data_3P2B # _model_server_result.job_id chTgaUN2B7eEkbokZoRmOg _model_server_result.datetime_utc '2024-11-17 09:38:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3P2B # _exptl.entry_id 3P2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.386 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[2-morpholin-4-yl-6-(pyridin-3-ylamino)pyrimidin-4-yl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.95 _cell.angle_gamma 90 _cell.entry_id 3P2B _cell.length_a 141.12 _cell.length_b 66.78 _cell.length_c 105.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N5 O2' _chem_comp.formula_weight 349.386 _chem_comp.id P2B _chem_comp.mon_nstd_flag . _chem_comp.name 3-[2-morpholin-4-yl-6-(pyridin-3-ylamino)pyrimidin-4-yl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 P2B sing 237 n n C11 C1 P2B doub 238 n y C1 N5 P2B sing 239 n y N2 C4 P2B sing 240 n n N2 HN2 P2B sing 241 n n C20 C4 P2B doub 242 n y C4 C13 P2B sing 243 n y N5 C6 P2B doub 244 n y N8 C6 P2B sing 245 n y C6 N7 P2B sing 246 n n C22 N7 P2B sing 247 n n N7 C32 P2B sing 248 n n C9 N8 P2B doub 249 n y C11 C9 P2B sing 250 n y C10 C9 P2B sing 251 n y C35 C10 P2B doub 252 n y C10 C44 P2B sing 253 n y C11 H11 P2B sing 254 n n C13 C15 P2B doub 255 n y C13 H13 P2B sing 256 n n C17 C15 P2B sing 257 n y C15 H15 P2B sing 258 n n N19 C17 P2B doub 259 n y C17 H17 P2B sing 260 n n C20 N19 P2B sing 261 n y C20 H20 P2B sing 262 n n C22 C25 P2B sing 263 n n C22 H22 P2B sing 264 n n C22 H22A P2B sing 265 n n C25 O28 P2B sing 266 n n C25 H25 P2B sing 267 n n C25 H25A P2B sing 268 n n O28 C29 P2B sing 269 n n C32 C29 P2B sing 270 n n C29 H29 P2B sing 271 n n C29 H29A P2B sing 272 n n C32 H32 P2B sing 273 n n C32 H32A P2B sing 274 n n C37 C35 P2B sing 275 n y C35 H35 P2B sing 276 n n C37 C39 P2B doub 277 n y C37 H37 P2B sing 278 n n C39 C41 P2B sing 279 n y C39 H39 P2B sing 280 n n C41 C44 P2B doub 281 n y C41 O42 P2B sing 282 n n O42 HO42 P2B sing 283 n n C44 H44 P2B sing 284 n n # _atom_sites.entry_id 3P2B _atom_sites.fract_transf_matrix[1][1] 0.007086 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000864 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P2B A 1 1 1 P2B P2B . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 1109 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P2B . . . B 2 20.615 14.003 20.835 1 103.15 ? C1 P2B 1 A 1 HETATM 2 N N2 P2B . . . B 2 20.174 15.274 20.465 1 96.7 ? N2 P2B 1 A 1 HETATM 3 C C4 P2B . . . B 2 18.949 15.942 20.553 1 102.11 ? C4 P2B 1 A 1 HETATM 4 N N5 P2B . . . B 2 19.676 13.235 21.41 1 102.57 ? N5 P2B 1 A 1 HETATM 5 C C6 P2B . . . B 2 19.993 11.998 21.817 1 98.14 ? C6 P2B 1 A 1 HETATM 6 N N7 P2B . . . B 2 19.018 11.233 22.404 1 87.78 ? N7 P2B 1 A 1 HETATM 7 N N8 P2B . . . B 2 21.225 11.494 21.67 1 99.43 ? N8 P2B 1 A 1 HETATM 8 C C9 P2B . . . B 2 22.173 12.261 21.093 1 101.95 ? C9 P2B 1 A 1 HETATM 9 C C10 P2B . . . B 2 23.498 11.621 20.965 1 96.64 ? C10 P2B 1 A 1 HETATM 10 C C11 P2B . . . B 2 21.901 13.543 20.657 1 107.47 ? C11 P2B 1 A 1 HETATM 11 C C13 P2B . . . B 2 17.721 15.303 20.739 1 108.87 ? C13 P2B 1 A 1 HETATM 12 C C15 P2B . . . B 2 16.54 16.04 20.821 1 108.28 ? C15 P2B 1 A 1 HETATM 13 C C17 P2B . . . B 2 16.619 17.417 20.716 1 105.7 ? C17 P2B 1 A 1 HETATM 14 N N19 P2B . . . B 2 17.776 18.088 20.538 1 108.23 ? N19 P2B 1 A 1 HETATM 15 C C20 P2B . . . B 2 18.902 17.335 20.461 1 103.8 ? C20 P2B 1 A 1 HETATM 16 C C22 P2B . . . B 2 17.603 11.557 22.245 1 83.32 ? C22 P2B 1 A 1 HETATM 17 C C25 P2B . . . B 2 16.896 11.502 23.601 1 77.55 ? C25 P2B 1 A 1 HETATM 18 O O28 P2B . . . B 2 17.155 10.258 24.262 1 73.62 ? O28 P2B 1 A 1 HETATM 19 C C29 P2B . . . B 2 18.556 10.112 24.519 1 81.19 ? C29 P2B 1 A 1 HETATM 20 C C32 P2B . . . B 2 19.353 10.066 23.213 1 80.45 ? C32 P2B 1 A 1 HETATM 21 C C35 P2B . . . B 2 24.36 11.956 19.902 1 93.41 ? C35 P2B 1 A 1 HETATM 22 C C37 P2B . . . B 2 25.613 11.351 19.761 1 92.27 ? C37 P2B 1 A 1 HETATM 23 C C39 P2B . . . B 2 26.023 10.386 20.675 1 94.14 ? C39 P2B 1 A 1 HETATM 24 C C41 P2B . . . B 2 25.181 10.033 21.723 1 88.33 ? C41 P2B 1 A 1 HETATM 25 O O42 P2B . . . B 2 25.62 9.082 22.598 1 83.5 ? O42 P2B 1 A 1 HETATM 26 C C44 P2B . . . B 2 23.931 10.633 21.872 1 91.03 ? C44 P2B 1 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #