data_3P0T # _model_server_result.job_id uBLYpSLm1j8CCiEu8UGsWA _model_server_result.datetime_utc '2024-11-05 05:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":200}' # _entry.id 3P0T # _exptl.entry_id 3P0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P0T _cell.length_a 55.61 _cell.length_b 55.61 _cell.length_c 205.28 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3P0T _atom_sites.fract_transf_matrix[1][1] 0.017982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 150 150 SO4 SO4 . D 2 SO4 A 1 151 151 SO4 SO4 . E 2 SO4 A 1 152 152 SO4 SO4 . F 3 EDO A 1 200 200 EDO EDO . G 3 EDO A 1 201 201 EDO EDO . H 3 EDO A 1 204 204 EDO EDO . I 2 SO4 B 1 150 150 SO4 SO4 . J 3 EDO B 1 200 200 EDO EDO . K 3 EDO B 1 201 201 EDO EDO . L 3 EDO B 1 202 202 EDO EDO . M 3 EDO B 1 203 203 EDO EDO . N 3 EDO B 1 204 204 EDO EDO . O 4 HOH A 1 135 135 HOH HOH . O 4 HOH A 2 136 2 HOH HOH . O 4 HOH A 3 137 137 HOH HOH . O 4 HOH A 4 138 3 HOH HOH . O 4 HOH A 5 139 5 HOH HOH . O 4 HOH A 6 140 7 HOH HOH . O 4 HOH A 7 141 9 HOH HOH . O 4 HOH A 8 142 142 HOH HOH . O 4 HOH A 9 143 13 HOH HOH . O 4 HOH A 10 144 14 HOH HOH . O 4 HOH A 11 145 17 HOH HOH . O 4 HOH A 12 146 18 HOH HOH . O 4 HOH A 13 147 19 HOH HOH . O 4 HOH A 14 148 148 HOH HOH . O 4 HOH A 15 149 21 HOH HOH . O 4 HOH A 16 153 22 HOH HOH . O 4 HOH A 17 154 23 HOH HOH . O 4 HOH A 18 155 155 HOH HOH . O 4 HOH A 19 156 156 HOH HOH . O 4 HOH A 20 157 157 HOH HOH . O 4 HOH A 21 158 24 HOH HOH . O 4 HOH A 22 159 29 HOH HOH . O 4 HOH A 23 160 31 HOH HOH . O 4 HOH A 24 161 161 HOH HOH . O 4 HOH A 25 162 32 HOH HOH . O 4 HOH A 26 163 34 HOH HOH . O 4 HOH A 27 164 37 HOH HOH . O 4 HOH A 28 165 165 HOH HOH . O 4 HOH A 29 166 166 HOH HOH . O 4 HOH A 30 167 167 HOH HOH . O 4 HOH A 31 168 38 HOH HOH . O 4 HOH A 32 169 169 HOH HOH . O 4 HOH A 33 170 170 HOH HOH . O 4 HOH A 34 171 42 HOH HOH . O 4 HOH A 35 172 172 HOH HOH . O 4 HOH A 36 173 173 HOH HOH . O 4 HOH A 37 174 174 HOH HOH . O 4 HOH A 38 175 175 HOH HOH . O 4 HOH A 39 176 176 HOH HOH . O 4 HOH A 40 177 45 HOH HOH . O 4 HOH A 41 178 178 HOH HOH . O 4 HOH A 42 179 179 HOH HOH . O 4 HOH A 43 180 180 HOH HOH . O 4 HOH A 44 181 47 HOH HOH . O 4 HOH A 45 182 182 HOH HOH . O 4 HOH A 46 183 183 HOH HOH . O 4 HOH A 47 184 50 HOH HOH . O 4 HOH A 48 185 185 HOH HOH . O 4 HOH A 49 186 55 HOH HOH . O 4 HOH A 50 187 187 HOH HOH . O 4 HOH A 51 188 188 HOH HOH . O 4 HOH A 52 189 57 HOH HOH . O 4 HOH A 53 190 190 HOH HOH . O 4 HOH A 54 191 62 HOH HOH . O 4 HOH A 55 192 192 HOH HOH . O 4 HOH A 56 193 66 HOH HOH . O 4 HOH A 57 194 68 HOH HOH . O 4 HOH A 58 195 69 HOH HOH . O 4 HOH A 59 196 70 HOH HOH . O 4 HOH A 60 197 71 HOH HOH . O 4 HOH A 61 198 198 HOH HOH . O 4 HOH A 62 199 199 HOH HOH . O 4 HOH A 63 202 202 HOH HOH . O 4 HOH A 64 203 203 HOH HOH . O 4 HOH A 65 205 205 HOH HOH . O 4 HOH A 66 206 206 HOH HOH . O 4 HOH A 67 207 207 HOH HOH . O 4 HOH A 68 208 208 HOH HOH . O 4 HOH A 69 209 209 HOH HOH . O 4 HOH A 70 210 210 HOH HOH . O 4 HOH A 71 211 211 HOH HOH . O 4 HOH A 72 212 212 HOH HOH . O 4 HOH A 73 213 74 HOH HOH . O 4 HOH A 74 214 77 HOH HOH . O 4 HOH A 75 215 78 HOH HOH . O 4 HOH A 76 216 81 HOH HOH . O 4 HOH A 77 217 82 HOH HOH . O 4 HOH A 78 218 84 HOH HOH . O 4 HOH A 79 219 87 HOH HOH . O 4 HOH A 80 220 88 HOH HOH . O 4 HOH A 81 221 89 HOH HOH . O 4 HOH A 82 222 93 HOH HOH . O 4 HOH A 83 223 94 HOH HOH . O 4 HOH A 84 224 96 HOH HOH . O 4 HOH A 85 225 97 HOH HOH . O 4 HOH A 86 226 103 HOH HOH . O 4 HOH A 87 227 227 HOH HOH . O 4 HOH A 88 228 228 HOH HOH . O 4 HOH A 89 229 229 HOH HOH . O 4 HOH A 90 230 230 HOH HOH . O 4 HOH A 91 231 231 HOH HOH . O 4 HOH A 92 232 232 HOH HOH . O 4 HOH A 93 233 105 HOH HOH . O 4 HOH A 94 234 234 HOH HOH . O 4 HOH A 95 235 235 HOH HOH . O 4 HOH A 96 236 106 HOH HOH . O 4 HOH A 97 237 237 HOH HOH . O 4 HOH A 98 238 107 HOH HOH . O 4 HOH A 99 239 108 HOH HOH . O 4 HOH A 100 240 110 HOH HOH . O 4 HOH A 101 241 113 HOH HOH . O 4 HOH A 102 242 116 HOH HOH . O 4 HOH A 103 243 117 HOH HOH . O 4 HOH A 104 244 118 HOH HOH . O 4 HOH A 105 245 123 HOH HOH . O 4 HOH A 106 246 246 HOH HOH . O 4 HOH A 107 247 124 HOH HOH . O 4 HOH A 108 248 125 HOH HOH . O 4 HOH A 109 249 126 HOH HOH . O 4 HOH A 110 250 128 HOH HOH . O 4 HOH A 111 251 129 HOH HOH . O 4 HOH A 112 252 252 HOH HOH . O 4 HOH A 113 253 253 HOH HOH . O 4 HOH A 114 254 254 HOH HOH . O 4 HOH A 115 255 131 HOH HOH . O 4 HOH A 116 256 256 HOH HOH . O 4 HOH A 117 257 257 HOH HOH . O 4 HOH A 118 258 258 HOH HOH . O 4 HOH A 119 259 259 HOH HOH . O 4 HOH A 120 260 260 HOH HOH . O 4 HOH A 121 261 261 HOH HOH . O 4 HOH A 122 262 262 HOH HOH . O 4 HOH A 123 263 263 HOH HOH . O 4 HOH A 124 264 264 HOH HOH . O 4 HOH A 125 265 132 HOH HOH . O 4 HOH A 126 266 134 HOH HOH . O 4 HOH A 127 267 152 HOH HOH . O 4 HOH A 128 268 200 HOH HOH . O 4 HOH A 129 276 276 HOH HOH . O 4 HOH A 130 279 279 HOH HOH . O 4 HOH A 131 280 280 HOH HOH . O 4 HOH A 132 281 281 HOH HOH . O 4 HOH A 133 282 282 HOH HOH . O 4 HOH A 134 283 283 HOH HOH . O 4 HOH A 135 284 284 HOH HOH . O 4 HOH A 136 285 285 HOH HOH . O 4 HOH A 137 286 286 HOH HOH . O 4 HOH A 138 292 292 HOH HOH . O 4 HOH A 139 293 293 HOH HOH . O 4 HOH A 140 295 295 HOH HOH . O 4 HOH A 141 296 296 HOH HOH . O 4 HOH A 142 297 297 HOH HOH . P 4 HOH B 1 135 1 HOH HOH . P 4 HOH B 2 136 136 HOH HOH . P 4 HOH B 3 137 4 HOH HOH . P 4 HOH B 4 138 138 HOH HOH . P 4 HOH B 5 139 139 HOH HOH . P 4 HOH B 6 140 140 HOH HOH . P 4 HOH B 7 141 141 HOH HOH . P 4 HOH B 8 142 6 HOH HOH . P 4 HOH B 9 143 143 HOH HOH . P 4 HOH B 10 144 144 HOH HOH . P 4 HOH B 11 145 145 HOH HOH . P 4 HOH B 12 146 146 HOH HOH . P 4 HOH B 13 147 147 HOH HOH . P 4 HOH B 14 148 8 HOH HOH . P 4 HOH B 15 149 149 HOH HOH . P 4 HOH B 16 151 151 HOH HOH . P 4 HOH B 17 152 10 HOH HOH . P 4 HOH B 18 153 153 HOH HOH . P 4 HOH B 19 154 154 HOH HOH . P 4 HOH B 20 155 11 HOH HOH . P 4 HOH B 21 156 12 HOH HOH . P 4 HOH B 22 157 15 HOH HOH . P 4 HOH B 23 158 158 HOH HOH . P 4 HOH B 24 159 159 HOH HOH . P 4 HOH B 25 160 160 HOH HOH . P 4 HOH B 26 161 16 HOH HOH . P 4 HOH B 27 162 162 HOH HOH . P 4 HOH B 28 163 163 HOH HOH . P 4 HOH B 29 164 164 HOH HOH . P 4 HOH B 30 165 20 HOH HOH . P 4 HOH B 31 166 25 HOH HOH . P 4 HOH B 32 167 26 HOH HOH . P 4 HOH B 33 168 168 HOH HOH . P 4 HOH B 34 169 27 HOH HOH . P 4 HOH B 35 170 28 HOH HOH . P 4 HOH B 36 171 171 HOH HOH . P 4 HOH B 37 172 30 HOH HOH . P 4 HOH B 38 173 33 HOH HOH . P 4 HOH B 39 174 35 HOH HOH . P 4 HOH B 40 175 36 HOH HOH . P 4 HOH B 41 176 39 HOH HOH . P 4 HOH B 42 177 177 HOH HOH . P 4 HOH B 43 178 40 HOH HOH . P 4 HOH B 44 179 41 HOH HOH . P 4 HOH B 45 180 43 HOH HOH . P 4 HOH B 46 181 181 HOH HOH . P 4 HOH B 47 182 44 HOH HOH . P 4 HOH B 48 183 46 HOH HOH . P 4 HOH B 49 184 184 HOH HOH . P 4 HOH B 50 185 48 HOH HOH . P 4 HOH B 51 186 186 HOH HOH . P 4 HOH B 52 187 49 HOH HOH . P 4 HOH B 53 188 51 HOH HOH . P 4 HOH B 54 189 189 HOH HOH . P 4 HOH B 55 190 52 HOH HOH . P 4 HOH B 56 191 191 HOH HOH . P 4 HOH B 57 192 53 HOH HOH . P 4 HOH B 58 193 193 HOH HOH . P 4 HOH B 59 194 194 HOH HOH . P 4 HOH B 60 195 195 HOH HOH . P 4 HOH B 61 196 196 HOH HOH . P 4 HOH B 62 197 197 HOH HOH . P 4 HOH B 63 198 54 HOH HOH . P 4 HOH B 64 199 56 HOH HOH . P 4 HOH B 65 205 58 HOH HOH . P 4 HOH B 66 206 59 HOH HOH . P 4 HOH B 67 207 60 HOH HOH . P 4 HOH B 68 208 61 HOH HOH . P 4 HOH B 69 209 63 HOH HOH . P 4 HOH B 70 210 64 HOH HOH . P 4 HOH B 71 211 65 HOH HOH . P 4 HOH B 72 212 67 HOH HOH . P 4 HOH B 73 213 213 HOH HOH . P 4 HOH B 74 214 214 HOH HOH . P 4 HOH B 75 215 215 HOH HOH . P 4 HOH B 76 216 216 HOH HOH . P 4 HOH B 77 217 217 HOH HOH . P 4 HOH B 78 218 218 HOH HOH . P 4 HOH B 79 219 219 HOH HOH . P 4 HOH B 80 220 220 HOH HOH . P 4 HOH B 81 221 221 HOH HOH . P 4 HOH B 82 222 222 HOH HOH . P 4 HOH B 83 223 223 HOH HOH . P 4 HOH B 84 224 224 HOH HOH . P 4 HOH B 85 225 225 HOH HOH . P 4 HOH B 86 226 226 HOH HOH . P 4 HOH B 87 227 72 HOH HOH . P 4 HOH B 88 228 73 HOH HOH . P 4 HOH B 89 229 75 HOH HOH . P 4 HOH B 90 230 76 HOH HOH . P 4 HOH B 91 231 79 HOH HOH . P 4 HOH B 92 232 80 HOH HOH . P 4 HOH B 93 233 233 HOH HOH . P 4 HOH B 94 234 83 HOH HOH . P 4 HOH B 95 235 85 HOH HOH . P 4 HOH B 96 236 236 HOH HOH . P 4 HOH B 97 237 86 HOH HOH . P 4 HOH B 98 238 238 HOH HOH . P 4 HOH B 99 239 239 HOH HOH . P 4 HOH B 100 240 240 HOH HOH . P 4 HOH B 101 241 241 HOH HOH . P 4 HOH B 102 242 242 HOH HOH . P 4 HOH B 103 243 243 HOH HOH . P 4 HOH B 104 244 244 HOH HOH . P 4 HOH B 105 245 245 HOH HOH . P 4 HOH B 106 246 90 HOH HOH . P 4 HOH B 107 247 247 HOH HOH . P 4 HOH B 108 248 248 HOH HOH . P 4 HOH B 109 249 249 HOH HOH . P 4 HOH B 110 250 250 HOH HOH . P 4 HOH B 111 251 251 HOH HOH . P 4 HOH B 112 252 91 HOH HOH . P 4 HOH B 113 253 92 HOH HOH . P 4 HOH B 114 254 95 HOH HOH . P 4 HOH B 115 255 255 HOH HOH . P 4 HOH B 116 256 98 HOH HOH . P 4 HOH B 117 257 99 HOH HOH . P 4 HOH B 118 258 100 HOH HOH . P 4 HOH B 119 259 101 HOH HOH . P 4 HOH B 120 260 102 HOH HOH . P 4 HOH B 121 261 104 HOH HOH . P 4 HOH B 122 262 109 HOH HOH . P 4 HOH B 123 263 111 HOH HOH . P 4 HOH B 124 264 112 HOH HOH . P 4 HOH B 125 265 265 HOH HOH . P 4 HOH B 126 266 266 HOH HOH . P 4 HOH B 127 267 267 HOH HOH . P 4 HOH B 128 268 268 HOH HOH . P 4 HOH B 129 269 269 HOH HOH . P 4 HOH B 130 270 270 HOH HOH . P 4 HOH B 131 271 271 HOH HOH . P 4 HOH B 132 272 272 HOH HOH . P 4 HOH B 133 273 273 HOH HOH . P 4 HOH B 134 274 274 HOH HOH . P 4 HOH B 135 275 275 HOH HOH . P 4 HOH B 136 276 114 HOH HOH . P 4 HOH B 137 277 115 HOH HOH . P 4 HOH B 138 278 278 HOH HOH . P 4 HOH B 139 279 119 HOH HOH . P 4 HOH B 140 280 120 HOH HOH . P 4 HOH B 141 281 121 HOH HOH . P 4 HOH B 142 282 122 HOH HOH . P 4 HOH B 143 283 127 HOH HOH . P 4 HOH B 144 284 130 HOH HOH . P 4 HOH B 145 285 133 HOH HOH . P 4 HOH B 146 286 150 HOH HOH . P 4 HOH B 147 287 287 HOH HOH . P 4 HOH B 148 288 288 HOH HOH . P 4 HOH B 149 289 289 HOH HOH . P 4 HOH B 150 290 290 HOH HOH . P 4 HOH B 151 291 291 HOH HOH . P 4 HOH B 152 292 201 HOH HOH . P 4 HOH B 153 293 204 HOH HOH . P 4 HOH B 154 294 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 1.987 11.4 31.054 1 19.87 ? C1 EDO 200 B 1 HETATM 2 O O1 EDO . . . J 3 0.684 11.983 31.003 1 19.1 ? O1 EDO 200 B 1 HETATM 3 C C2 EDO . . . J 3 1.909 10.092 31.814 1 19.88 ? C2 EDO 200 B 1 HETATM 4 O O2 EDO . . . J 3 1.636 10.35 33.195 1 21.87 ? O2 EDO 200 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #