 2 40.988 23.375 -20.406 1 61.07 ? C13 4CT 284 B 1 
HETATM 17 C C14 4CT . . . D 2 41.962 22.702 -19.664 1 58.37 ? C14 4CT 284 B 1 
HETATM 18 C C2' 4CT . . . D 2 45.244 26.23 -16.592 1 40.71 ? C2' 4CT 284 B 1 
HETATM 19 C C3' 4CT . . . D 2 45.185 25.146 -17.656 1 43.74 ? C3' 4CT 284 B 1 
HETATM 20 O O3' 4CT . . . D 2 45.096 25.82 -18.913 1 45.27 ? O3' 4CT 284 B 1 
HETATM 21 C C4' 4CT . . . D 2 43.946 24.291 -17.382 1 44.7 ? C4' 4CT 284 B 1 
HETATM 22 C C5' 4CT . . . D 2 44.265 22.829 -17.019 1 47.67 ? C5' 4CT 284 B 1 
HETATM 23 S S6' 4CT . . . D 2 42.934 21.708 -17.357 1 53.27 ? S6' 4CT 284 B 1 
HETATM 24 C C7' 4CT . . . D 2 41.766 22.498 -18.301 1 56.86 ? C7' 4CT 284 B 1 
HETATM 25 C C8' 4CT . . . D 2 40.611 22.97 -17.684 1 59.08 ? C8' 4CT 284 B 1 
HETATM 26 C C9' 4CT . . . D 2 39.641 23.646 -18.415 1 61.38 ? C9' 4CT 284 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#