data_3P20
#
_model_server_result.job_id            '_k38xtQZg-G6w0uohD9GBQ' 
_model_server_result.datetime_utc      '2025-02-20 15:45:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":595}' 
#
_entry.id    3P20 
#
_exptl.entry_id    3P20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P20 
_cell.length_a            127.55 
_cell.length_b            127.55 
_cell.length_c            104.064 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
? 4 H N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 244 n n 
C1 H11 MPD sing 245 n n 
C1 H12 MPD sing 246 n n 
C1 H13 MPD sing 247 n n 
C2 O2 MPD sing 248 n n 
C2 CM MPD sing 249 n n 
C2 C3 MPD sing 250 n n 
O2 HO2 MPD sing 251 n n 
CM HM1 MPD sing 252 n n 
CM HM2 MPD sing 253 n n 
CM HM3 MPD sing 254 n n 
C3 C4 MPD sing 255 n n 
C3 H31 MPD sing 256 n n 
C3 H32 MPD sing 257 n n 
C4 O4 MPD sing 258 n n 
C4 C5 MPD sing 259 n n 
C4 H4 MPD sing 260 n n 
O4 HO4 MPD sing 261 n n 
C5 H51 MPD sing 262 n n 
C5 H52 MPD sing 263 n n 
C5 H53 MPD sing 264 n n 
#
_atom_sites.entry_id                     3P20 
_atom_sites.fract_transf_matrix[1][1]    0.00784 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009609 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VO4 A 1 589 1 VO4 VO4 . 
C 2 VO4 A 1 590 1 VO4 VO4 . 
D 3 ACY A 1 591 1 ACY ACY . 
E 4 MPD A 1 592 1 MPD MPD . 
F 3 ACY A 1 593 1 ACY ACY . 
G 4 MPD A 1 594 1 MPD MPD . 
H 4 MPD A 1 595 1 MPD MPD . 
I 3 ACY A 1 596 1 ACY ACY . 
J 3 ACY A 1 597 1 ACY ACY . 
K 5 TRS A 1 598 1 TRS TRS . 
L 3 ACY A 1 599 1 ACY ACY . 
M 3 ACY A 1 600 1 ACY ACY . 
N 6 HOH A 1 601 1 HOH HOH . 
N 6 HOH A 2 602 2 HOH HOH . 
N 6 HOH A 3 603 3 HOH HOH . 
N 6 HOH A 4 604 4 HOH HOH . 
N 6 HOH A 5 605 5 HOH HOH . 
N 6 HOH A 6 606 6 HOH HOH . 
N 6 HOH A 7 607 7 HOH HOH . 
N 6 HOH A 8 608 8 HOH HOH . 
N 6 HOH A 9 609 9 HOH HOH . 
N 6 HOH A 10 610 10 HOH HOH . 
N 6 HOH A 11 611 11 HOH HOH . 
N 6 HOH A 12 612 12 HOH HOH . 
N 6 HOH A 13 613 13 HOH HOH . 
N 6 HOH A 14 614 14 HOH HOH . 
N 6 HOH A 15 615 15 HOH HOH . 
N 6 HOH A 16 616 16 HOH HOH . 
N 6 HOH A 17 617 17 HOH HOH . 
N 6 HOH A 18 618 18 HOH HOH . 
N 6 HOH A 19 619 19 HOH HOH . 
N 6 HOH A 20 620 20 HOH HOH . 
N 6 HOH A 21 621 21 HOH HOH . 
N 6 HOH A 22 622 22 HOH HOH . 
N 6 HOH A 23 623 23 HOH HOH . 
N 6 HOH A 24 624 24 HOH HOH . 
N 6 HOH A 25 625 25 HOH HOH . 
N 6 HOH A 26 626 26 HOH HOH . 
N 6 HOH A 27 627 27 HOH HOH . 
N 6 HOH A 28 628 28 HOH HOH . 
N 6 HOH A 29 629 29 HOH HOH . 
N 6 HOH A 30 630 30 HOH HOH . 
N 6 HOH A 31 631 31 HOH HOH . 
N 6 HOH A 32 632 32 HOH HOH . 
N 6 HOH A 33 633 33 HOH HOH . 
N 6 HOH A 34 634 34 HOH HOH . 
N 6 HOH A 35 635 35 HOH HOH . 
N 6 HOH A 36 636 36 HOH HOH . 
N 6 HOH A 37 637 37 HOH HOH . 
N 6 HOH A 38 638 38 HOH HOH . 
N 6 HOH A 39 639 39 HOH HOH . 
N 6 HOH A 40 640 40 HOH HOH . 
N 6 HOH A 41 641 41 HOH HOH . 
N 6 HOH A 42 642 42 HOH HOH . 
N 6 HOH A 43 643 43 HOH HOH . 
N 6 HOH A 44 644 44 HOH HOH . 
N 6 HOH A 45 645 45 HOH HOH . 
N 6 HOH A 46 646 46 HOH HOH . 
N 6 HOH A 47 647 47 HOH HOH . 
N 6 HOH A 48 648 48 HOH HOH . 
N 6 HOH A 49 649 49 HOH HOH . 
N 6 HOH A 50 650 50 HOH HOH . 
N 6 HOH A 51 651 51 HOH HOH . 
N 6 HOH A 52 652 52 HOH HOH . 
N 6 HOH A 53 653 53 HOH HOH . 
N 6 HOH A 54 654 54 HOH HOH . 
N 6 HOH A 55 655 55 HOH HOH . 
N 6 HOH A 56 656 56 HOH HOH . 
N 6 HOH A 57 657 57 HOH HOH . 
N 6 HOH A 58 658 58 HOH HOH . 
N 6 HOH A 59 659 59 HOH HOH . 
N 6 HOH A 60 660 60 HOH HOH . 
N 6 HOH A 61 661 61 HOH HOH . 
N 6 HOH A 62 662 62 HOH HOH . 
N 6 HOH A 63 663 63 HOH HOH . 
N 6 HOH A 64 664 64 HOH HOH . 
N 6 HOH A 65 665 65 HOH HOH . 
N 6 HOH A 66 666 66 HOH HOH . 
N 6 HOH A 67 667 67 HOH HOH . 
N 6 HOH A 68 668 68 HOH HOH . 
N 6 HOH A 69 669 69 HOH HOH . 
N 6 HOH A 70 670 70 HOH HOH . 
N 6 HOH A 71 671 71 HOH HOH . 
N 6 HOH A 72 672 72 HOH HOH . 
N 6 HOH A 73 673 73 HOH HOH . 
N 6 HOH A 74 674 74 HOH HOH . 
N 6 HOH A 75 675 75 HOH HOH . 
N 6 HOH A 76 676 76 HOH HOH . 
N 6 HOH A 77 677 77 HOH HOH . 
N 6 HOH A 78 678 78 HOH HOH . 
N 6 HOH A 79 679 79 HOH HOH . 
N 6 HOH A 80 680 80 HOH HOH . 
N 6 HOH A 81 681 81 HOH HOH . 
N 6 HOH A 82 682 82 HOH HOH . 
N 6 HOH A 83 683 83 HOH HOH . 
N 6 HOH A 84 684 84 HOH HOH . 
N 6 HOH A 85 685 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . H 4 -19.415 8.319 -2.266 1 61.39 ? C1 MPD 595 A 1 
HETATM 2 C C2 MPD . . . H 4 -19.547 9.657 -2.939 1 61.44 ? C2 MPD 595 A 1 
HETATM 3 O O2 MPD . . . H 4 -18.52 9.707 -3.93 1 60.2 ? O2 MPD 595 A 1 
HETATM 4 C CM MPD . . . H 4 -20.892 9.784 -3.606 1 60.39 ? CM MPD 595 A 1 
HETATM 5 C C3 MPD . . . H 4 -19.283 10.838 -2.04 1 63.04 ? C3 MPD 595 A 1 
HETATM 6 C C4 MPD . . . H 4 -20.002 10.914 -0.714 1 63.58 ? C4 MPD 595 A 1 
HETATM 7 O O4 MPD . . . H 4 -19.677 9.83 0.089 1 64.85 ? O4 MPD 595 A 1 
HETATM 8 C C5 MPD . . . H 4 -19.446 12.117 0.002 1 62.89 ? C5 MPD 595 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#