data_3P0J # _model_server_result.job_id gMJdjWlIuoj4E8J1P15ojA _model_server_result.datetime_utc '2024-11-29 02:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 3P0J # _exptl.entry_id 3P0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2S)-2-amino-3-hydroxypropyl]phenol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 74.47 _cell.angle_beta 80.83 _cell.angle_gamma 77.13 _cell.entry_id 3P0J _cell.length_a 57.519 _cell.length_b 111.934 _cell.length_c 141.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G 2 1 C,H,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 115 A MET 107 1_555 F NA NA . A NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A O VAL 118 A VAL 110 1_555 F NA NA . A NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc3 F NA NA . A NA 711 1_555 B O MET 115 B MET 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc4 F NA NA . A NA 711 1_555 B O VAL 118 B VAL 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc5 C O MET 115 C MET 107 1_555 I NA NA . C NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc6 C O VAL 118 C VAL 110 1_555 I NA NA . C NA 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc7 I NA NA . C NA 711 1_555 D O MET 115 D MET 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc8 I NA NA . C NA 711 1_555 D O VAL 118 D VAL 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? # _chem_comp.formula 'C9 H13 N O2' _chem_comp.formula_weight 167.205 _chem_comp.id TYE _chem_comp.mon_nstd_flag n _chem_comp.name 4-[(2S)-2-amino-3-hydroxypropyl]phenol _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'tyrosinol;bound form of TYROSINAL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C TYE sing 332 n n CA C TYE sing 333 n n C HC1 TYE sing 334 n n C HC2 TYE sing 335 n n N CA TYE sing 336 n n N H TYE sing 337 n n N H2 TYE sing 338 n n O HO TYE sing 339 n n CA CB TYE sing 340 n n CA HA TYE sing 341 n n CB CG TYE sing 342 n n CB HB TYE sing 343 n n CB HBA TYE sing 344 n n CD1 CG TYE doub 345 n y CG CD2 TYE sing 346 n y CZ OH TYE sing 347 n n OH HOH TYE sing 348 n n CE1 CZ TYE doub 349 n y CZ CE2 TYE sing 350 n y CD1 CE1 TYE sing 351 n y CD1 HD1 TYE sing 352 n n CD2 CE2 TYE doub 353 n y CD2 HD2 TYE sing 354 n n CE1 HE1 TYE sing 355 n n CE2 HE2 TYE sing 356 n n # _atom_sites.entry_id 3P0J _atom_sites.fract_transf_matrix[1][1] 0.017386 _atom_sites.fract_transf_matrix[1][2] -0.003972 _atom_sites.fract_transf_matrix[1][3] -0.001904 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009164 _atom_sites.fract_transf_matrix[2][3] -0.002279 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TYE A 1 701 701 TYE TYE . F 3 NA A 1 711 711 NA NA . G 2 TYE B 1 701 701 TYE TYE . H 2 TYE C 1 701 701 TYE TYE . I 3 NA C 1 711 711 NA NA . J 2 TYE D 1 701 701 TYE TYE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TYE . . . J 2 11.694 27.739 10.025 1 60 ? C TYE 701 D 1 HETATM 2 N N TYE . . . J 2 12.333 28.707 7.807 1 60 ? N TYE 701 D 1 HETATM 3 O O TYE . . . J 2 12.582 28.45 10.923 1 60 ? O TYE 701 D 1 HETATM 4 C CA TYE . . . J 2 12.325 27.477 8.615 1 60 ? CA TYE 701 D 1 HETATM 5 C CB TYE . . . J 2 13.755 26.939 8.754 1 60 ? CB TYE 701 D 1 HETATM 6 C CG TYE . . . J 2 14.151 26.033 7.591 1 60 ? CG TYE 701 D 1 HETATM 7 O OH TYE . . . J 2 15.306 23.594 4.443 1 60 ? OH TYE 701 D 1 HETATM 8 C CZ TYE . . . J 2 14.931 24.39 5.474 1 60 ? CZ TYE 701 D 1 HETATM 9 C CD1 TYE . . . J 2 15.456 26.092 7.106 1 60 ? CD1 TYE 701 D 1 HETATM 10 C CD2 TYE . . . J 2 13.234 25.15 7.018 1 60 ? CD2 TYE 701 D 1 HETATM 11 C CE1 TYE . . . J 2 15.847 25.273 6.043 1 60 ? CE1 TYE 701 D 1 HETATM 12 C CE2 TYE . . . J 2 13.628 24.332 5.961 1 60 ? CE2 TYE 701 D 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 12 #