data_3OZV # _model_server_result.job_id 2gkO-Oz3ufNqux5URVRnJQ _model_server_result.datetime_utc '2024-12-02 14:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ozv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":404}' # _entry.id 3OZV # _exptl.entry_id 3OZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OZV _cell.length_a 87.22 _cell.length_b 87.22 _cell.length_c 291.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,J,K,M 1 1 A,C,D,E,F,L 2 1 B,G,H,I,J,K,M 3 1 A,C,D,E,F,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_454 -x-1/2,y+1/2,-z-1/4 -1 0 0 0 1 0 0 0 -1 -43.61 43.61 -72.815 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 B HIS 85 1_555 C FE HEM . B HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 C FE HEM . B HEM 404 1_555 F N19 ECN . B ECN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 B NE2 HIS 85 A HIS 85 1_555 G FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 G FE HEM . A HEM 404 1_555 K N19 ECN . A ECN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 386 n n CHA C4D HEM doub 387 n n CHA HHA HEM sing 388 n n CHB C4A HEM sing 389 n n CHB C1B HEM doub 390 n n CHB HHB HEM sing 391 n n CHC C4B HEM sing 392 n n CHC C1C HEM doub 393 n n CHC HHC HEM sing 394 n n CHD C4C HEM doub 395 n n CHD C1D HEM sing 396 n n CHD HHD HEM sing 397 n n C1A C2A HEM doub 398 n y C1A NA HEM sing 399 n y C2A C3A HEM sing 400 n y C2A CAA HEM sing 401 n n C3A C4A HEM doub 402 n y C3A CMA HEM sing 403 n n C4A NA HEM sing 404 n y CMA HMA HEM sing 405 n n CMA HMAA HEM sing 406 n n CMA HMAB HEM sing 407 n n CAA CBA HEM sing 408 n n CAA HAA HEM sing 409 n n CAA HAAA HEM sing 410 n n CBA CGA HEM sing 411 n n CBA HBA HEM sing 412 n n CBA HBAA HEM sing 413 n n CGA O1A HEM doub 414 n n CGA O2A HEM sing 415 n n C1B C2B HEM sing 416 n n C1B NB HEM sing 417 n n C2B C3B HEM doub 418 n n C2B CMB HEM sing 419 n n C3B C4B HEM sing 420 n n C3B CAB HEM sing 421 n n C4B NB HEM doub 422 n n CMB HMB HEM sing 423 n n CMB HMBA HEM sing 424 n n CMB HMBB HEM sing 425 n n CAB CBB HEM doub 426 n n CAB HAB HEM sing 427 n n CBB HBB HEM sing 428 n n CBB HBBA HEM sing 429 n n C1C C2C HEM sing 430 n y C1C NC HEM sing 431 n y C2C C3C HEM doub 432 n y C2C CMC HEM sing 433 n n C3C C4C HEM sing 434 n y C3C CAC HEM sing 435 n n C4C NC HEM sing 436 n y CMC HMC HEM sing 437 n n CMC HMCA HEM sing 438 n n CMC HMCB HEM sing 439 n n CAC CBC HEM doub 440 n n CAC HAC HEM sing 441 n n CBC HBC HEM sing 442 n n CBC HBCA HEM sing 443 n n C1D C2D HEM sing 444 n n C1D ND HEM doub 445 n n C2D C3D HEM doub 446 n n C2D CMD HEM sing 447 n n C3D C4D HEM sing 448 n n C3D CAD HEM sing 449 n n C4D ND HEM