data_3P0P
#
_model_server_result.job_id            VLmcvRpqC-r60zn5TofCkg 
_model_server_result.datetime_utc      '2024-11-26 14:06:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1163}' 
#
_entry.id    3P0P 
#
_exptl.entry_id    3P0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.32 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-(4-fluorophenyl)piperazin-1-yl]-6-methylpyrimidin-4(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P0P 
_cell.length_a            90.647 
_cell.length_b            97.892 
_cell.length_c            118.211 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 159 A CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A ND1 HIS 162 A HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 167 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 170 A CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc5 G ZN ZN . C ZN 1 1_555 B SG CYS 159 C CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 G ZN ZN . C ZN 1 1_555 B ND1 HIS 162 C HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc7 G ZN ZN . C ZN 1 1_555 B SG CYS 167 C CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc8 G ZN ZN . C ZN 1 1_555 B SG CYS 170 C CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'C15 H17 F N4 O' 
_chem_comp.formula_weight    288.32 
_chem_comp.id                NNF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-(4-fluorophenyl)piperazin-1-yl]-6-methylpyrimidin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAO NNF sing 237 n n 
OAB CAS NNF doub 238 n n 
FAC CAP NNF sing 239 n n 
CAD CAF NNF doub 240 n y 
CAD CAP NNF sing 241 n y 
CAE CAG NNF sing 242 n y 
CAE CAP NNF doub 243 n y 
CAF CAQ NNF sing 244 n y 
CAG CAQ NNF doub 245 n y 
CAH CAO NNF doub 246 n n 
CAH CAS NNF sing 247 n n 
CAI CAK NNF sing 248 n n 
CAI NAT NNF sing 249 n n 
CAJ CAL NNF sing 250 n n 
CAJ NAT NNF sing 251 n n 
CAK NAU NNF sing 252 n n 
CAL NAU NNF sing 253 n n 
NAM CAO NNF sing 254 n n 
NAM CAR NNF doub 255 n n 
NAN CAR NNF sing 256 n n 
NAN CAS NNF sing 257 n n 
CAQ NAT NNF sing 258 n n 
CAR NAU NNF sing 259 n n 
CAA HAA NNF sing 260 n n 
CAA HAAA NNF sing 261 n n 
CAA HAAB NNF sing 262 n n 
CAD HAD NNF sing 263 n n 
CAE HAE NNF sing 264 n n 
CAF HAF NNF sing 265 n n 
CAG HAG NNF sing 266 n n 
CAH HAH NNF sing 267 n n 
CAI HAI NNF sing 268 n n 
CAI HAIA NNF sing 269 n n 
CAJ HAJ NNF sing 270 n n 
CAJ HAJA NNF sing 271 n n 
CAK HAK NNF sing 272 n n 
CAK HAKA NNF sing 273 n n 
CAL HAL NNF sing 274 n n 
CAL HALA NNF sing 275 n n 
NAN HNAN NNF sing 276 n n 
#
_atom_sites.entry_id                     3P0P 
_atom_sites.fract_transf_matrix[1][1]    0.011032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1 1 ZN ZN . 
D 3 NNF A 1 1163 1 NNF DRG . 
E 4 SO4 A 1 2 2 SO4 SO4 . 
F 4 SO4 A 1 4 4 SO4 SO4 . 
G 2 ZN C 1 1 1 ZN ZN . 
H 3 NNF C 1 2 2 NNF DRG . 
I 4 SO4 C 1 1163 1 SO4 SO4 . 
J 4 SO4 C 1 3 3 SO4 SO4 . 
K 5 HOH A 1 6 6 HOH HOH . 
K 5 HOH A 2 7 7 HOH HOH . 
K 5 HOH A 3 10 10 HOH HOH . 
K 5 HOH A 4 13 13 HOH HOH . 
K 5 HOH A 5 15 15 HOH HOH . 
K 5 HOH A 6 17 17 HOH HOH . 
K 5 HOH A 7 18 18 HOH HOH . 
K 5 HOH A 8 19 19 HOH HOH . 
K 5 HOH A 9 20 20 HOH HOH . 
K 5 HOH A 10 21 21 HOH HOH . 
K 5 HOH A 11 24 24 HOH HOH . 
K 5 HOH A 12 25 25 HOH HOH . 
K 5 HOH A 13 27 27 HOH HOH . 
K 5 HOH A 14 28 28 HOH HOH . 
K 5 HOH A 15 30 30 HOH HOH . 
K 5 HOH A 16 32 32 HOH HOH . 
K 5 HOH A 17 33 33 HOH HOH . 
K 5 HOH A 18 35 35 HOH HOH . 
K 5 HOH A 19 37 37 HOH HOH . 
K 5 HOH A 20 38 38 HOH HOH . 
K 5 HOH A 21 40 40 HOH HOH . 
K 5 HOH A 22 41 41 HOH HOH . 
K 5 HOH A 23 44 44 HOH HOH . 
K 5 HOH A 24 45 45 HOH HOH . 
K 5 HOH A 25 47 47 HOH HOH . 
K 5 HOH A 26 48 48 HOH HOH . 
K 5 HOH A 27 49 49 HOH HOH . 
K 5 HOH A 28 50 50 HOH HOH . 
K 5 HOH A 29 52 52 HOH HOH . 
K 5 HOH A 30 53 53 HOH HOH . 
K 5 HOH A 31 55 55 HOH HOH . 
K 5 HOH A 32 56 56 HOH HOH . 
K 5 HOH A 33 57 57 HOH HOH . 
K 5 HOH A 34 58 58 HOH HOH . 
K 5 HOH A 35 60 60 HOH HOH . 
K 5 HOH A 36 64 64 HOH HOH . 
K 5 HOH A 37 67 67 HOH HOH . 
K 5 HOH A 38 68 68 HOH HOH . 
K 5 HOH A 39 70 70 HOH HOH . 
K 5 HOH A 40 73 73 HOH HOH . 
K 5 HOH A 41 74 74 HOH HOH . 
K 5 HOH A 42 79 79 HOH HOH . 
K 5 HOH A 43 80 80 HOH HOH . 
K 5 HOH A 44 82 82 HOH HOH . 
K 5 HOH A 45 85 85 HOH HOH . 
K 5 HOH A 46 86 86 HOH HOH . 
K 5 HOH A 47 88 88 HOH HOH . 
K 5 HOH A 48 89 89 HOH HOH . 
K 5 HOH A 49 91 91 HOH HOH . 
K 5 HOH A 50 94 94 HOH HOH . 
K 5 HOH A 51 95 95 HOH HOH . 
K 5 HOH A 52 96 96 HOH HOH . 
K 5 HOH A 53 99 99 HOH HOH . 
K 5 HOH A 54 102 102 HOH HOH . 
K 5 HOH A 55 105 105 HOH HOH . 
K 5 HOH A 56 106 106 HOH HOH . 
K 5 HOH A 57 107 107 HOH HOH . 
K 5 HOH A 58 108 108 HOH HOH . 
K 5 HOH A 59 110 110 HOH HOH . 
K 5 HOH A 60 111 111 HOH HOH . 
K 5 HOH A 61 112 112 HOH HOH . 
K 5 HOH A 62 113 113 HOH HOH . 
K 5 HOH A 63 115 115 HOH HOH . 
K 5 HOH A 64 1164 1 HOH HOH . 
K 5 HOH A 65 1165 2 HOH HOH . 
L 5 HOH C 1 4 4 HOH HOH . 
L 5 HOH C 2 5 5 HOH HOH . 
L 5 HOH C 3 8 8 HOH HOH . 
L 5 HOH C 4 9 9 HOH HOH . 
L 5 HOH C 5 11 11 HOH HOH . 
L 5 HOH C 6 12 12 HOH HOH . 
L 5 HOH C 7 14 14 HOH HOH . 
L 5 HOH C 8 16 16 HOH HOH . 
L 5 HOH C 9 22 22 HOH HOH . 
L 5 HOH C 10 23 23 HOH HOH . 
L 5 HOH C 11 26 26 HOH HOH . 
L 5 HOH C 12 29 29 HOH HOH . 
L 5 HOH C 13 31 31 HOH HOH . 
L 5 HOH C 14 34 34 HOH HOH . 
L 5 HOH C 15 36 36 HOH HOH . 
L 5 HOH C 16 39 39 HOH HOH . 
L 5 HOH C 17 42 42 HOH HOH . 
L 5 HOH C 18 43 43 HOH HOH . 
L 5 HOH C 19 46 46 HOH HOH . 
L 5 HOH C 20 51 51 HOH HOH . 
L 5 HOH C 21 54 54 HOH HOH . 
L 5 HOH C 22 59 59 HOH HOH . 
L 5 HOH C 23 61 61 HOH HOH . 
L 5 HOH C 24 62 62 HOH HOH . 
L 5 HOH C 25 63 63 HOH HOH . 
L 5 HOH C 26 65 65 HOH HOH . 
L 5 HOH C 27 66 66 HOH HOH . 
L 5 HOH C 28 69 69 HOH HOH . 
L 5 HOH C 29 71 71 HOH HOH . 
L 5 HOH C 30 72 72 HOH HOH . 
L 5 HOH C 31 75 75 HOH HOH . 
L 5 HOH C 32 76 76 HOH HOH . 
L 5 HOH C 33 77 77 HOH HOH . 
L 5 HOH C 34 78 78 HOH HOH . 
L 5 HOH C 35 81 81 HOH HOH . 
L 5 HOH C 36 83 83 HOH HOH . 
L 5 HOH C 37 84 84 HOH HOH . 
L 5 HOH C 38 87 87 HOH HOH . 
L 5 HOH C 39 90 90 HOH HOH . 
L 5 HOH C 40 92 92 HOH HOH . 
L 5 HOH C 41 93 93 HOH HOH . 
L 5 HOH C 42 97 97 HOH HOH . 
L 5 HOH C 43 98 98 HOH HOH . 
L 5 HOH C 44 100 100 HOH HOH . 
L 5 HOH C 45 101 101 HOH HOH . 
L 5 HOH C 46 103 103 HOH HOH . 
L 5 HOH C 47 104 104 HOH HOH . 
L 5 HOH C 48 109 109 HOH HOH . 
L 5 HOH C 49 114 114 HOH HOH . 
L 5 HOH C 50 1164 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA NNF . . . D 3 -5.3 -14.314 -14.939 1 9.45 ? CAA NNF 1163 A 1 
HETATM 2 O OAB NNF . . . D 3 -8.386 -10.662 -15.27 1 15.16 ? OAB NNF 1163 A 1 
HETATM 3 F FAC NNF . . . D 3 -5.032 -9.802 -3.607 1 30.68 ? FAC NNF 1163 A 1 
HETATM 4 C CAD NNF . . . D 3 -5.635 -11.306 -5.285 1 27.29 ? CAD NNF 1163 A 1 
HETATM 5 C CAE NNF . . . D 3 -5.123 -9.069 -5.858 1 27.75 ? CAE NNF 1163 A 1 
HETATM 6 C CAF NNF . . . D 3 -5.907 -11.568 -6.602 1 24.98 ? CAF NNF 1163 A 1 
HETATM 7 C CAG NNF . . . D 3 -5.388 -9.35 -7.183 1 25.26 ? CAG NNF 1163 A 1 
HETATM 8 C CAH NNF . . . D 3 -6.939 -12.409 -15.33 1 13.38 ? CAH NNF 1163 A 1 
HETATM 9 C CAI NNF . . . D 3 -5.696 -12.237 -9.288 1 14.77 ? CAI NNF 1163 A 1 
HETATM 10 C CAJ NNF . . . D 3 -6.963 -10.054 -9.579 1 15.45 ? CAJ NNF 1163 A 1 
HETATM 11 C CAK NNF . . . D 3 -5.462 -12.225 -10.727 1 15.38 ? CAK NNF 1163 A 1 
HETATM 12 C CAL NNF . . . D 3 -7.406 -10.591 -10.86 1 14.28 ? CAL NNF 1163 A 1 
HETATM 13 N NAM NNF . . . D 3 -6 -12.824 -13.265 1 15.11 ? NAM NNF 1163 A 1 
HETATM 14 N NAN NNF . . . D 3 -7.432 -11.165 -13.462 1 14.1 ? NAN NNF 1163 A 1 
HETATM 15 C CAO NNF . . . D 3 -6.108 -13.144 -14.51 1 12.44 ? CAO NNF 1163 A 1 
HETATM 16 C CAP NNF . . . D 3 -5.257 -10.048 -4.896 1 29.5 ? CAP NNF 1163 A 1 
HETATM 17 C CAQ NNF . . . D 3 -5.772 -10.607 -7.558 1 22.31 ? CAQ NNF 1163 A 1 
HETATM 18 C CAR NNF . . . D 3 -6.614 -11.837 -12.737 1 14.89 ? CAR NNF 1163 A 1 
HETATM 19 C CAS NNF . . . D 3 -7.624 -11.401 -14.73 1 14.34 ? CAS NNF 1163 A 1 
HETATM 20 N NAT NNF . . . D 3 -6.076 -10.939 -8.842 1 17.32 ? NAT NNF 1163 A 1 
HETATM 21 N NAU NNF . . . D 3 -6.485 -11.541 -11.448 1 15.33 ? NAU NNF 1163 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           21 
#