data_3P1D
#
_model_server_result.job_id            B3X8u7m6RDmocaqqE_2TDw 
_model_server_result.datetime_utc      '2024-10-18 04:25:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    3P1D 
#
_exptl.entry_id    3P1D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              99.131 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methylpyrrolidin-2-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3P1D 
_cell.length_a            121.549 
_cell.length_b            121.549 
_cell.length_c            40.23 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E K K . B K 1 1_555 H O HOH . B HOH 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 E K K . B K 1 1_555 B O TRP 87 B TRP 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? 
metalc ? metalc3 E K K . B K 1 1_555 B O LEU 88 B LEU 1166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.068 ? 
metalc ? metalc4 E K K . B K 1 1_555 B O ASN 90 B ASN 1168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
#
_chem_comp.formula           'C5 H9 N O' 
_chem_comp.formula_weight    99.131 
_chem_comp.id                MB3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methylpyrrolidin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA NAG MB3 sing 197 n n 
CAA HAA MB3 sing 198 n n 
CAA HAAA MB3 sing 199 n n 
CAA HAAB MB3 sing 200 n n 
CAF OAB MB3 doub 201 n n 
CAE CAC MB3 sing 202 n n 
CAC CAD MB3 sing 203 n n 
CAC HAC MB3 sing 204 n n 
CAC HACA MB3 sing 205 n n 
CAF CAD MB3 sing 206 n n 
CAD HAD MB3 sing 207 n n 
CAD HADA MB3 sing 208 n n 
NAG CAE MB3 sing 209 n n 
CAE HAE MB3 sing 210 n n 
CAE HAEA MB3 sing 211 n n 
NAG CAF MB3 sing 212 n n 
#
_atom_sites.entry_id                     3P1D 
_atom_sites.fract_transf_matrix[1][1]    0.008227 
_atom_sites.fract_transf_matrix[1][2]    0.00475 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SCN A 1 1 1 SCN SCN . 
D 3 MB3 A 1 1198 1 MB3 MB3 . 
E 4 K B 1 1 1 K K . 
F 3 MB3 B 1 2 2 MB3 MB3 . 
G 5 HOH A 1 2 2 HOH HOH . 
G 5 HOH A 2 4 4 HOH HOH . 
G 5 HOH A 3 7 7 HOH HOH . 
G 5 HOH A 4 9 9 HOH HOH . 
G 5 HOH A 5 10 10 HOH HOH . 
G 5 HOH A 6 12 12 HOH HOH . 
G 5 HOH A 7 13 13 HOH HOH . 
G 5 HOH A 8 14 14 HOH HOH . 
G 5 HOH A 9 15 15 HOH HOH . 
G 5 HOH A 10 16 16 HOH HOH . 
G 5 HOH A 11 17 17 HOH HOH . 
G 5 HOH A 12 18 18 HOH HOH . 
G 5 HOH A 13 19 19 HOH HOH . 
G 5 HOH A 14 20 20 HOH HOH . 
G 5 HOH A 15 22 22 HOH HOH . 
G 5 HOH A 16 23 23 HOH HOH . 
G 5 HOH A 17 26 26 HOH HOH . 
G 5 HOH A 18 28 28 HOH HOH . 
G 5 HOH A 19 29 29 HOH HOH . 
G 5 HOH A 20 30 30 HOH HOH . 
G 5 HOH A 21 31 31 HOH HOH . 
G 5 HOH A 22 33 33 HOH HOH . 
G 5 HOH A 23 34 34 HOH HOH . 
G 5 HOH A 24 35 35 HOH HOH . 
G 5 HOH A 25 37 37 HOH HOH . 
G 5 HOH A 26 38 38 HOH HOH . 
G 5 HOH A 27 40 40 HOH HOH . 
G 5 HOH A 28 41 41 HOH HOH . 
G 5 HOH A 29 43 43 HOH HOH . 
G 5 HOH A 30 46 46 HOH HOH . 
G 5 HOH A 31 47 47 HOH HOH . 
G 5 HOH A 32 48 48 HOH HOH . 
G 5 HOH A 33 49 49 HOH HOH . 
G 5 HOH A 34 50 50 HOH HOH . 
G 5 HOH A 35 51 51 HOH HOH . 
G 5 HOH A 36 52 52 HOH HOH . 
G 5 HOH A 37 55 55 HOH HOH . 
G 5 HOH A 38 58 58 HOH HOH . 
G 5 HOH A 39 59 59 HOH HOH . 
G 5 HOH A 40 61 61 HOH HOH . 
G 5 HOH A 41 62 62 HOH HOH . 
G 5 HOH A 42 67 67 HOH HOH . 
G 5 HOH A 43 68 68 HOH HOH . 
G 5 HOH A 44 70 70 HOH HOH . 
G 5 HOH A 45 71 71 HOH HOH . 
G 5 HOH A 46 72 72 HOH HOH . 
G 5 HOH A 47 73 73 HOH HOH . 
G 5 HOH A 48 74 74 HOH HOH . 
G 5 HOH A 49 78 78 HOH HOH . 
G 5 HOH A 50 79 79 HOH HOH . 
G 5 HOH A 51 83 83 HOH HOH . 
G 5 HOH A 52 85 85 HOH HOH . 
G 5 HOH A 53 88 88 HOH HOH . 
G 5 HOH A 54 89 89 HOH HOH . 
G 5 HOH A 55 90 90 HOH HOH . 
G 5 HOH A 56 92 92 HOH HOH . 
G 5 HOH A 57 93 93 HOH HOH . 
G 5 HOH A 58 94 94 HOH HOH . 
G 5 HOH A 59 96 96 HOH HOH . 
G 5 HOH A 60 99 99 HOH HOH . 
G 5 HOH A 61 102 102 HOH HOH . 
G 5 HOH A 62 103 103 HOH HOH . 
G 5 HOH A 63 104 104 HOH HOH . 
G 5 HOH A 64 105 105 HOH HOH . 
G 5 HOH A 65 106 106 HOH HOH . 
G 5 HOH A 66 107 107 HOH HOH . 
G 5 HOH A 67 108 108 HOH HOH . 
G 5 HOH A 68 110 110 HOH HOH . 
G 5 HOH A 69 111 111 HOH HOH . 
G 5 HOH A 70 112 112 HOH HOH . 
G 5 HOH A 71 115 115 HOH HOH . 
G 5 HOH A 72 116 116 HOH HOH . 
G 5 HOH A 73 117 117 HOH HOH . 
G 5 HOH A 74 118 118 HOH HOH . 
G 5 HOH A 75 121 121 HOH HOH . 
G 5 HOH A 76 122 122 HOH HOH . 
G 5 HOH A 77 123 123 HOH HOH . 
G 5 HOH A 78 124 124 HOH HOH . 
G 5 HOH A 79 127 127 HOH HOH . 
G 5 HOH A 80 128 128 HOH HOH . 
G 5 HOH A 81 133 133 HOH HOH . 
G 5 HOH A 82 134 134 HOH HOH . 
G 5 HOH A 83 136 136 HOH HOH . 
G 5 HOH A 84 138 138 HOH HOH . 
G 5 HOH A 85 140 140 HOH HOH . 
G 5 HOH A 86 143 143 HOH HOH . 
G 5 HOH A 87 145 145 HOH HOH . 
G 5 HOH A 88 147 147 HOH HOH . 
G 5 HOH A 89 148 148 HOH HOH . 
G 5 HOH A 90 149 149 HOH HOH . 
G 5 HOH A 91 150 150 HOH HOH . 
G 5 HOH A 92 151 151 HOH HOH . 
G 5 HOH A 93 152 152 HOH HOH . 
G 5 HOH A 94 153 153 HOH HOH . 
G 5 HOH A 95 154 154 HOH HOH . 
G 5 HOH A 96 155 155 HOH HOH . 
G 5 HOH A 97 156 156 HOH HOH . 
G 5 HOH A 98 158 158 HOH HOH . 
G 5 HOH A 99 159 159 HOH HOH . 
G 5 HOH A 100 160 160 HOH HOH . 
G 5 HOH A 101 168 168 HOH HOH . 
G 5 HOH A 102 1199 1 HOH HOH . 
H 5 HOH B 1 11 11 HOH HOH . 
H 5 HOH B 2 21 21 HOH HOH . 
H 5 HOH B 3 27 27 HOH HOH . 
H 5 HOH B 4 32 32 HOH HOH . 
H 5 HOH B 5 36 36 HOH HOH . 
H 5 HOH B 6 39 39 HOH HOH . 
H 5 HOH B 7 42 42 HOH HOH . 
H 5 HOH B 8 45 45 HOH HOH . 
H 5 HOH B 9 53 53 HOH HOH . 
H 5 HOH B 10 54 54 HOH HOH . 
H 5 HOH B 11 56 56 HOH HOH . 
H 5 HOH B 12 57 57 HOH HOH . 
H 5 HOH B 13 60 60 HOH HOH . 
H 5 HOH B 14 63 63 HOH HOH . 
H 5 HOH B 15 64 64 HOH HOH . 
H 5 HOH B 16 65 65 HOH HOH . 
H 5 HOH B 17 66 66 HOH HOH . 
H 5 HOH B 18 69 69 HOH HOH . 
H 5 HOH B 19 75 75 HOH HOH . 
H 5 HOH B 20 76 76 HOH HOH . 
H 5 HOH B 21 77 77 HOH HOH . 
H 5 HOH B 22 80 80 HOH HOH . 
H 5 HOH B 23 82 82 HOH HOH . 
H 5 HOH B 24 84 84 HOH HOH . 
H 5 HOH B 25 86 86 HOH HOH . 
H 5 HOH B 26 87 87 HOH HOH . 
H 5 HOH B 27 91 91 HOH HOH . 
H 5 HOH B 28 95 95 HOH HOH . 
H 5 HOH B 29 97 97 HOH HOH . 
H 5 HOH B 30 98 98 HOH HOH . 
H 5 HOH B 31 101 101 HOH HOH . 
H 5 HOH B 32 109 109 HOH HOH . 
H 5 HOH B 33 113 113 HOH HOH . 
H 5 HOH B 34 114 114 HOH HOH . 
H 5 HOH B 35 120 120 HOH HOH . 
H 5 HOH B 36 125 125 HOH HOH . 
H 5 HOH B 37 129 129 HOH HOH . 
H 5 HOH B 38 130 130 HOH HOH . 
H 5 HOH B 39 131 131 HOH HOH . 
H 5 HOH B 40 132 132 HOH HOH . 
H 5 HOH B 41 135 135 HOH HOH . 
H 5 HOH B 42 137 137 HOH HOH . 
H 5 HOH B 43 139 139 HOH HOH . 
H 5 HOH B 44 141 141 HOH HOH . 
H 5 HOH B 45 144 144 HOH HOH . 
H 5 HOH B 46 146 146 HOH HOH . 
H 5 HOH B 47 157 157 HOH HOH . 
H 5 HOH B 48 161 161 HOH HOH . 
H 5 HOH B 49 162 162 HOH HOH . 
H 5 HOH B 50 163 163 HOH HOH . 
H 5 HOH B 51 164 164 HOH HOH . 
H 5 HOH B 52 165 165 HOH HOH . 
H 5 HOH B 53 166 166 HOH HOH . 
H 5 HOH B 54 167 167 HOH HOH . 
H 5 HOH B 55 169 169 HOH HOH . 
H 5 HOH B 56 170 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA MB3 . . . F 3 -13.464 -11.852 -9.067 1 35.93 ? CAA MB3 2 B 1 
HETATM 2 O OAB MB3 . . . F 3 -13.319 -10.717 -11.623 1 31.36 ? OAB MB3 2 B 1 
HETATM 3 C CAC MB3 . . . F 3 -11.583 -13.829 -11.685 1 41.73 ? CAC MB3 2 B 1 
HETATM 4 C CAD MB3 . . . F 3 -12.27 -12.732 -12.517 1 45.29 ? CAD MB3 2 B 1 
HETATM 5 C CAE MB3 . . . F 3 -12.311 -13.812 -10.32 1 49.14 ? CAE MB3 2 B 1 
HETATM 6 C CAF MB3 . . . F 3 -12.879 -11.848 -11.437 1 39.96 ? CAF MB3 2 B 1 
HETATM 7 N NAG MB3 . . . F 3 -12.928 -12.473 -10.26 1 45.22 ? NAG MB3 2 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#