sing 450 n n CMD HMD HEM sing 451 n n CMD HMDA HEM sing 452 n n CMD HMDB HEM sing 453 n n CAD CBD HEM sing 454 n n CAD HAD HEM sing 455 n n CAD HADA HEM sing 456 n n CBD CGD HEM sing 457 n n CBD HBD HEM sing 458 n n CBD HBDA HEM sing 459 n n CGD O1D HEM doub 460 n n CGD O2D HEM sing 461 n n O2A H2A HEM sing 462 n n O2D H2D HEM sing 463 n n FE NA HEM sing 464 n n FE NB HEM sing 465 n n FE NC HEM sing 466 n n FE ND HEM sing 467 n n # _atom_sites.entry_id 3OZV _atom_sites.fract_transf_matrix[1][1] 0.011465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM B 1 404 404 HEM HEM . D 3 FAD B 1 405 405 FAD FAD . E 4 DGG B 1 406 406 DGG DGG . F 5 ECN B 1 411 411 ECN ECN . G 2 HEM A 1 404 404 HEM HEM . H 3 FAD A 1 405 405 FAD FAD . I 4 DGG A 1 406 406 DGG DGG . J 6 PO4 A 1 407 407 PO4 PO4 . K 5 ECN A 1 411 411 ECN ECN . L 7 HOH B 1 407 407 HOH HOH . L 7 HOH B 2 408 408 HOH HOH . L 7 HOH B 3 409 409 HOH HOH . L 7 HOH B 4 410 410 HOH HOH . L 7 HOH B 5 412 412 HOH HOH . L 7 HOH B 6 413 413 HOH HOH . L 7 HOH B 7 414 414 HOH HOH . L 7 HOH B 8 415 415 HOH HOH . L 7 HOH B 9 416 416 HOH HOH . L 7 HOH B 10 417 417 HOH HOH . L 7 HOH B 11 418 418 HOH HOH . L 7 HOH B 12 419 419 HOH HOH . L 7 HOH B 13 420 420 HOH HOH . L 7 HOH B 14 421 421 HOH HOH . L 7 HOH B 15 422 422 HOH HOH . L 7 HOH B 16 423 423 HOH HOH . L 7 HOH B 17 424 424 HOH HOH . L 7 HOH B 18 425 425 HOH HOH . L 7 HOH B 19 426 426 HOH HOH . L 7 HOH B 20 427 427 HOH HOH . L 7 HOH B 21 428 428 HOH HOH . L 7 HOH B 22 429 429 HOH HOH . L 7 HOH B 23 430 430 HOH HOH . L 7 HOH B 24 431 431 HOH HOH . L 7 HOH B 25 432 432 HOH HOH . L 7 HOH B 26 433 433 HOH HOH . L 7 HOH B 27 434 434 HOH HOH . L 7 HOH B 28 435 435 HOH HOH . L 7 HOH B 29 436 436 HOH HOH . L 7 HOH B 30 437 437 HOH HOH . L 7 HOH B 31 438 438 HOH HOH . L 7 HOH B 32 439 439 HOH HOH . L 7 HOH B 33 440 440 HOH HOH . L 7 HOH B 34 441 441 HOH HOH . L 7 HOH B 35 442 442 HOH HOH . L 7 HOH B 36 443 443 HOH HOH . L 7 HOH B 37 444 444 HOH HOH . L 7 HOH B 38 445 445 HOH HOH . L 7 HOH B 39 446 446 HOH HOH . L 7 HOH B 40 447 447 HOH HOH . L 7 HOH B 41 448 448 HOH HOH . L 7 HOH B 42 449 449 HOH HOH . L 7 HOH B 43 450 450 HOH HOH . L 7 HOH B 44 451 451 HOH HOH . L 7 HOH B 45 452 452 HOH HOH . L 7 HOH B 46 453 453 HOH HOH . L 7 HOH B 47 454 454 HOH HOH . L 7 HOH B 48 455 455 HOH HOH . L 7 HOH B 49 456 456 HOH HOH . L 7 HOH B 50 457 457 HOH HOH . L 7 HOH B 51 458 458 HOH HOH . L 7 HOH B 52 459 459 HOH HOH . L 7 HOH B 53 460 460 HOH HOH . L 7 HOH B 54 461 461 HOH HOH . L 7 HOH B 55 462 462 HOH HOH . L 7 HOH B 56 463 463 HOH HOH . L 7 HOH B 57 464 464 HOH HOH . L 7 HOH B 58 465 411 HOH HOH . M 7 HOH A 1 408 408 HOH HOH . M 7 HOH A 2 409 409 HOH HOH . M 7 HOH A 3 410 410 HOH HOH . M 7 HOH A 4 412 412 HOH HOH . M 7 HOH A 5 413 413 HOH HOH . M 7 HOH A 6 414 414 HOH HOH . M 7 HOH A 7 415 415 HOH HOH . M 7 HOH A 8 416 416 HOH HOH . M 7 HOH A 9 417 417 HOH HOH . M 7 HOH A 10 418 418 HOH HOH . M 7 HOH A 11 419 419 HOH HOH . M 7 HOH A 12 420 420 HOH HOH . M 7 HOH A 13 421 421 HOH HOH . M 7 HOH A 14 422 422 HOH HOH . M 7 HOH A 15 423 423 HOH HOH . M 7 HOH A 16 424 424 HOH HOH . M 7 HOH A 17 425 425 HOH HOH . M 7 HOH A 18 426 426 HOH HOH . M 7 HOH A 19 427 427 HOH HOH . M 7 HOH A 20 428 428 HOH HOH . M 7 HOH A 21 429 429 HOH HOH . M 7 HOH A 22 430 430 HOH HOH . M 7 HOH A 23 431 431 HOH HOH . M 7 HOH A 24 432 432 HOH HOH . M 7 HOH A 25 433 433 HOH HOH . M 7 HOH A 26 434 434 HOH HOH . M 7 HOH A 27 435 435 HOH HOH . M 7 HOH A 28 436 436 HOH HOH . M 7 HOH A 29 437 437 HOH HOH . M 7 HOH A 30 438 438 HOH HOH . M 7 HOH A 31 439 439 HOH HOH . M 7 HOH A 32 440 440 HOH HOH . M 7 HOH A 33 441 441 HOH HOH . M 7 HOH A 34 442 442 HOH HOH . M 7 HOH A 35 443 443 HOH HOH . M 7 HOH A 36 444 444 HOH HOH . M 7 HOH A 37 445 445 HOH HOH . M 7 HOH A 38 446 446 HOH HOH . M 7 HOH A 39 447 447 HOH HOH . M 7 HOH A 40 448 448 HOH HOH . M 7 HOH A 41 449 449 HOH HOH . M 7 HOH A 42 450 450 HOH HOH . M 7 HOH A 43 451 451 HOH HOH . M 7 HOH A 44 452 452 HOH HOH . M 7 HOH A 45 453 453 HOH HOH . M 7 HOH A 46 454 454 HOH HOH . M 7 HOH A 47 455 455 HOH HOH . M 7 HOH A 48 456 456 HOH HOH . M 7 HOH A 49 457 457 HOH HOH . M 7 HOH A 50 458 458 HOH HOH . M 7 HOH A 51 459 459 HOH HOH . M 7 HOH A 52 460 460 HOH HOH . M 7 HOH A 53 461 461 HOH HOH . M 7 HOH A 54 462 462 HOH HOH . M 7 HOH A 55 463 463 HOH HOH . M 7 HOH A 56 464 464 HOH HOH . M 7 HOH A 57 465 465 HOH HOH . M 7 HOH A 58 466 466 HOH HOH . M 7 HOH A 59 467 467 HOH HOH . M 7 HOH A 60 468 468 HOH HOH . M 7 HOH A 61 469 469 HOH HOH . M 7 HOH A 62 470 470 HOH HOH . M 7 HOH A 63 471 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 0.688 7.5 -23.864 1 34.36 ? CHA HEM 404 B 1 HETATM 2 C CHB HEM . . . C 2 -1.586 8.802 -27.921 1 36.66 ? CHB HEM 404 B 1 HETATM 3 C CHC HEM . . . C 2 -4.302 4.912 -27.738 1 27.42 ? CHC HEM 404 B 1 HETATM 4 C CHD HEM . . . C 2 -2.326 3.784 -23.415 1 30.53 ? CHD HEM 404 B 1 HETATM 5 C C1A HEM . . . C 2 0.287 8.192 -24.983 1 42.8 ? C1A HEM 404 B 1 HETATM 6 C C2A HEM . . . C 2 0.793 9.491 -25.369 1 44.89 ? C2A HEM 404 B 1 HETATM 7 C C3A HEM . . . C 2 0.17 9.867 -26.485 1 40.4 ? C3A HEM 404 B 1 HETATM 8 C C4A HEM . . . C 2 -0.764 8.812 -26.824 1 41.26 ? C4A HEM 404 B 1 HETATM 9 C CMA HEM . . . C 2 0.392 11.195 -27.256 1 34.41 ? CMA HEM 404 B 1 HETATM 10 C CAA HEM . . . C 2 1.885 10.279 -24.607 1 45.35 ? CAA HEM 404 B 1 HETATM 11 C CBA HEM . . . C 2 3.167 9.597 -25.117 1 54.65 ? CBA HEM 404 B 1 HETATM 12 C CGA HEM . . . C 2 4.436 10.178 -24.536 1 73.85 ? CGA HEM 404 B 1 HETATM 13 O O1A HEM . . . C 2 4.354 11.09 -23.652 1 80.2 ? O1A HEM 404 B 1 HETATM 14 O O2A HEM . . . C 2 5.529 9.713 -24.97 1 63.52 ? O2A HEM 404 B 1 HETATM 15 C C1B HEM . . . C 2 -2.521 7.854 -28.261 1 30.61 ? C1B HEM 404 B 1 HETATM 16 C C2B HEM . . . C 2 -3.37 7.903 -29.437 1 29.21 ? C2B HEM 404 B 1 HETATM 17 C C3B HEM . . . C 2 -4.149 6.811 -29.402 1 30.12 ? C3B HEM 404 B 1 HETATM 18 C C4B HEM . . . C 2 -3.794 6.083 -28.198 1 28.32 ? C4B HEM 404 B 1 HETATM 19 C CMB HEM . . . C 2 -3.269 9.062 -30.467 1 19.92 ? CMB HEM 404 B 1 HETATM 20 C CAB HEM . . . C 2 -5.25 6.355 -30.386 1 27.31 ? CAB HEM 404 B 1 HETATM 21 C CBB HEM . . . C 2 -5.403 6.972 -31.558 1 32.54 ? CBB HEM 404 B 1 HETATM 22 C C1C HEM . . . C 2 -3.947 4.277 -26.553 1 31.96 ? C1C HEM 404 B 1 HETATM 23 C C2C HEM . . . C 2 -4.463 2.996 -26.146 1 31.05 ? C2C HEM 404 B 1 HETATM 24 C C3C HEM . . . C 2 -3.948 2.668 -24.969 1 33.19 ? C3C HEM 404 B 1 HETATM 25 C C4C HEM . . . C 2 -3.061 3.742 -24.575 1 32.77 ? C4C HEM 404 B 1 HETATM 26 C CMC HEM . . . C 2 -5.458 2.14 -26.949 1 26.64 ? CMC HEM 404 B 1 HETATM 27 C CAC HEM . . . C 2 -4.275 1.339 -24.241 1 31.46 ? CAC HEM 404 B 1 HETATM 28 C CBC HEM . . . C 2 -4.272 1.231 -22.92 1 38.36 ? CBC HEM 404 B 1 HETATM 29 C C1D HEM . . . C 2 -1.352 4.687 -23.071 1 32.74 ? C1D HEM 404 B 1 HETATM 30 C C2D HEM . . . C 2 -0.603 4.738 -21.819 1 32.19 ? C2D HEM 404 B 1 HETATM 31 C C3D HEM . . . C 2 0.344 5.917 -21.945 1 37.05 ? C3D HEM 404 B 1 HETATM 32 C C4D HEM . . . C 2 0.06 6.448 -23.279 1 30.7 ? C4D HEM 404 B 1 HETATM 33 C CMD HEM . . . C 2 -0.754 3.826 -20.614 1 30.1 ? CMD HEM 404 B 1 HETATM 34 C CAD HEM . . . C 2 1.348 6.428 -20.88 1 31.55 ? CAD HEM 404 B 1 HETATM 35 C CBD HEM . . . C 2 0.715 7.593 -20.071 1 34.51 ? CBD HEM 404 B 1 HETATM 36 C CGD HEM . . . C 2 0.036 7.104 -18.806 1 43.23 ? CGD HEM 404 B 1 HETATM 37 O O1D HEM . . . C 2 0.196 5.911 -18.458 1 49.14 ? O1D HEM 404 B 1 HETATM 38 O O2D HEM . . . C 2 -0.697 7.868 -18.104 1 56.58 ? O2D HEM 404 B 1 HETATM 39 N NA HEM . . . C 2 -0.664 7.797 -25.902 1 38.06 ? NA HEM 404 B 1 HETATM 40 N NB HEM . . . C 2 -2.814 6.752 -27.539 1 30.38 ? NB HEM 404 B 1 HETATM 41 N NC HEM . . . C 2 -3.08 4.702 -25.566 1 29.43 ? NC HEM 404 B 1 HETATM 42 N ND HEM . . . C 2 -0.911 5.692 -23.892 1 32.82 ? ND HEM 404 B 1 HETATM 43 FE FE HEM . . . C 2 -1.89 6.196 -25.74 1 30.2 ? FE HEM 404 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #