data_3P1P # _model_server_result.job_id 5nAHw41J2xnTm9iZ0MmgEw _model_server_result.datetime_utc '2024-11-07 02:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 3P1P # _exptl.entry_id 3P1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P1P _cell.length_a 80.21 _cell.length_b 109.41 _cell.length_c 61.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 4 P LYS 372 1_555 B N SEP 5 P SEP 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 B C SEP 5 P SEP 373 1_555 B N VAL 6 P VAL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 E MG MG . A MG 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 A OE1 GLU 80 A GLU 75 1_555 F MG MG . A MG 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc3 A OE2 GLU 193 A GLU 188 1_555 D MG MG . A MG 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 D MG MG . A MG 250 1_555 G O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc5 D MG MG . A MG 250 1_555 G O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc6 E MG MG . A MG 251 1_555 G O HOH . A HOH 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc7 E MG MG . A MG 251 1_555 G O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc8 F MG MG . A MG 252 1_555 G O HOH . A HOH 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc9 F MG MG . A MG 252 1_555 G O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P1P _atom_sites.fract_transf_matrix[1][1] 0.012467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 249 249 CL CL . D 4 MG A 1 250 250 MG MG . E 4 MG A 1 251 251 MG MG . F 4 MG A 1 252 252 MG MG . G 5 HOH A 1 253 253 HOH HOH . G 5 HOH A 2 254 254 HOH HOH . G 5 HOH A 3 255 255 HOH HOH . G 5 HOH A 4 256 256 HOH HOH . G 5 HOH A 5 257 257 HOH HOH . G 5 HOH A 6 258 258 HOH HOH . G 5 HOH A 7 259 259 HOH HOH . G 5 HOH A 8 260 260 HOH HOH . G 5 HOH A 9 261 261 HOH HOH . G 5 HOH A 10 262 262 HOH HOH . G 5 HOH A 11 263 263 HOH HOH . G 5 HOH A 12 264 264 HOH HOH . G 5 HOH A 13 265 265 HOH HOH . G 5 HOH A 14 266 266 HOH HOH . G 5 HOH A 15 267 267 HOH HOH . G 5 HOH A 16 268 268 HOH HOH . G 5 HOH A 17 269 269 HOH HOH . G 5 HOH A 18 270 270 HOH HOH . G 5 HOH A 19 271 271 HOH HOH . G 5 HOH A 20 272 272 HOH HOH . G 5 HOH A 21 273 273 HOH HOH . G 5 HOH A 22 274 274 HOH HOH . G 5 HOH A 23 275 275 HOH HOH . G 5 HOH A 24 276 276 HOH HOH . G 5 HOH A 25 277 277 HOH HOH . G 5 HOH A 26 278 278 HOH HOH . G 5 HOH A 27 279 279 HOH HOH . G 5 HOH A 28 280 280 HOH HOH . G 5 HOH A 29 281 281 HOH HOH . G 5 HOH A 30 282 282 HOH HOH . G 5 HOH A 31 283 283 HOH HOH . G 5 HOH A 32 284 284 HOH HOH . G 5 HOH A 33 285 285 HOH HOH . G 5 HOH A 34 286 286 HOH HOH . G 5 HOH A 35 287 287 HOH HOH . G 5 HOH A 36 288 288 HOH HOH . G 5 HOH A 37 289 289 HOH HOH . G 5 HOH A 38 290 290 HOH HOH . G 5 HOH A 39 291 291 HOH HOH . G 5 HOH A 40 292 292 HOH HOH . G 5 HOH A 41 293 293 HOH HOH . G 5 HOH A 42 294 294 HOH HOH . G 5 HOH A 43 295 295 HOH HOH . G 5 HOH A 44 296 296 HOH HOH . G 5 HOH A 45 297 297 HOH HOH . G 5 HOH A 46 298 298 HOH HOH . G 5 HOH A 47 299 299 HOH HOH . G 5 HOH A 48 300 300 HOH HOH . G 5 HOH A 49 301 301 HOH HOH . G 5 HOH A 50 302 302 HOH HOH . G 5 HOH A 51 303 303 HOH HOH . G 5 HOH A 52 304 304 HOH HOH . G 5 HOH A 53 305 305 HOH HOH . G 5 HOH A 54 306 306 HOH HOH . G 5 HOH A 55 307 307 HOH HOH . G 5 HOH A 56 308 308 HOH HOH . G 5 HOH A 57 309 309 HOH HOH . G 5 HOH A 58 310 310 HOH HOH . G 5 HOH A 59 311 311 HOH HOH . G 5 HOH A 60 312 312 HOH HOH . G 5 HOH A 61 313 313 HOH HOH . G 5 HOH A 62 314 314 HOH HOH . G 5 HOH A 63 315 315 HOH HOH . G 5 HOH A 64 316 316 HOH HOH . G 5 HOH A 65 317 317 HOH HOH . G 5 HOH A 66 318 318 HOH HOH . G 5 HOH A 67 319 319 HOH HOH . G 5 HOH A 68 320 320 HOH HOH . G 5 HOH A 69 321 321 HOH HOH . G 5 HOH A 70 322 322 HOH HOH . G 5 HOH A 71 323 323 HOH HOH . G 5 HOH A 72 324 324 HOH HOH . G 5 HOH A 73 325 325 HOH HOH . G 5 HOH A 74 326 326 HOH HOH . G 5 HOH A 75 327 327 HOH HOH . G 5 HOH A 76 328 328 HOH HOH . G 5 HOH A 77 329 329 HOH HOH . G 5 HOH A 78 330 330 HOH HOH . G 5 HOH A 79 331 331 HOH HOH . G 5 HOH A 80 332 332 HOH HOH . G 5 HOH A 81 333 333 HOH HOH . G 5 HOH A 82 334 334 HOH HOH . G 5 HOH A 83 335 335 HOH HOH . G 5 HOH A 84 336 336 HOH HOH . G 5 HOH A 85 337 337 HOH HOH . G 5 HOH A 86 338 338 HOH HOH . G 5 HOH A 87 339 339 HOH HOH . G 5 HOH A 88 340 340 HOH HOH . G 5 HOH A 89 341 341 HOH HOH . G 5 HOH A 90 342 342 HOH HOH . G 5 HOH A 91 343 343 HOH HOH . G 5 HOH A 92 344 344 HOH HOH . G 5 HOH A 93 345 345 HOH HOH . G 5 HOH A 94 346 346 HOH HOH . G 5 HOH A 95 347 347 HOH HOH . G 5 HOH A 96 348 348 HOH HOH . G 5 HOH A 97 349 349 HOH HOH . G 5 HOH A 98 350 350 HOH HOH . G 5 HOH A 99 351 351 HOH HOH . G 5 HOH A 100 352 352 HOH HOH . G 5 HOH A 101 353 353 HOH HOH . G 5 HOH A 102 354 354 HOH HOH . G 5 HOH A 103 355 355 HOH HOH . G 5 HOH A 104 356 356 HOH HOH . G 5 HOH A 105 357 357 HOH HOH . G 5 HOH A 106 358 358 HOH HOH . G 5 HOH A 107 359 359 HOH HOH . G 5 HOH A 108 360 360 HOH HOH . G 5 HOH A 109 361 361 HOH HOH . G 5 HOH A 110 362 362 HOH HOH . G 5 HOH A 111 363 363 HOH HOH . G 5 HOH A 112 364 364 HOH HOH . G 5 HOH A 113 365 365 HOH HOH . G 5 HOH A 114 366 366 HOH HOH . G 5 HOH A 115 367 367 HOH HOH . G 5 HOH A 116 368 368 HOH HOH . G 5 HOH A 117 369 369 HOH HOH . G 5 HOH A 118 370 370 HOH HOH . G 5 HOH A 119 371 371 HOH HOH . G 5 HOH A 120 372 372 HOH HOH . G 5 HOH A 121 373 373 HOH HOH . G 5 HOH A 122 374 374 HOH HOH . G 5 HOH A 123 375 375 HOH HOH . G 5 HOH A 124 376 376 HOH HOH . G 5 HOH A 125 377 377 HOH HOH . G 5 HOH A 126 378 378 HOH HOH . G 5 HOH A 127 379 379 HOH HOH . G 5 HOH A 128 380 380 HOH HOH . G 5 HOH A 129 381 381 HOH HOH . G 5 HOH A 130 382 382 HOH HOH . G 5 HOH A 131 383 383 HOH HOH . G 5 HOH A 132 384 384 HOH HOH . G 5 HOH A 133 385 385 HOH HOH . G 5 HOH A 134 386 386 HOH HOH . G 5 HOH A 135 387 387 HOH HOH . G 5 HOH A 136 388 388 HOH HOH . G 5 HOH A 137 389 389 HOH HOH . G 5 HOH A 138 390 390 HOH HOH . G 5 HOH A 139 391 391 HOH HOH . G 5 HOH A 140 392 392 HOH HOH . G 5 HOH A 141 393 393 HOH HOH . G 5 HOH A 142 394 394 HOH HOH . G 5 HOH A 143 395 395 HOH HOH . G 5 HOH A 144 396 396 HOH HOH . G 5 HOH A 145 397 397 HOH HOH . G 5 HOH A 146 398 398 HOH HOH . G 5 HOH A 147 399 399 HOH HOH . G 5 HOH A 148 400 400 HOH HOH . G 5 HOH A 149 401 401 HOH HOH . G 5 HOH A 150 402 402 HOH HOH . G 5 HOH A 151 403 403 HOH HOH . G 5 HOH A 152 404 404 HOH HOH . G 5 HOH A 153 405 405 HOH HOH . G 5 HOH A 154 406 406 HOH HOH . G 5 HOH A 155 407 407 HOH HOH . G 5 HOH A 156 408 408 HOH HOH . G 5 HOH A 157 409 409 HOH HOH . G 5 HOH A 158 410 410 HOH HOH . G 5 HOH A 159 411 411 HOH HOH . G 5 HOH A 160 412 412 HOH HOH . G 5 HOH A 161 413 413 HOH HOH . G 5 HOH A 162 414 414 HOH HOH . G 5 HOH A 163 415 415 HOH HOH . G 5 HOH A 164 416 416 HOH HOH . G 5 HOH A 165 417 417 HOH HOH . G 5 HOH A 166 418 418 HOH HOH . G 5 HOH A 167 419 419 HOH HOH . G 5 HOH A 168 420 420 HOH HOH . G 5 HOH A 169 421 421 HOH HOH . G 5 HOH A 170 422 422 HOH HOH . G 5 HOH A 171 423 423 HOH HOH . G 5 HOH A 172 424 424 HOH HOH . G 5 HOH A 173 425 425 HOH HOH . G 5 HOH A 174 426 426 HOH HOH . G 5 HOH A 175 427 427 HOH HOH . G 5 HOH A 176 428 428 HOH HOH . G 5 HOH A 177 429 429 HOH HOH . G 5 HOH A 178 430 430 HOH HOH . G 5 HOH A 179 431 431 HOH HOH . G 5 HOH A 180 432 432 HOH HOH . G 5 HOH A 181 433 433 HOH HOH . G 5 HOH A 182 434 434 HOH HOH . G 5 HOH A 183 435 435 HOH HOH . G 5 HOH A 184 436 436 HOH HOH . G 5 HOH A 185 437 437 HOH HOH . G 5 HOH A 186 438 438 HOH HOH . G 5 HOH A 187 439 439 HOH HOH . G 5 HOH A 188 440 440 HOH HOH . G 5 HOH A 189 441 441 HOH HOH . G 5 HOH A 190 442 442 HOH HOH . G 5 HOH A 191 443 443 HOH HOH . G 5 HOH A 192 444 444 HOH HOH . G 5 HOH A 193 445 445 HOH HOH . G 5 HOH A 194 446 446 HOH HOH . G 5 HOH A 195 447 447 HOH HOH . G 5 HOH A 196 448 448 HOH HOH . G 5 HOH A 197 449 449 HOH HOH . G 5 HOH A 198 450 450 HOH HOH . G 5 HOH A 199 451 451 HOH HOH . G 5 HOH A 200 452 452 HOH HOH . G 5 HOH A 201 453 453 HOH HOH . G 5 HOH A 202 454 454 HOH HOH . G 5 HOH A 203 455 455 HOH HOH . G 5 HOH A 204 456 456 HOH HOH . G 5 HOH A 205 457 457 HOH HOH . G 5 HOH A 206 458 458 HOH HOH . G 5 HOH A 207 459 459 HOH HOH . G 5 HOH A 208 460 460 HOH HOH . G 5 HOH A 209 461 461 HOH HOH . H 5 HOH P 1 72 72 HOH HOH . H 5 HOH P 2 97 97 HOH HOH . H 5 HOH P 3 123 123 HOH HOH . H 5 HOH P 4 158 158 HOH HOH . H 5 HOH P 5 198 198 HOH HOH . H 5 HOH P 6 201 201 HOH HOH . H 5 HOH P 7 221 221 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 32.995 _atom_site.Cartn_y -22.223 _atom_site.Cartn_z 28.24 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 250 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #