data_3OZV # _model_server_result.job_id ahfW2X7uQmGjvjtDFhqAmQ _model_server_result.datetime_utc '2024-12-02 14:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ozv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":406}' # _entry.id 3OZV # _exptl.entry_id 3OZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.981 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OZV _cell.length_a 87.22 _cell.length_b 87.22 _cell.length_c 291.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,J,K,M 1 1 A,C,D,E,F,L 2 1 B,G,H,I,J,K,M 3 1 A,C,D,E,F,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_454 -x-1/2,y+1/2,-z-1/4 -1 0 0 0 1 0 0 0 -1 -43.61 43.61 -72.815 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 B HIS 85 1_555 C FE HEM . B HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 C FE HEM . B HEM 404 1_555 F N19 ECN . B ECN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc3 B NE2 HIS 85 A HIS 85 1_555 G FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 G FE HEM . A HEM 404 1_555 K N19 ECN . A ECN 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C39 H75 O10 P' _chem_comp.formula_weight 734.981 _chem_comp.id DGG _chem_comp.mon_nstd_flag . _chem_comp.name 1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 DGG sing 83 n n C16 H161 DGG sing 84 n n C16 H162 DGG sing 85 n n C16 H163 DGG sing 86 n n C15 C14 DGG sing 87 n n C15 H151 DGG sing 88 n n C15 H152 DGG sing 89 n n C14 C13 DGG sing 90 n n C14 H141 DGG sing 91 n n C14 H142 DGG sing 92 n n C13 C12 DGG sing 93 n n C13 H131 DGG sing 94 n n C13 H132 DGG sing 95 n n C12 C11 DGG sing 96 n n C12 H121 DGG sing 97 n n C12 H122 DGG sing 98 n n C11 C10 DGG sing 99 n n C11 H111 DGG sing 100 n n C11 H112 DGG sing 101 n n C10 C9 DGG sing 102 n n C10 H101 DGG sing 103 n n C10 H102 DGG sing 104 n n C9 C8 DGG sing 105 n n C9 HC91 DGG sing 106 n n C9 HC92 DGG sing 107 n n C8 C7 DGG sing 108 n n C8 HC81 DGG sing 109 n n C8 HC82 DGG sing 110 n n C7 C6 DGG sing 111 n n C7 HC71 DGG sing 112 n n C7 HC72 DGG sing 113 n n C6 C5 DGG sing 114 n n C6 HC61 DGG sing 115 n n C6 HC62 DGG sing 116 n n C5 C4 DGG sing 117 n n C5 HC51 DGG sing 118 n n C5 HC52 DGG sing 119 n n C4 C3 DGG sing 120 n n C4 HC41 DGG sing 121 n n C4 HC42 DGG sing 122 n n C3 C2 DGG sing 123 n n C3 HC31 DGG sing 124 n n C3 HC32 DGG sing 125 n n C2 C1 DGG sing 126 n n C2 HC21 DGG sing 127 n n C2 HC22 DGG sing 128 n n C1 O1 DGG doub 129 n n C1 O17 DGG sing 130 n n O17 C17 DGG sing 131 n n C17 C19 DGG sing 132 n n C17 H171 DGG sing 133 n n C17 H172 DGG sing 134 n n C19 O19 DGG sing 135 n n C19 C18 DGG sing 136 n n C19 H191 DGG sing 137 n n O19 C21 DGG sing 138 n n C21 O21 DGG doub 139 n n C21 C22 DGG sing 140 n n C22 C23 DGG sing 141 n n C22 H221 DGG sing 142 n n C22 H222 DGG sing 143 n n C23 C24 DGG sing 144 n n C23 H231 DGG sing 145 n n C23 H232 DGG sing 146 n n C24 C25 DGG sing 147 n n C24 H241 DGG sing 148 n n C24 H242 DGG sing 149 n n C25 C26 DGG sing 150 n n C25 H251 DGG sing 151 n n C25 H252 DGG sing 152 n n C26 C27 DGG sing 153 n n C26 H261 DGG sing 154 n n C26 H262 DGG sing 155 n n C27 C28 DGG sing 156 n n C27 H271 DGG sing 157 n n C27 H272 DGG sing 158 n n C28 C29 DGG sing 159 n n C28 H281 DGG sing 160 n n C28 H282 DGG sing 161 n n C29 C30 DGG sing 162 n n C29 C39 DGG sing 163 n n C29 H291 DGG sing 164 n n C30 C39 DGG sing 165 n n C30 C31 DGG sing 166 n n C30 H301 DGG sing 167 n n C39 H391 DGG sing 168 n n C39 H392 DGG sing 169 n n C31 C32 DGG sing 170 n n C31 H311 DGG sing 171 n n C31 H312 DGG sing 172 n n C32 C33 DGG sing 173 n n C32 H321 DGG sing 174 n n C32 H322 DGG sing 175 n n C33 C34 DGG sing 176 n n C33 H331 DGG sing 177 n n C33 H332 DGG sing 178 n n C34 C35 DGG sing 179 n n C34 H341 DGG sing 180 n n C34 H342 DGG sing 181 n n C35 C36 DGG sing 182 n n C35 H351 DGG sing 183 n n C35 H352 DGG sing 184 n n C36 H361 DGG sing 185 n n C36 H362 DGG sing 186 n n C36 H363 DGG sing 187 n n C18 OP2 DGG sing 188 n n C18 H181 DGG sing 189 n n C18 H182 DGG sing 190 n n P OP1 DGG sing 191 n n P OP2 DGG sing 192 n n P OP3 DGG doub 193 n n P OP4 DGG sing 194 n n OP1 HOP1 DGG sing 195 n n OP4 C40 DGG sing 196 n n C40 C41 DGG sing 197 n n C40 H401 DGG sing 198 n n C40 H402 DGG sing 199 n n C41 O42 DGG sing 200 n n C41 C43 DGG sing 201 n n C41 H411 DGG sing 202 n n O42 H421 DGG sing 203 n n C43 O44 DGG sing 204 n n C43 H431 DGG sing 205 n n C43 H432 DGG sing 206 n n O44 H441 DGG sing 207 n n # _atom_sites.entry_id 3OZV _atom_sites.fract_transf_matrix[1][1] 0.011465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM B 1 404 404 HEM HEM . D 3 FAD B 1 405 405 FAD FAD . E 4 DGG B 1 406 406 DGG DGG . F 5 ECN B 1 411 411 ECN ECN . G 2 HEM A 1 404 404 HEM HEM . H 3 FAD A 1 405 405 FAD FAD . I 4 DGG A 1 406 406 DGG DGG . J 6 PO4 A 1 407 407 PO4 PO4 . K 5 ECN A 1 411 411 ECN ECN . L 7 HOH B 1 407 407 HOH HOH . L 7 HOH B 2 408 408 HOH HOH . L 7 HOH B 3 409 409 HOH HOH . L 7 HOH B 4 410 410 HOH HOH . L 7 HOH B 5 412 412 HOH HOH . L 7 HOH B 6 413 413 HOH HOH . L 7 HOH B 7 414 414 HOH HOH . L 7 HOH B 8 415 415 HOH HOH . L 7 HOH B 9 416 416 HOH HOH . L 7 HOH B 10 417 417 HOH HOH . L 7 HOH B 11 418 418 HOH HOH . L 7 HOH B 12 419 419 HOH HOH . L 7 HOH B 13 420 420 HOH HOH . L 7 HOH B 14 421 421 HOH HOH . L 7 HOH B 15 422 422 HOH HOH . L 7 HOH B 16 423 423 HOH HOH . L 7 HOH B 17 424 424 HOH HOH . L 7 HOH B 18 425 425 HOH HOH . L 7 HOH B 19 426 426 HOH HOH . L 7 HOH B 20 427 427 HOH HOH . L 7 HOH B 21 428 428 HOH HOH . L 7 HOH B 22 429 429 HOH HOH . L 7 HOH B 23 430 430 HOH HOH . L 7 HOH B 24 431 431 HOH HOH . L 7 HOH B 25 432 432 HOH HOH . L 7 HOH B 26 433 433 HOH HOH . L 7 HOH B 27 434 434 HOH HOH . L 7 HOH B 28 435 435 HOH HOH . L 7 HOH B 29 436 436 HOH HOH . L 7 HOH B 30 437 437 HOH HOH . L 7 HOH B 31 438 438 HOH HOH . L 7 HOH B 32 439 439 HOH HOH . L 7 HOH B 33 440 440 HOH HOH . L 7 HOH B 34 441 441 HOH HOH . L 7 HOH B 35 442 442 HOH HOH . L 7 HOH B 36 443 443 HOH HOH . L 7 HOH B 37 444 444 HOH HOH . L 7 HOH B 38 445 445 HOH HOH . L 7 HOH B 39 446 446 HOH HOH . L 7 HOH B 40 447 447 HOH HOH . L 7 HOH B 41 448 448 HOH HOH . L 7 HOH B 42 449 449 HOH HOH . L 7 HOH B 43 450 450 HOH HOH . L 7 HOH B 44 451 451 HOH HOH . L 7 HOH B 45 452 452 HOH HOH . L 7 HOH B 46 453 453 HOH HOH . L 7 HOH B 47 454 454 HOH HOH . L 7 HOH B 48 455 455 HOH HOH . L 7 HOH B 49 456 456 HOH HOH . L 7 HOH B 50 457 457 HOH HOH . L 7 HOH B 51 458 458 HOH HOH . L 7 HOH B 52 459 459 HOH HOH . L 7 HOH B 53 460 460 HOH HOH . L 7 HOH B 54 461 461 HOH HOH . L 7 HOH B 55 462 462 HOH HOH . L 7 HOH B 56 463 463 HOH HOH . L 7 HOH B 57 464 464 HOH HOH . L 7 HOH B 58 465 411 HOH HOH . M 7 HOH A 1 408 408 HOH HOH . M 7 HOH A 2 409 409 HOH HOH . M 7 HOH A 3 410 410 HOH HOH . M 7 HOH A 4 412 412 HOH HOH . M 7 HOH A 5 413 413 HOH HOH . M 7 HOH A 6 414 414 HOH HOH . M 7 HOH A 7 415 415 HOH HOH . M 7 HOH A 8 416 416 HOH HOH . M 7 HOH A 9 417 417 HOH HOH . M 7 HOH A 10 418 418 HOH HOH . M 7 HOH A 11 419 419 HOH HOH . M 7 HOH A 12 420 420 HOH HOH . M 7 HOH A 13 421 421 HOH HOH . M 7 HOH A 14 422 422 HOH HOH . M 7 HOH A 15 423 423 HOH HOH . M 7 HOH A 16 424 424 HOH HOH . M 7 HOH A 17 425 425 HOH HOH . M 7 HOH A 18 426 426 HOH HOH . M 7 HOH A 19 427 427 HOH HOH . M 7 HOH A 20 428 428 HOH HOH . M 7 HOH A 21 429 429 HOH HOH . M 7 HOH A 22 430 430 HOH HOH . M 7 HOH A 23 431 431 HOH HOH . M 7 HOH A 24 432 432 HOH HOH . M 7 HOH A 25 433 433 HOH HOH . M 7 HOH A 26 434 434 HOH HOH . M 7 HOH A 27 435 435 HOH HOH . M 7 HOH A 28 436 436 HOH HOH . M 7 HOH A 29 437 437 HOH HOH . M 7 HOH A 30 438 438 HOH HOH . M 7 HOH A 31 439 439 HOH HOH . M 7 HOH A 32 440 440 HOH HOH . M 7 HOH A 33 441 441 HOH HOH . M 7 HOH A 34 442 442 HOH HOH . M 7 HOH A 35 443 443 HOH HOH . M 7 HOH A 36 444 444 HOH HOH . M 7 HOH A 37 445 445 HOH HOH . M 7 HOH A 38 446 446 HOH HOH . M 7 HOH A 39 447 447 HOH HOH . M 7 HOH A 40 448 448 HOH HOH . M 7 HOH A 41 449 449 HOH HOH . M 7 HOH A 42 450 450 HOH HOH . M 7 HOH A 43 451 451 HOH HOH . M 7 HOH A 44 452 452 HOH HOH . M 7 HOH A 45 453 453 HOH HOH . M 7 HOH A 46 454 454 HOH HOH . M 7 HOH A 47 455 455 HOH HOH . M 7 HOH A 48 456 456 HOH HOH . M 7 HOH A 49 457 457 HOH HOH . M 7 HOH A 50 458 458 HOH HOH . M 7 HOH A 51 459 459 HOH HOH . M 7 HOH A 52 460 460 HOH HOH . M 7 HOH A 53 461 461 HOH HOH . M 7 HOH A 54 462 462 HOH HOH . M 7 HOH A 55 463 463 HOH HOH . M 7 HOH A 56 464 464 HOH HOH . M 7 HOH A 57 465 465 HOH HOH . M 7 HOH A 58 466 466 HOH HOH . M 7 HOH A 59 467 467 HOH HOH . M 7 HOH A 60 468 468 HOH HOH . M 7 HOH A 61 469 469 HOH HOH . M 7 HOH A 62 470 470 HOH HOH . M 7 HOH A 63 471 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O19 DGG . . . E 4 5.868 19.497 -34.521 1 117.16 ? O19 DGG 406 B 1 HETATM 2 C C21 DGG . . . E 4 6.53 18.202 -34.476 1 126.88 ? C21 DGG 406 B 1 HETATM 3 O O21 DGG . . . E 4 7.083 17.801 -35.491 1 102.26 ? O21 DGG 406 B 1 HETATM 4 C C22 DGG . . . E 4 6.552 17.372 -33.204 1 146.52 ? C22 DGG 406 B 1 HETATM 5 C C23 DGG . . . E 4 5.204 17.323 -32.469 1 176.91 ? C23 DGG 406 B 1 HETATM 6 C C24 DGG . . . E 4 4.194 16.324 -33.051 1 193.13 ? C24 DGG 406 B 1 HETATM 7 C C25 DGG . . . E 4 3.396 15.494 -32.027 1 191.73 ? C25 DGG 406 B 1 HETATM 8 C C26 DGG . . . E 4 2.055 15.01 -32.609 1 168.99 ? C26 DGG 406 B 1 HETATM 9 C C27 DGG . . . E 4 1.331 13.929 -31.795 1 121.5 ? C27 DGG 406 B 1 HETATM 10 C C28 DGG . . . E 4 -0.198 14.029 -31.924 1 88.43 ? C28 DGG 406 B 1 HETATM 11 C C29 DGG . . . E 4 -0.845 12.652 -32.034 1 65.96 ? C29 DGG 406 B 1 HETATM 12 C C30 DGG . . . E 4 -2.281 12.386 -31.524 1 58.68 ? C30 DGG 406 B 1 HETATM 13 C C39 DGG . . . E 4 -1.084 12.146 -30.613 1 71.33 ? C39 DGG 406 B 1 HETATM 14 C C31 DGG . . . E 4 -3.118 13.419 -30.798 1 47.18 ? C31 DGG 406 B 1 HETATM 15 C C32 DGG . . . E 4 -4.517 13.439 -31.401 1 44.92 ? C32 DGG 406 B 1 HETATM 16 C C33 DGG . . . E 4 -5.658 13.414 -30.371 1 50.42 ? C33 DGG 406 B 1 HETATM 17 C C34 DGG . . . E 4 -6.362 12.047 -30.313 1 53.8 ? C34 DGG 406 B 1 HETATM 18 C C35 DGG . . . E 4 -7.783 12.062 -30.885 1 41.96 ? C35 DGG 406 B 1 HETATM 19 C C36 DGG . . . E 4 -7.744 11.812 -32.369 1 28.47 ? C36 DGG 406 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #