data_3P0P
#
_model_server_result.job_id            gHG6ZAADdMNjevUIu9hS0Q 
_model_server_result.datetime_utc      '2024-10-19 08:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2}' 
#
_entry.id    3P0P 
#
_exptl.entry_id    3P0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.32 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-(4-fluorophenyl)piperazin-1-yl]-6-methylpyrimidin-4(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P0P 
_cell.length_a            90.647 
_cell.length_b            97.892 
_cell.length_c            118.211 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 159 A CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A ND1 HIS 162 A HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 167 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 170 A CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc5 G ZN ZN . C ZN 1 1_555 B SG CYS 159 C CYS 1081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 G ZN ZN . C ZN 1 1_555 B ND1 HIS 162 C HIS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc7 G ZN ZN . C ZN 1 1_555 B SG CYS 167 C CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc8 G ZN ZN . C ZN 1 1_555 B SG CYS 170 C CYS 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'C15 H17 F N4 O' 
_chem_comp.formula_weight    288.32 
_chem_comp.id                NNF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-(4-fluorophenyl)piperazin-1-yl]-6-methylpyrimidin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAO NNF sing 237 n n 
OAB CAS NNF doub 238 n n 
FAC CAP NNF sing 239 n n 
CAD CAF NNF doub 240 n y 
CAD CAP NNF sing 241 n y 
CAE CAG NNF sing 242 n y 
CAE CAP NNF doub 243 n y 
CAF CAQ NNF sing 244 n y 
CAG CAQ NNF doub 245 n y 
CAH CAO NNF doub 246 n n 
CAH CAS NNF sing 247 n n 
CAI CAK NNF sing 248 n n 
CAI NAT NNF sing 249 n n 
CAJ CAL NNF sing 250 n n 
CAJ NAT NNF sing 251 n n 
CAK NAU NNF sing 252 n n 
CAL NAU NNF sing 253 n n 
NAM CAO NNF sing 254 n n 
NAM CAR NNF doub 255 n n 
NAN CAR NNF sing 256 n n 
NAN CAS NNF sing 257 n n 
CAQ NAT NNF sing 258 n n 
CAR NAU NNF sing 259 n n 
CAA HAA NNF sing 260 n n 
CAA HAAA NNF sing 261 n n 
CAA HAAB NNF sing 262 n n 
CAD HAD NNF sing 263 n n 
CAE HAE NNF sing 264 n n 
CAF HAF NNF sing 265 n n 
CAG HAG NNF sing 266 n n 
CAH HAH NNF sing 267 n n 
CAI HAI NNF sing 268 n n 
CAI HAIA NNF sing 269 n n 
CAJ HAJ NNF sing 270 n n 
CAJ HAJA NNF sing 271 n n 
CAK HAK NNF sing 272 n n 
CAK HAKA NNF sing 273 n n 
CAL HAL NNF sing 274 n n 
CAL HALA NNF sing 275 n n 
NAN HNAN NNF sing 276 n n 
#
_atom_sites.entry_id                     3P0P 
_atom_sites.fract_transf_matrix[1][1]    0.011032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1 1 ZN ZN . 
D 3 NNF A 1 1163 1 NNF DRG . 
E 4 SO4 A 1 2 2 SO4 SO4 . 
F 4 SO4 A 1 4 4 SO4 SO4 . 
G 2 ZN C 1 1 1 ZN ZN . 
H 3 NNF C 1 2 2 NNF DRG . 
I 4 SO4 C 1 1163 1 SO4 SO4 . 
J 4 SO4 C 1 3 3 SO4 SO4 . 
K 5 HOH A 1 6 6 HOH HOH . 
K 5 HOH A 2 7 7 HOH HOH . 
K 5 HOH A 3 10 10 HOH HOH . 
K 5 HOH A 4 13 13 HOH HOH . 
K 5 HOH A 5 15 15 HOH HOH . 
K 5 HOH A 6 17 17 HOH HOH . 
K 5 HOH A 7 18 18 HOH HOH . 
K 5 HOH A 8 19 19 HOH HOH . 
K 5 HOH A 9 20 20 HOH HOH . 
K 5 HOH A 10 21 21 HOH HOH . 
K 5 HOH A 11 24 24 HOH HOH . 
K 5 HOH A 12 25 25 HOH HOH . 
K 5 HOH A 13 27 27 HOH HOH . 
K 5 HOH A 14 28 28 HOH HOH . 
K 5 HOH A 15 30 30 HOH HOH . 
K 5 HOH A 16 32 32 HOH HOH . 
K 5 HOH A 17 33 33 HOH HOH . 
K 5 HOH A 18 35 35 HOH HOH . 
K 5 HOH A 19 37 37 HOH HOH . 
K 5 HOH A 20 38 38 HOH HOH . 
K 5 HOH A 21 40 40 HOH HOH . 
K 5 HOH A 22 41 41 HOH HOH . 
K 5 HOH A 23 44 44 HOH HOH . 
K 5 HOH A 24 45 45 HOH HOH . 
K 5 HOH A 25 47 47 HOH HOH . 
K 5 HOH A 26 48 48 HOH HOH . 
K 5 HOH A 27 49 49 HOH HOH . 
K 5 HOH A 28 50 50 HOH HOH . 
K 5 HOH A 29 52 52 HOH HOH . 
K 5 HOH A 30 53 53 HOH HOH . 
K 5 HOH A 31 55 55 HOH HOH . 
K 5 HOH A 32 56 56 HOH HOH . 
K 5 HOH A 33 57 57 HOH HOH . 
K 5 HOH A 34 58 58 HOH HOH . 
K 5 HOH A 35 60 60 HOH HOH . 
K 5 HOH A 36 64 64 HOH HOH . 
K 5 HOH A 37 67 67 HOH HOH . 
K 5 HOH A 38 68 68 HOH HOH . 
K 5 HOH A 39 70 70 HOH HOH . 
K 5 HOH A 40 73 73 HOH HOH . 
K 5 HOH A 41 74 74 HOH HOH . 
K 5 HOH A 42 79 79 HOH HOH . 
K 5 HOH A 43 80 80 HOH HOH . 
K 5 HOH A 44 82 82 HOH HOH . 
K 5 HOH A 45 85 85 HOH HOH . 
K 5 HOH A 46 86 86 HOH HOH . 
K 5 HOH A 47 88 88 HOH HOH . 
K 5 HOH A 48 89 89 HOH HOH . 
K 5 HOH A 49 91 91 HOH HOH . 
K 5 HOH A 50 94 94 HOH HOH . 
K 5 HOH A 51 95 95 HOH HOH . 
K 5 HOH A 52 96 96 HOH HOH . 
K 5 HOH A 53 99 99 HOH HOH . 
K 5 HOH A 54 102 102 HOH HOH . 
K 5 HOH A 55 105 105 HOH HOH . 
K 5 HOH A 56 106 106 HOH HOH . 
K 5 HOH A 57 107 107 HOH HOH . 
K 5 HOH A 58 108 108 HOH HOH . 
K 5 HOH A 59 110 110 HOH HOH . 
K 5 HOH A 60 111 111 HOH HOH . 
K 5 HOH A 61 112 112 HOH HOH . 
K 5 HOH A 62 113 113 HOH HOH . 
K 5 HOH A 63 115 115 HOH HOH . 
K 5 HOH A 64 1164 1 HOH HOH . 
K 5 HOH A 65 1165 2 HOH HOH . 
L 5 HOH C 1 4 4 HOH HOH . 
L 5 HOH C 2 5 5 HOH HOH . 
L 5 HOH C 3 8 8 HOH HOH . 
L 5 HOH C 4 9 9 HOH HOH . 
L 5 HOH C 5 11 11 HOH HOH . 
L 5 HOH C 6 12 12 HOH HOH . 
L 5 HOH C 7 14 14 HOH HOH . 
L 5 HOH C 8 16 16 HOH HOH . 
L 5 HOH C 9 22 22 HOH HOH . 
L 5 HOH C 10 23 23 HOH HOH . 
L 5 HOH C 11 26 26 HOH HOH . 
L 5 HOH C 12 29 29 HOH HOH . 
L 5 HOH C 13 31 31 HOH HOH . 
L 5 HOH C 14 34 34 HOH HOH . 
L 5 HOH C 15 36 36 HOH HOH . 
L 5 HOH C 16 39 39 HOH HOH . 
L 5 HOH C 17 42 42 HOH HOH . 
L 5 HOH C 18 43 43 HOH HOH . 
L 5 HOH C 19 46 46 HOH HOH . 
L 5 HOH C 20 51 51 HOH HOH . 
L 5 HOH C 21 54 54 HOH HOH . 
L 5 HOH C 22 59 59 HOH HOH . 
L 5 HOH C 23 61 61 HOH HOH . 
L 5 HOH C 24 62 62 HOH HOH . 
L 5 HOH C 25 63 63 HOH HOH . 
L 5 HOH C 26 65 65 HOH HOH . 
L 5 HOH C 27 66 66 HOH HOH . 
L 5 HOH C 28 69 69 HOH HOH . 
L 5 HOH C 29 71 71 HOH HOH . 
L 5 HOH C 30 72 72 HOH HOH . 
L 5 HOH C 31 75 75 HOH HOH . 
L 5 HOH C 32 76 76 HOH HOH . 
L 5 HOH C 33 77 77 HOH HOH . 
L 5 HOH C 34 78 78 HOH HOH . 
L 5 HOH C 35 81 81 HOH HOH . 
L 5 HOH C 36 83 83 HOH HOH . 
L 5 HOH C 37 84 84 HOH HOH . 
L 5 HOH C 38 87 87 HOH HOH . 
L 5 HOH C 39 90 90 HOH HOH . 
L 5 HOH C 40 92 92 HOH HOH . 
L 5 HOH C 41 93 93 HOH HOH . 
L 5 HOH C 42 97 97 HOH HOH . 
L 5 HOH C 43 98 98 HOH HOH . 
L 5 HOH C 44 100 100 HOH HOH . 
L 5 HOH C 45 101 101 HOH HOH . 
L 5 HOH C 46 103 103 HOH HOH . 
L 5 HOH C 47 104 104 HOH HOH . 
L 5 HOH C 48 109 109 HOH HOH . 
L 5 HOH C 49 114 114 HOH HOH . 
L 5 HOH C 50 1164 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA NNF . . . H 3 11.217 -44.201 -14.396 1 15.74 ? CAA NNF 2 C 1 
HETATM 2 O OAB NNF . . . H 3 7.96 -40.774 -13.78 1 6.88 ? OAB NNF 2 C 1 
HETATM 3 F FAC NNF . . . H 3 7.048 -44.252 -25.563 1 44.55 ? FAC NNF 2 C 1 
HETATM 4 C CAD NNF . . . H 3 8.525 -43.303 -24.087 1 36.16 ? CAD NNF 2 C 1 
HETATM 5 C CAE NNF . . . H 3 6.569 -44.448 -23.339 1 38.27 ? CAE NNF 2 C 1 
HETATM 6 C CAF NNF . . . H 3 8.832 -43.059 -22.767 1 35.01 ? CAF NNF 2 C 1 
HETATM 7 C CAG NNF . . . H 3 6.891 -44.201 -22.021 1 35.71 ? CAG NNF 2 C 1 
HETATM 8 C CAH NNF . . . H 3 9.509 -42.381 -13.958 1 14.03 ? CAH NNF 2 C 1 
HETATM 9 C CAI NNF . . . H 3 9.12 -44.119 -19.683 1 21.48 ? CAI NNF 2 C 1 
HETATM 10 C CAJ NNF . . . H 3 7.817 -42.01 -19.905 1 22.37 ? CAJ NNF 2 C 1 
HETATM 11 C CAK NNF . . . H 3 9.723 -43.379 -18.557 1 20.2 ? CAK NNF 2 C 1 
HETATM 12 C CAL NNF . . . H 3 7.481 -42.256 -18.498 1 21.97 ? CAL NNF 2 C 1 
HETATM 13 N NAM NNF . . . H 3 9.793 -43.303 -16.061 1 16.93 ? NAM NNF 2 C 1 
HETATM 14 N NAN NNF . . . H 3 8.224 -41.633 -15.76 1 14.6 ? NAN NNF 2 C 1 
HETATM 15 C CAO NNF . . . H 3 10.143 -43.262 -14.811 1 15.52 ? CAO NNF 2 C 1 
HETATM 16 C CAP NNF . . . H 3 7.39 -44.011 -24.338 1 39.64 ? CAP NNF 2 C 1 
HETATM 17 C CAQ NNF . . . H 3 8.027 -43.512 -21.735 1 32.27 ? CAQ NNF 2 C 1 
HETATM 18 C CAR NNF . . . H 3 8.881 -42.531 -16.528 1 17.76 ? CAR NNF 2 C 1 
HETATM 19 C CAS NNF . . . H 3 8.526 -41.569 -14.455 1 11.67 ? CAS NNF 2 C 1 
HETATM 20 N NAT NNF . . . H 3 8.321 -43.234 -20.454 1 24.71 ? NAT NNF 2 C 1 
HETATM 21 N NAU NNF . . . H 3 8.687 -42.706 -17.826 1 21.26 ? NAU NNF 2 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#