data_3P1C
#
_model_server_result.job_id            E5VfqsKd_our16JmIOUYBw 
_model_server_result.datetime_utc      '2024-11-22 11:53:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p1c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2}' 
#
_entry.id    3P1C 
#
_exptl.entry_id    3P1C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.224 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N(6)-ACETYLLYSINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3P1C 
_cell.length_a            121.687 
_cell.length_b            121.687 
_cell.length_c            39.955 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P1C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F K K . B K 1 1_555 H O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc2 F K K . B K 1 1_555 B O TRP 87 B TRP 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc3 F K K . B K 1 1_555 B O LEU 88 B LEU 1166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? 
metalc ? metalc4 F K K . B K 1 1_555 B O ASN 90 B ASN 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
#
_chem_comp.formula           'C8 H16 N2 O3' 
_chem_comp.formula_weight    188.224 
_chem_comp.id                ALY 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N(6)-ACETYLLYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH CH ALY doub 13 n n 
CH CH3 ALY sing 14 n n 
CH NZ ALY sing 15 n n 
CH3 HH31 ALY sing 16 n n 
CH3 HH32 ALY sing 17 n n 
CH3 HH33 ALY sing 18 n n 
NZ CE ALY sing 19 n n 
NZ HZ ALY sing 20 n n 
CE CD ALY sing 21 n n 
CE HE3 ALY sing 22 n n 
CE HE2 ALY sing 23 n n 
CD CG ALY sing 24 n n 
CD HD3 ALY sing 25 n n 
CD HD2 ALY sing 26 n n 
CG CB ALY sing 27 n n 
CG HG3 ALY sing 28 n n 
CG HG2 ALY sing 29 n n 
CB CA ALY sing 30 n n 
CB HB3 ALY sing 31 n n 
CB HB2 ALY sing 32 n n 
CA N ALY sing 33 n n 
CA C ALY sing 34 n n 
CA HA ALY sing 35 n n 
N H ALY sing 36 n n 
N H2 ALY sing 37 n n 
C O ALY doub 38 n n 
C OXT ALY sing 39 n n 
OXT HXT ALY sing 40 n n 
#
_atom_sites.entry_id                     3P1C 
_atom_sites.fract_transf_matrix[1][1]    0.008218 
_atom_sites.fract_transf_matrix[1][2]    0.004745 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ALY A 1 1 1 ALY ALY . 
D 3 SCN A 1 1198 1 SCN SCN . 
E 2 ALY B 1 2 2 ALY ALY . 
F 4 K B 1 1 1 K K . 
G 5 HOH A 1 2 2 HOH HOH . 
G 5 HOH A 2 3 3 HOH HOH . 
G 5 HOH A 3 4 4 HOH HOH . 
G 5 HOH A 4 5 5 HOH HOH . 
G 5 HOH A 5 6 6 HOH HOH . 
G 5 HOH A 6 7 7 HOH HOH . 
G 5 HOH A 7 8 8 HOH HOH . 
G 5 HOH A 8 9 9 HOH HOH . 
G 5 HOH A 9 10 10 HOH HOH . 
G 5 HOH A 10 11 11 HOH HOH . 
G 5 HOH A 11 12 12 HOH HOH . 
G 5 HOH A 12 13 13 HOH HOH . 
G 5 HOH A 13 14 14 HOH HOH . 
G 5 HOH A 14 15 15 HOH HOH . 
G 5 HOH A 15 16 16 HOH HOH . 
G 5 HOH A 16 17 17 HOH HOH . 
G 5 HOH A 17 18 18 HOH HOH . 
G 5 HOH A 18 19 19 HOH HOH . 
G 5 HOH A 19 21 21 HOH HOH . 
G 5 HOH A 20 22 22 HOH HOH . 
G 5 HOH A 21 24 24 HOH HOH . 
G 5 HOH A 22 25 25 HOH HOH . 
G 5 HOH A 23 26 26 HOH HOH . 
G 5 HOH A 24 29 29 HOH HOH . 
G 5 HOH A 25 30 30 HOH HOH . 
G 5 HOH A 26 33 33 HOH HOH . 
G 5 HOH A 27 34 34 HOH HOH . 
G 5 HOH A 28 35 35 HOH HOH . 
G 5 HOH A 29 36 36 HOH HOH . 
G 5 HOH A 30 37 37 HOH HOH . 
G 5 HOH A 31 40 40 HOH HOH . 
G 5 HOH A 32 41 41 HOH HOH . 
G 5 HOH A 33 42 42 HOH HOH . 
G 5 HOH A 34 44 44 HOH HOH . 
G 5 HOH A 35 48 48 HOH HOH . 
G 5 HOH A 36 50 50 HOH HOH . 
G 5 HOH A 37 53 53 HOH HOH . 
G 5 HOH A 38 56 56 HOH HOH . 
G 5 HOH A 39 57 57 HOH HOH . 
G 5 HOH A 40 58 58 HOH HOH . 
G 5 HOH A 41 61 61 HOH HOH . 
G 5 HOH A 42 63 63 HOH HOH . 
G 5 HOH A 43 66 66 HOH HOH . 
G 5 HOH A 44 67 67 HOH HOH . 
G 5 HOH A 45 69 69 HOH HOH . 
G 5 HOH A 46 71 71 HOH HOH . 
G 5 HOH A 47 74 74 HOH HOH . 
G 5 HOH A 48 75 75 HOH HOH . 
G 5 HOH A 49 79 79 HOH HOH . 
G 5 HOH A 50 80 80 HOH HOH . 
G 5 HOH A 51 81 81 HOH HOH . 
G 5 HOH A 52 82 82 HOH HOH . 
G 5 HOH A 53 84 84 HOH HOH . 
G 5 HOH A 54 85 85 HOH HOH . 
G 5 HOH A 55 87 87 HOH HOH . 
G 5 HOH A 56 92 92 HOH HOH . 
G 5 HOH A 57 93 93 HOH HOH . 
G 5 HOH A 58 94 94 HOH HOH . 
G 5 HOH A 59 96 96 HOH HOH . 
G 5 HOH A 60 98 98 HOH HOH . 
G 5 HOH A 61 99 99 HOH HOH . 
G 5 HOH A 62 100 100 HOH HOH . 
G 5 HOH A 63 101 101 HOH HOH . 
G 5 HOH A 64 104 104 HOH HOH . 
G 5 HOH A 65 105 105 HOH HOH . 
G 5 HOH A 66 106 106 HOH HOH . 
G 5 HOH A 67 107 107 HOH HOH . 
G 5 HOH A 68 110 110 HOH HOH . 
G 5 HOH A 69 111 111 HOH HOH . 
G 5 HOH A 70 112 112 HOH HOH . 
G 5 HOH A 71 113 113 HOH HOH . 
G 5 HOH A 72 114 114 HOH HOH . 
G 5 HOH A 73 115 115 HOH HOH . 
G 5 HOH A 74 116 116 HOH HOH . 
G 5 HOH A 75 117 117 HOH HOH . 
G 5 HOH A 76 118 118 HOH HOH . 
G 5 HOH A 77 121 121 HOH HOH . 
G 5 HOH A 78 122 122 HOH HOH . 
G 5 HOH A 79 123 123 HOH HOH . 
G 5 HOH A 80 124 124 HOH HOH . 
G 5 HOH A 81 125 125 HOH HOH . 
G 5 HOH A 82 126 126 HOH HOH . 
G 5 HOH A 83 127 127 HOH HOH . 
G 5 HOH A 84 129 129 HOH HOH . 
G 5 HOH A 85 132 132 HOH HOH . 
G 5 HOH A 86 133 133 HOH HOH . 
G 5 HOH A 87 134 134 HOH HOH . 
G 5 HOH A 88 135 135 HOH HOH . 
G 5 HOH A 89 136 136 HOH HOH . 
G 5 HOH A 90 137 137 HOH HOH . 
G 5 HOH A 91 139 139 HOH HOH . 
G 5 HOH A 92 143 143 HOH HOH . 
G 5 HOH A 93 147 147 HOH HOH . 
G 5 HOH A 94 148 148 HOH HOH . 
G 5 HOH A 95 150 150 HOH HOH . 
G 5 HOH A 96 152 152 HOH HOH . 
G 5 HOH A 97 153 153 HOH HOH . 
G 5 HOH A 98 155 155 HOH HOH . 
G 5 HOH A 99 161 161 HOH HOH . 
G 5 HOH A 100 163 163 HOH HOH . 
G 5 HOH A 101 166 166 HOH HOH . 
G 5 HOH A 102 167 167 HOH HOH . 
G 5 HOH A 103 169 169 HOH HOH . 
G 5 HOH A 104 171 171 HOH HOH . 
G 5 HOH A 105 172 172 HOH HOH . 
G 5 HOH A 106 174 174 HOH HOH . 
G 5 HOH A 107 175 175 HOH HOH . 
G 5 HOH A 108 176 176 HOH HOH . 
H 5 HOH B 1 20 20 HOH HOH . 
H 5 HOH B 2 23 23 HOH HOH . 
H 5 HOH B 3 27 27 HOH HOH . 
H 5 HOH B 4 28 28 HOH HOH . 
H 5 HOH B 5 31 31 HOH HOH . 
H 5 HOH B 6 32 32 HOH HOH . 
H 5 HOH B 7 38 38 HOH HOH . 
H 5 HOH B 8 39 39 HOH HOH . 
H 5 HOH B 9 43 43 HOH HOH . 
H 5 HOH B 10 45 45 HOH HOH . 
H 5 HOH B 11 46 46 HOH HOH . 
H 5 HOH B 12 47 47 HOH HOH . 
H 5 HOH B 13 49 49 HOH HOH . 
H 5 HOH B 14 51 51 HOH HOH . 
H 5 HOH B 15 52 52 HOH HOH . 
H 5 HOH B 16 54 54 HOH HOH . 
H 5 HOH B 17 55 55 HOH HOH . 
H 5 HOH B 18 59 59 HOH HOH . 
H 5 HOH B 19 60 60 HOH HOH . 
H 5 HOH B 20 62 62 HOH HOH . 
H 5 HOH B 21 64 64 HOH HOH . 
H 5 HOH B 22 65 65 HOH HOH . 
H 5 HOH B 23 68 68 HOH HOH . 
H 5 HOH B 24 70 70 HOH HOH . 
H 5 HOH B 25 72 72 HOH HOH . 
H 5 HOH B 26 73 73 HOH HOH . 
H 5 HOH B 27 76 76 HOH HOH . 
H 5 HOH B 28 77 77 HOH HOH . 
H 5 HOH B 29 78 78 HOH HOH . 
H 5 HOH B 30 83 83 HOH HOH . 
H 5 HOH B 31 86 86 HOH HOH . 
H 5 HOH B 32 88 88 HOH HOH . 
H 5 HOH B 33 89 89 HOH HOH . 
H 5 HOH B 34 90 90 HOH HOH . 
H 5 HOH B 35 91 91 HOH HOH . 
H 5 HOH B 36 95 95 HOH HOH . 
H 5 HOH B 37 97 97 HOH HOH . 
H 5 HOH B 38 102 102 HOH HOH . 
H 5 HOH B 39 103 103 HOH HOH . 
H 5 HOH B 40 108 108 HOH HOH . 
H 5 HOH B 41 109 109 HOH HOH . 
H 5 HOH B 42 119 119 HOH HOH . 
H 5 HOH B 43 120 120 HOH HOH . 
H 5 HOH B 44 128 128 HOH HOH . 
H 5 HOH B 45 130 130 HOH HOH . 
H 5 HOH B 46 131 131 HOH HOH . 
H 5 HOH B 47 138 138 HOH HOH . 
H 5 HOH B 48 140 140 HOH HOH . 
H 5 HOH B 49 141 141 HOH HOH . 
H 5 HOH B 50 142 142 HOH HOH . 
H 5 HOH B 51 144 144 HOH HOH . 
H 5 HOH B 52 145 145 HOH HOH . 
H 5 HOH B 53 146 146 HOH HOH . 
H 5 HOH B 54 149 149 HOH HOH . 
H 5 HOH B 55 151 151 HOH HOH . 
H 5 HOH B 56 154 154 HOH HOH . 
H 5 HOH B 57 156 156 HOH HOH . 
H 5 HOH B 58 157 157 HOH HOH . 
H 5 HOH B 59 158 158 HOH HOH . 
H 5 HOH B 60 159 159 HOH HOH . 
H 5 HOH B 61 160 160 HOH HOH . 
H 5 HOH B 62 162 162 HOH HOH . 
H 5 HOH B 63 164 164 HOH HOH . 
H 5 HOH B 64 165 165 HOH HOH . 
H 5 HOH B 65 168 168 HOH HOH . 
H 5 HOH B 66 170 170 HOH HOH . 
H 5 HOH B 67 173 173 HOH HOH . 
H 5 HOH B 68 177 177 HOH HOH . 
H 5 HOH B 69 178 178 HOH HOH . 
H 5 HOH B 70 179 179 HOH HOH . 
H 5 HOH B 71 180 180 HOH HOH . 
H 5 HOH B 72 181 181 HOH HOH . 
H 5 HOH B 73 1198 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH ALY . . . E 2 -2.633 -17.356 11.13 1 31.65 ? OH ALY 2 B 1 
HETATM 2 C CH ALY . . . E 2 -3.741 -17.141 10.653 1 31.49 ? CH ALY 2 B 1 
HETATM 3 C CH3 ALY . . . E 2 -3.863 -16.882 9.152 1 46.94 ? CH3 ALY 2 B 1 
HETATM 4 N NZ ALY . . . E 2 -4.892 -17.143 11.343 1 45.84 ? NZ ALY 2 B 1 
HETATM 5 C CE ALY . . . E 2 -4.996 -17.405 12.804 1 42.37 ? CE ALY 2 B 1 
HETATM 6 C CD ALY . . . E 2 -6.291 -18.174 13.12 1 53.17 ? CD ALY 2 B 1 
HETATM 7 C CG ALY . . . E 2 -6.337 -18.751 14.546 1 59.57 ? CG ALY 2 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#